Wall clock time and date at job start Tue Mar 31 2020 18:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35369 * 126.38563 * 2 1 4 4 C 1.41498 * 105.50340 * 180.08560 * 3 2 1 5 5 C 1.47713 * 126.51954 * 179.90095 * 4 3 2 6 6 O 1.21568 * 119.99677 * 353.12307 * 5 4 3 7 7 N 1.34776 * 120.00167 * 173.12958 * 5 4 3 8 8 C 1.47157 * 121.06475 * 173.50074 * 7 5 4 9 9 C 1.53281 * 108.54946 * 128.89006 * 8 7 5 10 10 H 1.09005 * 109.51323 * 292.98418 * 9 8 7 11 11 C 1.52995 * 109.51271 * 172.82829 * 9 8 7 12 12 O 1.43104 * 109.22250 * 52.90162 * 9 8 7 13 13 C 1.42063 * 114.33199 * 298.84371 * 12 9 8 14 14 C 1.54495 * 110.37389 * 182.82315 * 13 12 9 15 15 C 1.55263 * 101.43297 * 83.75017 * 14 13 12 16 16 N 1.47480 * 104.78409 * 36.66060 * 15 14 13 17 17 C 1.36941 * 125.66139 * 155.92008 * 16 15 14 18 18 H 1.07996 * 120.00396 * 179.69803 * 17 16 15 19 19 C 1.38811 * 119.99674 * 359.69421 * 17 16 15 20 20 N 1.31614 * 120.00303 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99884 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46987 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.46673 * 299.99984 * 21 19 17 24 24 H 1.48502 * 109.47020 * 60.00118 * 21 19 17 25 25 C 1.47177 * 108.67790 * 335.66295 * 16 15 14 26 26 C 1.47311 * 121.06166 * 353.51373 * 7 5 4 27 27 N 1.31808 * 106.96408 * 359.64073 * 4 3 2 28 28 N 1.28474 * 110.07583 * 0.22576 * 27 4 3 29 29 H 0.97000 * 124.88726 * 180.02562 * 28 27 4 30 30 H 1.09007 * 109.47132 * 270.29454 * 1 2 3 31 31 H 1.09001 * 109.47162 * 30.29121 * 1 2 3 32 32 H 1.08999 * 109.46975 * 150.29737 * 1 2 3 33 33 H 1.07993 * 127.24595 * 359.97415 * 3 2 1 34 34 H 1.09003 * 109.62318 * 9.17188 * 8 7 5 35 35 H 1.08995 * 109.62235 * 248.60559 * 8 7 5 36 36 H 1.09004 * 109.47014 * 300.25304 * 11 9 8 37 37 H 1.08996 * 109.47309 * 60.25397 * 11 9 8 38 38 H 1.09007 * 109.47189 * 180.25810 * 11 9 8 39 39 H 1.09005 * 111.01479 * 201.98278 * 14 13 12 40 40 H 1.09000 * 111.01722 * 325.82037 * 14 13 12 41 41 H 1.09007 * 110.48567 * 277.80472 * 15 14 13 42 42 H 1.08999 * 110.32681 * 155.44427 * 15 14 13 43 43 H 0.97002 * 120.00571 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.91037 * 121.11406 * 25 16 15 45 45 H 1.09006 * 109.90490 * 242.19153 * 25 16 15 46 46 H 1.09002 * 109.67281 * 109.63402 * 26 7 5 47 47 H 1.09003 * 109.67907 * 349.09714 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5854 -0.0020 5 6 4.8765 1.3812 -0.0049 6 8 4.8252 2.5892 -0.1317 7 7 6.0688 0.7681 0.1330 8 6 7.3281 1.5163 -0.0077 9 6 8.2061 1.2276 1.2151 10 1 7.7429 1.6544 2.1048 11 6 9.5890 1.8491 1.0096 12 8 8.3375 -0.1881 1.3772 13 6 7.1103 -0.8682 1.6001 14 6 7.3645 -2.3743 1.8320 15 6 7.7089 -2.3989 3.3457 16 7 6.8281 -1.3811 3.9486 17 6 6.4256 -1.3478 5.2571 18 1 5.7806 -0.5539 5.6037 19 6 6.8465 -2.3345 6.1381 20 7 7.6329 -3.3018 5.7160 21 14 6.2968 -2.2894 7.9229 22 1 6.8797 -3.4457 8.6497 23 1 6.7595 -1.0260 8.5515 24 1 4.8149 -2.3602 7.9864 25 6 6.4587 -0.4038 2.9121 26 6 6.1530 -0.6724 0.4292 27 7 3.5420 -0.7296 0.0048 28 7 2.3080 -1.0871 0.0061 29 1 1.9966 -2.0057 0.0111 30 1 -0.3634 0.0053 1.0277 31 1 -0.3633 0.8874 -0.5184 32 1 -0.3633 -0.8926 -0.5092 33 1 2.0057 2.1259 -0.0004 34 1 7.1155 2.5840 -0.0619 35 1 7.8446 1.1967 -0.9128 36 1 10.0499 1.4230 0.1184 37 1 9.4881 2.9273 0.8863 38 1 10.2142 1.6395 1.8775 39 1 6.4686 -2.9588 1.6219 40 1 8.2063 -2.7252 1.2351 41 1 8.7551 -2.1363 3.5032 42 1 7.4963 -3.3817 3.7665 43 1 7.9273 -3.9911 6.3316 44 1 5.3750 -0.3751 2.7985 45 1 6.8296 0.5843 3.1846 46 1 6.5280 -1.2054 -0.4446 47 1 5.1659 -1.0509 0.6948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071144208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:28 Heat of formation + Delta-G solvation = 44.604350 kcal Electronic energy + Delta-G solvation = -30596.202377 eV Core-core repulsion = 26589.401495 eV Total energy + Delta-G solvation = -4006.800882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.83185 -40.33781 -38.52598 -36.16290 -34.69932 -33.17992 -32.83877 -31.96525 -31.24335 -29.30306 -28.15281 -27.52524 -26.63783 -25.69788 -23.82658 -23.23882 -21.57640 -21.36845 -20.25867 -19.42562 -18.71655 -17.92970 -16.99876 -16.66302 -16.41475 -16.08307 -15.71922 -15.01306 -14.77530 -14.61006 -14.03431 -13.99243 -13.78276 -13.67017 -13.33659 -13.30366 -13.22415 -12.83790 -12.55342 -12.50415 -12.20008 -12.09855 -11.84728 -11.56701 -11.46812 -11.06296 -10.86704 -10.83435 -10.71034 -10.38778 -10.29071 -10.11778 -10.02285 -9.70157 -9.53186 -9.49034 -9.45197 -9.06889 -8.61870 -8.24811 -6.79723 -5.62121 -3.03566 1.49425 1.96895 2.63502 3.02663 3.41278 3.42151 3.45513 3.46947 3.97455 4.24372 4.47160 4.50057 4.68632 4.85151 5.04623 5.16345 5.17648 5.19267 5.28972 5.37743 5.44456 5.50852 5.51926 5.58839 5.61108 5.69136 5.74407 5.76217 5.81394 5.93805 6.02998 6.14780 6.22050 6.28028 6.31113 6.49896 6.54656 6.57194 6.67021 6.74721 6.89068 7.39119 7.60025 7.65390 7.71240 7.77556 7.88293 8.20164 8.38537 9.25033 9.85186 10.51098 11.41445 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009503 B = 0.004589 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.706577 B = 6099.745668 C = 8000.681268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.015 3.985 3 C -0.178 4.178 4 C -0.005 4.005 5 C 0.606 3.394 6 O -0.539 6.539 7 N -0.599 5.599 8 C 0.085 3.915 9 C 0.069 3.931 10 H 0.068 0.932 11 C -0.139 4.139 12 O -0.355 6.355 13 C 0.094 3.906 14 C -0.129 4.129 15 C 0.157 3.843 16 N -0.600 5.600 17 C -0.221 4.221 18 H 0.074 0.926 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.123 3.877 26 C 0.079 3.921 27 N -0.251 5.251 28 N -0.381 5.381 29 H 0.445 0.555 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.162 0.838 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.017 0.983 42 H 0.107 0.893 43 H 0.252 0.748 44 H 0.024 0.976 45 H 0.024 0.976 46 H 0.071 0.929 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 4.840 -15.623 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.165 4.165 5 C 0.393 3.607 6 O -0.415 6.415 7 N -0.332 5.332 8 C -0.037 4.037 9 C 0.010 3.990 10 H 0.086 0.914 11 C -0.197 4.197 12 O -0.274 6.274 13 C 0.054 3.946 14 C -0.168 4.168 15 C 0.033 3.967 16 N -0.326 5.326 17 C -0.350 4.350 18 H 0.092 0.908 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.212 1.212 24 H -0.213 1.213 25 C -0.003 4.003 26 C -0.044 4.044 27 N -0.087 5.087 28 N -0.095 5.095 29 H 0.289 0.711 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.179 0.821 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.035 0.965 42 H 0.125 0.875 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.089 0.911 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.419 4.365 -15.498 18.169 hybrid contribution -1.045 0.360 0.994 1.486 sum -9.464 4.726 -14.504 17.952 Atomic orbital electron populations 1.20362 0.86529 1.03867 1.03568 1.21457 0.95402 0.87152 1.07091 1.21477 0.90317 0.99741 1.09099 1.21849 0.95047 0.89742 1.09882 1.16948 0.81430 0.86061 0.76260 1.90754 1.86331 1.13102 1.51288 1.48009 1.05142 1.10582 1.69426 1.22393 0.83887 0.98428 0.98993 1.22464 0.96483 0.83449 0.96589 0.91391 1.21675 0.95050 0.99802 1.03131 1.87854 1.29598 1.17815 1.92174 1.22307 0.84259 0.94934 0.93129 1.23014 1.01307 0.90775 1.01661 1.21998 0.92492 0.96729 0.85503 1.44491 1.56224 1.26242 1.05610 1.19014 1.24271 1.07949 0.83736 0.90797 1.24753 0.99872 0.97613 0.98270 1.69777 1.38642 1.15081 1.33505 0.86170 0.77972 0.77000 0.84460 1.21507 1.21238 1.21267 1.21691 0.96367 0.93666 0.88584 1.22996 1.03818 0.79581 0.98030 1.73513 1.01012 1.14846 1.19373 1.43479 1.03119 1.09667 1.53233 0.71080 0.90107 0.89535 0.91079 0.82058 0.88289 0.90706 0.91844 0.91150 0.91235 0.90674 0.91096 0.96483 0.87497 0.93701 0.95792 0.95813 0.91050 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.44 36.01 0.38 -0.09 16 2 C 0.01 0.14 7.23 -82.20 -0.59 -0.45 16 3 C -0.18 -2.25 10.74 -39.36 -0.42 -2.67 16 4 C 0.00 -0.08 6.83 -82.77 -0.56 -0.64 16 5 C 0.61 10.29 7.71 -12.39 -0.10 10.20 16 6 O -0.54 -10.07 16.41 5.31 0.09 -9.99 16 7 N -0.60 -9.71 2.94 -173.79 -0.51 -10.22 16 8 C 0.09 1.25 5.92 -3.54 -0.02 1.23 16 9 C 0.07 1.09 3.17 -26.59 -0.08 1.01 16 10 H 0.07 1.21 6.22 -51.93 -0.32 0.89 16 11 C -0.14 -1.75 9.57 37.15 0.36 -1.39 16 12 O -0.36 -6.71 9.90 -35.23 -0.35 -7.06 16 13 C 0.09 1.80 0.80 -89.74 -0.07 1.73 16 14 C -0.13 -2.53 6.22 -24.75 -0.15 -2.68 16 15 C 0.16 3.95 5.91 -2.31 -0.01 3.93 16 16 N -0.60 -15.98 3.40 -170.08 -0.58 -16.56 16 17 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 18 H 0.07 2.08 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -27.09 10.09 55.49 0.56 -26.53 16 21 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.12 2.80 6.32 -3.32 -0.02 2.78 16 26 C 0.08 1.29 4.80 -3.85 -0.02 1.27 16 27 N -0.25 -3.45 8.76 33.42 0.29 -3.16 16 28 N -0.38 -3.87 6.83 33.50 0.23 -3.64 16 29 H 0.44 2.92 8.96 -190.44 -1.71 1.21 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.10 1.41 7.06 -51.93 -0.37 1.04 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.07 1.38 8.01 -51.93 -0.42 0.96 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 42 H 0.11 2.94 5.86 -51.93 -0.30 2.64 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.02 0.56 7.61 -51.93 -0.40 0.16 16 45 H 0.02 0.57 6.02 -51.93 -0.31 0.26 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.13 2.16 4.17 -53.67 -0.22 1.94 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -35.00 370.16 -9.54 -44.54 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.25 Total: 2.32 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -1.58 Total: 7.33 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.01 Total: -60.11 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.26 Total: -17.05 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.00 -9.54 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071144208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.148 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds