Wall clock time and date at job start Tue Mar 31 2020 18:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35369 * 126.38563 * 2 1 4 4 C 1.41498 * 105.50340 * 180.08560 * 3 2 1 5 5 C 1.47713 * 126.51954 * 179.90095 * 4 3 2 6 6 O 1.21568 * 119.99677 * 353.12307 * 5 4 3 7 7 N 1.34776 * 120.00167 * 173.12958 * 5 4 3 8 8 C 1.47157 * 121.06475 * 173.50074 * 7 5 4 9 9 C 1.53281 * 108.54946 * 128.89006 * 8 7 5 10 10 H 1.09005 * 109.51323 * 292.98418 * 9 8 7 11 11 C 1.52995 * 109.51271 * 172.82829 * 9 8 7 12 12 O 1.43104 * 109.22250 * 52.90162 * 9 8 7 13 13 C 1.42063 * 114.33199 * 298.84371 * 12 9 8 14 14 C 1.54495 * 110.37389 * 182.82315 * 13 12 9 15 15 C 1.55263 * 101.43297 * 83.75017 * 14 13 12 16 16 N 1.47480 * 104.78409 * 36.66060 * 15 14 13 17 17 C 1.36941 * 125.66139 * 155.92008 * 16 15 14 18 18 H 1.07996 * 120.00396 * 179.69803 * 17 16 15 19 19 C 1.38811 * 119.99674 * 359.69421 * 17 16 15 20 20 N 1.31614 * 120.00303 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99884 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46987 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.46673 * 299.99984 * 21 19 17 24 24 H 1.48502 * 109.47020 * 60.00118 * 21 19 17 25 25 C 1.47177 * 108.67790 * 335.66295 * 16 15 14 26 26 C 1.47311 * 121.06166 * 353.51373 * 7 5 4 27 27 N 1.31808 * 106.96408 * 359.64073 * 4 3 2 28 28 N 1.28474 * 110.07583 * 0.22576 * 27 4 3 29 29 H 0.97000 * 124.88726 * 180.02562 * 28 27 4 30 30 H 1.09007 * 109.47132 * 270.29454 * 1 2 3 31 31 H 1.09001 * 109.47162 * 30.29121 * 1 2 3 32 32 H 1.08999 * 109.46975 * 150.29737 * 1 2 3 33 33 H 1.07993 * 127.24595 * 359.97415 * 3 2 1 34 34 H 1.09003 * 109.62318 * 9.17188 * 8 7 5 35 35 H 1.08995 * 109.62235 * 248.60559 * 8 7 5 36 36 H 1.09004 * 109.47014 * 300.25304 * 11 9 8 37 37 H 1.08996 * 109.47309 * 60.25397 * 11 9 8 38 38 H 1.09007 * 109.47189 * 180.25810 * 11 9 8 39 39 H 1.09005 * 111.01479 * 201.98278 * 14 13 12 40 40 H 1.09000 * 111.01722 * 325.82037 * 14 13 12 41 41 H 1.09007 * 110.48567 * 277.80472 * 15 14 13 42 42 H 1.08999 * 110.32681 * 155.44427 * 15 14 13 43 43 H 0.97002 * 120.00571 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.91037 * 121.11406 * 25 16 15 45 45 H 1.09006 * 109.90490 * 242.19153 * 25 16 15 46 46 H 1.09002 * 109.67281 * 109.63402 * 26 7 5 47 47 H 1.09003 * 109.67907 * 349.09714 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5854 -0.0020 5 6 4.8765 1.3812 -0.0049 6 8 4.8252 2.5892 -0.1317 7 7 6.0688 0.7681 0.1330 8 6 7.3281 1.5163 -0.0077 9 6 8.2061 1.2276 1.2151 10 1 7.7429 1.6544 2.1048 11 6 9.5890 1.8491 1.0096 12 8 8.3375 -0.1881 1.3772 13 6 7.1103 -0.8682 1.6001 14 6 7.3645 -2.3743 1.8320 15 6 7.7089 -2.3989 3.3457 16 7 6.8281 -1.3811 3.9486 17 6 6.4256 -1.3478 5.2571 18 1 5.7806 -0.5539 5.6037 19 6 6.8465 -2.3345 6.1381 20 7 7.6329 -3.3018 5.7160 21 14 6.2968 -2.2894 7.9229 22 1 6.8797 -3.4457 8.6497 23 1 6.7595 -1.0260 8.5515 24 1 4.8149 -2.3602 7.9864 25 6 6.4587 -0.4038 2.9121 26 6 6.1530 -0.6724 0.4292 27 7 3.5420 -0.7296 0.0048 28 7 2.3080 -1.0871 0.0061 29 1 1.9966 -2.0057 0.0111 30 1 -0.3634 0.0053 1.0277 31 1 -0.3633 0.8874 -0.5184 32 1 -0.3633 -0.8926 -0.5092 33 1 2.0057 2.1259 -0.0004 34 1 7.1155 2.5840 -0.0619 35 1 7.8446 1.1967 -0.9128 36 1 10.0499 1.4230 0.1184 37 1 9.4881 2.9273 0.8863 38 1 10.2142 1.6395 1.8775 39 1 6.4686 -2.9588 1.6219 40 1 8.2063 -2.7252 1.2351 41 1 8.7551 -2.1363 3.5032 42 1 7.4963 -3.3817 3.7665 43 1 7.9273 -3.9911 6.3316 44 1 5.3750 -0.3751 2.7985 45 1 6.8296 0.5843 3.1846 46 1 6.5280 -1.2054 -0.4446 47 1 5.1659 -1.0509 0.6948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071144208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:27 Heat of formation + Delta-G solvation = 20.233413 kcal Electronic energy + Delta-G solvation = -30597.259180 eV Core-core repulsion = 26589.401495 eV Total energy + Delta-G solvation = -4007.857685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.75651 -41.72688 -39.94184 -37.87460 -36.01362 -34.87384 -33.70745 -33.12274 -32.73305 -31.06747 -29.78598 -28.40392 -27.63745 -27.50538 -25.55179 -24.40359 -23.04355 -22.25993 -22.06292 -20.83008 -20.00372 -19.00476 -18.92108 -18.03688 -17.61004 -17.20097 -16.97786 -16.81735 -16.34543 -15.93880 -15.65361 -15.26025 -15.13674 -14.91453 -14.84398 -14.22874 -14.14320 -14.04543 -13.82650 -13.71351 -13.47310 -13.22371 -13.17678 -13.07360 -12.85734 -12.79843 -12.71660 -12.33758 -12.16178 -12.05566 -11.97612 -11.81562 -11.60602 -11.55661 -11.05895 -10.90843 -10.77480 -10.47544 -9.92478 -9.58500 -8.94551 -7.80442 -5.26227 0.41165 1.09861 1.43034 1.46636 1.53425 1.63324 2.04428 2.23786 2.45709 2.60018 3.18350 3.27640 3.47784 3.60802 3.75119 3.77511 3.85914 3.91211 4.01790 4.04644 4.20227 4.35511 4.38932 4.51071 4.54834 4.57507 4.64879 4.65691 4.73511 4.79021 4.80822 4.93518 4.96954 5.01313 5.02888 5.06038 5.11842 5.19456 5.28753 5.39258 5.43660 5.59837 5.76484 6.07007 6.18780 6.25847 6.29736 6.75628 6.99780 7.06743 7.71618 8.36948 9.20789 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009503 B = 0.004589 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.706577 B = 6099.745668 C = 8000.681268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.038 3.962 3 C -0.205 4.205 4 C -0.037 4.037 5 C 0.601 3.399 6 O -0.566 6.566 7 N -0.603 5.603 8 C 0.089 3.911 9 C 0.065 3.935 10 H 0.039 0.961 11 C -0.132 4.132 12 O -0.370 6.370 13 C 0.104 3.896 14 C -0.114 4.114 15 C 0.162 3.838 16 N -0.619 5.619 17 C -0.248 4.248 18 H 0.071 0.929 19 C -0.058 4.058 20 N -0.943 5.943 21 Si 0.981 3.019 22 H -0.287 1.287 23 H -0.282 1.282 24 H -0.275 1.275 25 C 0.127 3.873 26 C 0.090 3.910 27 N -0.268 5.268 28 N -0.367 5.367 29 H 0.461 0.539 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.165 0.835 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.094 0.906 41 H -0.017 1.017 42 H 0.081 0.919 43 H 0.250 0.750 44 H 0.018 0.982 45 H 0.007 0.993 46 H 0.094 0.906 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 4.491 -16.972 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.233 4.233 4 C -0.195 4.195 5 C 0.389 3.611 6 O -0.444 6.444 7 N -0.334 5.334 8 C -0.033 4.033 9 C 0.007 3.993 10 H 0.057 0.943 11 C -0.189 4.189 12 O -0.289 6.289 13 C 0.063 3.937 14 C -0.152 4.152 15 C 0.037 3.963 16 N -0.345 5.345 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.251 4.251 20 N -0.592 5.592 21 Si 0.808 3.192 22 H -0.212 1.212 23 H -0.209 1.209 24 H -0.201 1.201 25 C 0.001 3.999 26 C -0.033 4.033 27 N -0.105 5.105 28 N -0.084 5.084 29 H 0.309 0.691 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.183 0.817 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.001 0.999 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.025 0.975 46 H 0.112 0.888 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.991 4.009 -16.867 20.010 hybrid contribution -0.600 0.488 1.447 1.640 sum -10.591 4.497 -15.421 19.240 Atomic orbital electron populations 1.20557 0.83119 1.05790 1.04682 1.21996 0.97092 0.85852 1.03971 1.21712 0.89947 1.00965 1.10628 1.21781 0.95137 0.90479 1.12136 1.17284 0.82162 0.86009 0.75669 1.90719 1.86812 1.14183 1.52690 1.48096 1.05582 1.10602 1.69161 1.22458 0.83219 0.98610 0.99056 1.22651 0.98654 0.81883 0.96155 0.94314 1.21684 0.92722 1.01235 1.03288 1.87834 1.29531 1.19445 1.92121 1.22155 0.84866 0.94288 0.92359 1.22883 1.02958 0.91732 0.97649 1.21761 0.90452 0.94894 0.89164 1.44773 1.56306 1.27549 1.05867 1.19325 1.24816 1.08260 0.85268 0.91140 1.25596 0.99954 0.97189 1.02372 1.70016 1.39240 1.15380 1.34598 0.85136 0.77960 0.76895 0.79206 1.21237 1.20869 1.20086 1.21751 0.96139 0.92226 0.89804 1.22870 1.03019 0.80026 0.97386 1.73352 1.02792 1.14218 1.20165 1.43584 1.02320 1.10830 1.51665 0.69119 0.89191 0.88278 0.88551 0.81741 0.88031 0.88272 0.90116 0.88614 0.92527 0.88893 0.88784 0.99878 0.90111 0.94027 0.96384 0.97529 0.88761 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.44 71.24 0.74 0.11 16 2 C 0.04 0.65 7.23 41.40 0.30 0.95 16 3 C -0.20 -5.00 10.74 22.41 0.24 -4.76 16 4 C -0.04 -1.10 6.83 42.46 0.29 -0.81 16 5 C 0.60 20.46 7.71 86.75 0.67 21.12 16 6 O -0.57 -21.47 16.41 -3.93 -0.06 -21.53 16 7 N -0.60 -19.18 2.94 -822.01 -2.42 -21.60 16 8 C 0.09 2.49 5.92 86.35 0.51 3.00 16 9 C 0.06 2.05 3.17 30.69 0.10 2.15 16 10 H 0.04 1.45 6.22 -2.38 -0.01 1.43 16 11 C -0.13 -3.17 9.57 71.98 0.69 -2.48 16 12 O -0.37 -13.87 9.90 -148.97 -1.48 -15.35 16 13 C 0.10 3.96 0.80 -10.22 -0.01 3.95 16 14 C -0.11 -4.40 6.22 31.88 0.20 -4.20 16 15 C 0.16 8.38 5.91 86.97 0.51 8.89 16 16 N -0.62 -34.07 3.40 -692.01 -2.35 -36.43 16 17 C -0.25 -14.65 10.28 84.03 0.86 -13.79 16 18 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 20 N -0.94 -56.82 10.09 21.65 0.22 -56.60 16 21 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 25 C 0.13 5.92 6.32 86.48 0.55 6.47 16 26 C 0.09 2.84 4.80 86.06 0.41 3.25 16 27 N -0.27 -7.04 8.76 -48.18 -0.42 -7.47 16 28 N -0.37 -6.70 6.83 -47.92 -0.33 -7.03 16 29 H 0.46 4.83 8.96 -219.99 -1.97 2.86 16 30 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.10 2.82 7.06 -2.39 -0.02 2.81 16 35 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.09 3.27 8.01 -2.38 -0.02 3.25 16 40 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 41 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 42 H 0.08 4.61 5.86 -2.39 -0.01 4.59 16 43 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.02 0.87 7.61 -2.39 -0.02 0.85 16 45 H 0.01 0.35 6.02 -2.38 -0.01 0.33 16 46 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.13 4.20 4.17 -4.63 -0.02 4.18 16 Total: -1.00 -78.94 370.16 0.74 -78.20 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -0.98 Total: 18.30 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 6.53 Total: 20.96 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -5.30 Total: -129.13 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.54 Total: -36.88 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -78.94 0.74 -78.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071144208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.436 kcal (2) G-P(sol) polarization free energy of solvation -78.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds