Wall clock time and date at job start Tue Mar 31 2020 18:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35372 * 126.38363 * 2 1 4 4 C 1.41508 * 105.49988 * 180.14316 * 3 2 1 5 5 C 1.47711 * 126.51488 * 179.84246 * 4 3 2 6 6 O 1.21569 * 119.99895 * 6.57049 * 5 4 3 7 7 N 1.34774 * 119.99621 * 186.56730 * 5 4 3 8 8 C 1.47165 * 121.07907 * 176.29217 * 7 5 4 9 9 C 1.53286 * 108.57780 * 231.20211 * 8 7 5 10 10 H 1.08996 * 109.51003 * 66.93084 * 9 8 7 11 11 C 1.52995 * 109.51414 * 187.03835 * 9 8 7 12 12 O 1.43125 * 109.21857 * 307.00814 * 9 8 7 13 13 C 1.41888 * 114.37712 * 60.88579 * 12 9 8 14 14 C 1.54374 * 110.71141 * 63.28779 * 13 12 9 15 15 C 1.54455 * 102.87610 * 83.69320 * 14 13 12 16 16 N 1.47082 * 107.29426 * 21.50246 * 15 14 13 17 17 C 1.36936 * 125.63227 * 180.98515 * 16 15 14 18 18 H 1.08000 * 120.00034 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99909 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00065 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47133 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47172 * 300.00452 * 21 19 17 24 24 H 1.48501 * 109.47239 * 60.00307 * 21 19 17 25 25 C 1.47578 * 108.73743 * 1.24270 * 16 15 14 26 26 C 1.47334 * 121.08293 * 356.26691 * 7 5 4 27 27 N 1.31810 * 106.96219 * 359.58046 * 4 3 2 28 28 N 1.28462 * 110.07212 * 0.26694 * 27 4 3 29 29 H 0.97006 * 124.88290 * 179.97438 * 28 27 4 30 30 H 1.08999 * 109.47113 * 270.35151 * 1 2 3 31 31 H 1.08999 * 109.47561 * 30.34586 * 1 2 3 32 32 H 1.09003 * 109.47295 * 150.34681 * 1 2 3 33 33 H 1.08001 * 127.25229 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.62072 * 350.92391 * 8 7 5 35 35 H 1.08996 * 109.62122 * 111.29041 * 8 7 5 36 36 H 1.09006 * 109.47596 * 59.99472 * 11 9 8 37 37 H 1.08993 * 109.47395 * 179.97438 * 11 9 8 38 38 H 1.09007 * 109.46815 * 299.99936 * 11 9 8 39 39 H 1.08999 * 110.72798 * 325.34664 * 14 13 12 40 40 H 1.09002 * 110.73167 * 202.04391 * 14 13 12 41 41 H 1.08997 * 109.87889 * 262.07503 * 15 14 13 42 42 H 1.09004 * 109.87846 * 140.92395 * 15 14 13 43 43 H 0.97000 * 120.00478 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.37625 * 95.26059 * 25 16 15 45 45 H 1.09007 * 110.37340 * 217.60318 * 25 16 15 46 46 H 1.08995 * 109.67771 * 11.11835 * 26 7 5 47 47 H 1.09002 * 109.67464 * 250.57534 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 6 3.6321 0.5854 -0.0034 5 6 4.8764 1.3812 -0.0080 6 8 4.8253 2.5900 0.1113 7 7 6.0684 0.7673 -0.1444 8 6 7.3164 1.5422 -0.2333 9 6 8.0985 1.0690 -1.4637 10 1 7.5530 1.3393 -2.3679 11 6 9.4764 1.7336 -1.4801 12 8 8.2531 -0.3527 -1.4056 13 6 7.0318 -1.0750 -1.4045 14 6 6.2600 -0.8445 -2.7214 15 6 6.9035 -1.8691 -3.6815 16 7 7.5324 -2.9092 -2.8533 17 6 8.2272 -3.9915 -3.3234 18 1 8.6528 -4.7024 -2.6307 19 6 8.3847 -4.1748 -4.6903 20 7 7.8665 -3.3081 -5.5345 21 14 9.3331 -5.6507 -5.3316 22 1 9.3579 -5.6163 -6.8160 23 1 10.7239 -5.6090 -4.8127 24 1 8.6721 -6.9000 -4.8760 25 6 7.2856 -2.5972 -1.4321 26 6 6.1645 -0.7015 -0.2088 27 7 3.5419 -0.7296 0.0041 28 7 2.3080 -1.0870 0.0061 29 1 1.9965 -2.0056 0.0109 30 1 -0.3633 0.0063 1.0276 31 1 -0.3634 0.8868 -0.5192 32 1 -0.3634 -0.8931 -0.5084 33 1 2.0057 2.1261 -0.0004 34 1 7.0827 2.6021 -0.3336 35 1 7.9114 1.3821 0.6658 36 1 10.0220 1.4615 -0.5765 37 1 10.0321 1.3964 -2.3550 38 1 9.3570 2.8164 -1.5202 39 1 6.4111 0.1722 -3.0843 40 1 5.1986 -1.0540 -2.5883 41 1 7.6580 -1.3781 -4.2961 42 1 6.1373 -2.3139 -4.3165 43 1 7.9768 -3.4359 -6.4897 44 1 6.4102 -3.1373 -1.0715 45 1 8.1604 -2.8465 -0.8314 46 1 5.1694 -1.1295 -0.3293 47 1 6.6191 -1.0800 0.7068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071144205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:14 Heat of formation + Delta-G solvation = 21.706246 kcal Electronic energy + Delta-G solvation = -30539.804925 eV Core-core repulsion = 26532.011107 eV Total energy + Delta-G solvation = -4007.793819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.75680 -41.69359 -39.92937 -37.86833 -35.99373 -34.77001 -33.70044 -33.09696 -32.69385 -31.08506 -29.97523 -28.41583 -27.59360 -27.31968 -25.56634 -24.38484 -23.00690 -22.24352 -21.99429 -20.83559 -20.09155 -19.05754 -18.85021 -18.00237 -17.51816 -17.13783 -16.95543 -16.73124 -16.28211 -15.96531 -15.58274 -15.46799 -15.13352 -14.86081 -14.74827 -14.21966 -14.05923 -14.01895 -13.82442 -13.71058 -13.58508 -13.27215 -13.16665 -13.03566 -12.87192 -12.79282 -12.73100 -12.31440 -12.08644 -12.06635 -11.86292 -11.83795 -11.60468 -11.52338 -10.99004 -10.82942 -10.68938 -10.46545 -9.92807 -9.56699 -8.89984 -7.83175 -5.18928 0.42520 1.12007 1.45948 1.50284 1.56164 1.63633 2.04937 2.25445 2.50268 2.62908 3.19613 3.35466 3.48731 3.58896 3.76025 3.83671 3.87680 3.92432 3.98782 4.06914 4.23052 4.36379 4.38121 4.45873 4.55722 4.59008 4.68783 4.71565 4.78945 4.79449 4.82990 4.87236 4.93757 5.04408 5.05307 5.07391 5.13253 5.19452 5.29735 5.43792 5.48047 5.58298 5.70540 6.09339 6.17461 6.20989 6.38174 6.78531 7.02472 7.09541 7.76547 8.41978 9.27570 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.003922 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.205177 B = 7137.179641 C = 8795.456391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.039 3.961 3 C -0.202 4.202 4 C -0.032 4.032 5 C 0.602 3.398 6 O -0.566 6.566 7 N -0.599 5.599 8 C 0.088 3.912 9 C 0.067 3.933 10 H 0.047 0.953 11 C -0.134 4.134 12 O -0.372 6.372 13 C 0.105 3.895 14 C -0.146 4.146 15 C 0.201 3.799 16 N -0.620 5.620 17 C -0.240 4.240 18 H 0.086 0.914 19 C -0.067 4.067 20 N -0.954 5.954 21 Si 0.981 3.019 22 H -0.296 1.296 23 H -0.278 1.278 24 H -0.273 1.273 25 C 0.150 3.850 26 C 0.075 3.925 27 N -0.272 5.272 28 N -0.368 5.368 29 H 0.460 0.540 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.003 0.997 42 H 0.007 0.993 43 H 0.245 0.755 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.151 0.849 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.805 8.304 14.601 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.230 4.230 4 C -0.191 4.191 5 C 0.390 3.610 6 O -0.444 6.444 7 N -0.330 5.330 8 C -0.034 4.034 9 C 0.009 3.991 10 H 0.065 0.935 11 C -0.191 4.191 12 O -0.291 6.291 13 C 0.064 3.936 14 C -0.185 4.185 15 C 0.076 3.924 16 N -0.346 5.346 17 C -0.369 4.369 18 H 0.104 0.896 19 C -0.260 4.260 20 N -0.603 5.603 21 Si 0.809 3.191 22 H -0.222 1.222 23 H -0.205 1.205 24 H -0.199 1.199 25 C 0.024 3.976 26 C -0.049 4.049 27 N -0.109 5.109 28 N -0.084 5.084 29 H 0.308 0.692 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.184 0.816 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.022 0.978 42 H 0.025 0.975 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.167 0.833 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.925 7.847 14.500 20.949 hybrid contribution 0.040 -0.375 -1.032 1.099 sum -12.885 7.472 13.468 20.081 Atomic orbital electron populations 1.20557 0.83191 1.05535 1.04925 1.21989 0.97038 0.85846 1.03884 1.21701 0.89801 1.00946 1.10530 1.21776 0.95101 0.90323 1.11873 1.17264 0.82016 0.86045 0.75705 1.90728 1.86808 1.14302 1.52522 1.48060 1.06080 1.07920 1.70967 1.22432 0.84217 0.97526 0.99215 1.22644 0.98690 0.81350 0.96445 0.93473 1.21689 0.93294 1.00870 1.03279 1.87853 1.29162 1.17759 1.94322 1.22239 0.84721 0.93073 0.93562 1.23122 0.99372 0.99069 0.96897 1.20717 0.93448 0.87394 0.90871 1.44682 1.62807 1.26079 1.00995 1.19457 1.26091 1.00085 0.91253 0.89628 1.25668 1.02365 1.01806 0.96149 1.70203 1.50813 1.38117 1.01196 0.85119 0.78537 0.78990 0.76481 1.22207 1.20457 1.19871 1.21567 0.99320 0.90260 0.86447 1.23060 1.05054 0.79088 0.97662 1.73076 1.02719 1.14209 1.20856 1.43616 1.02300 1.10867 1.51595 0.69174 0.88460 0.88578 0.89032 0.81615 0.87864 0.89012 0.90719 0.92732 0.88348 0.91945 0.90906 0.97837 0.97504 0.94561 0.92567 0.93188 0.83281 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.44 71.23 0.74 0.25 16 2 C 0.04 0.60 7.23 41.40 0.30 0.90 16 3 C -0.20 -4.43 10.74 22.41 0.24 -4.19 16 4 C -0.03 -0.88 6.90 42.46 0.29 -0.59 16 5 C 0.60 19.13 7.72 86.75 0.67 19.80 16 6 O -0.57 -20.17 16.42 -3.93 -0.06 -20.24 16 7 N -0.60 -18.16 2.95 -822.22 -2.42 -20.58 16 8 C 0.09 2.44 5.89 86.35 0.51 2.95 16 9 C 0.07 2.08 3.19 30.69 0.10 2.18 16 10 H 0.05 1.62 6.22 -2.39 -0.01 1.60 16 11 C -0.13 -3.34 9.57 71.98 0.69 -2.65 16 12 O -0.37 -14.40 9.94 -148.95 -1.48 -15.88 16 13 C 0.11 3.94 0.84 -10.08 -0.01 3.94 16 14 C -0.15 -6.03 5.86 31.56 0.19 -5.84 16 15 C 0.20 10.64 5.38 86.76 0.47 11.11 16 16 N -0.62 -33.15 3.40 -692.30 -2.35 -35.50 16 17 C -0.24 -13.83 10.28 84.03 0.86 -12.96 16 18 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 19 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 20 N -0.95 -59.34 10.31 21.65 0.22 -59.12 16 21 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 C 0.15 6.32 6.43 86.63 0.56 6.88 16 26 C 0.08 2.28 5.13 86.01 0.44 2.73 16 27 N -0.27 -6.62 8.61 -48.17 -0.41 -7.04 16 28 N -0.37 -6.05 6.83 -47.93 -0.33 -6.37 16 29 H 0.46 4.22 8.96 -219.99 -1.97 2.25 16 30 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.10 2.76 7.10 -2.39 -0.02 2.74 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.06 2.54 6.07 -2.39 -0.01 2.53 16 40 H 0.07 2.82 7.83 -2.39 -0.02 2.80 16 41 H 0.00 0.20 7.38 -2.39 -0.02 0.19 16 42 H 0.01 0.40 7.50 -2.39 -0.02 0.38 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.06 2.17 8.00 -2.39 -0.02 2.15 16 45 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.15 4.42 3.71 -56.13 -0.21 4.22 16 47 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -79.22 370.67 0.53 -78.69 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -1.17 Total: 16.30 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.51 Total: 21.02 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -5.30 Total: -128.62 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.55 Total: -36.12 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -79.22 0.53 -78.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071144205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.395 kcal (2) G-P(sol) polarization free energy of solvation -79.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds