Wall clock time and date at job start Tue Mar 31 2020 18:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35308 * 126.13111 * 2 1 4 4 C 1.39870 * 107.92364 * 179.76173 * 3 2 1 5 5 C 1.50704 * 125.89871 * 180.22616 * 4 3 2 6 6 C 1.50692 * 109.47091 * 124.99990 * 5 4 3 7 7 O 1.21283 * 120.00423 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00013 * 179.97438 * 6 5 4 9 9 C 1.46846 * 120.41021 * 359.97438 * 8 6 5 10 10 C 1.53361 * 109.24429 * 232.25991 * 9 8 6 11 11 C 1.52785 * 108.81587 * 306.15890 * 10 9 8 12 12 H 1.09001 * 109.34372 * 303.33364 * 11 10 9 13 13 O 1.42606 * 111.11981 * 182.54795 * 11 10 9 14 14 C 1.43143 * 113.62826 * 176.35849 * 13 11 10 15 15 C 1.53191 * 109.73905 * 61.68704 * 14 13 11 16 16 N 1.47346 * 108.80698 * 308.79274 * 15 14 13 17 17 C 1.36933 * 121.30888 * 230.23428 * 16 15 14 18 18 H 1.07998 * 120.00331 * 152.51089 * 17 16 15 19 19 C 1.38821 * 119.99832 * 332.51351 * 17 16 15 20 20 N 1.31614 * 119.99805 * 344.74198 * 19 17 16 21 21 Si 1.86792 * 119.99867 * 164.74686 * 19 17 16 22 22 H 1.48498 * 109.47564 * 59.99819 * 21 19 17 23 23 H 1.48502 * 109.47035 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47340 * 299.99668 * 21 19 17 25 25 C 1.46880 * 117.39016 * 50.23950 * 16 15 14 26 26 H 1.08997 * 109.66226 * 67.64908 * 25 16 15 27 27 C 1.47130 * 120.41342 * 179.72219 * 8 6 5 28 28 N 1.30833 * 108.20162 * 0.24246 * 4 3 2 29 29 N 1.34953 * 126.12437 * 180.18283 * 2 1 3 30 30 H 0.97004 * 126.03968 * 359.97438 * 29 2 1 31 31 H 1.08999 * 109.46942 * 89.99794 * 1 2 3 32 32 H 1.08995 * 109.47222 * 209.99554 * 1 2 3 33 33 H 1.08999 * 109.47109 * 329.99551 * 1 2 3 34 34 H 1.08006 * 126.03626 * 0.02932 * 3 2 1 35 35 H 1.09005 * 109.46533 * 244.99538 * 5 4 3 36 36 H 1.08994 * 109.47087 * 4.99540 * 5 4 3 37 37 H 1.09000 * 109.50362 * 352.19026 * 9 8 6 38 38 H 1.09002 * 109.50599 * 112.32592 * 9 8 6 39 39 H 1.08996 * 109.58024 * 65.95698 * 10 9 8 40 40 H 1.08997 * 109.58123 * 186.36157 * 10 9 8 41 41 H 1.09003 * 109.42952 * 181.77241 * 14 13 11 42 42 H 1.09003 * 109.42635 * 301.60122 * 14 13 11 43 43 H 1.08996 * 109.58290 * 68.59497 * 15 14 13 44 44 H 1.09007 * 109.57637 * 188.99936 * 15 14 13 45 45 H 0.96996 * 120.00152 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.72991 * 246.43710 * 27 8 6 47 47 H 1.09009 * 109.72220 * 7.10379 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 3.6335 0.6558 0.0055 5 6 4.8543 1.5394 0.0123 6 6 5.7337 1.1722 1.1797 7 8 5.4016 0.2811 1.9324 8 7 6.8892 1.8340 1.3873 9 6 7.3004 2.9140 0.4812 10 6 8.7300 2.6482 -0.0061 11 6 9.6353 2.4478 1.2083 12 1 9.5696 3.3221 1.8558 13 8 10.9914 2.2545 0.8119 14 6 11.9004 2.1433 1.9121 15 6 11.5349 0.9239 2.7641 16 7 10.1004 0.9880 3.0945 17 6 9.6596 0.8421 4.3827 18 1 8.7355 1.3069 4.6932 19 6 10.4006 0.0968 5.2896 20 7 11.3486 -0.7088 4.8602 21 14 10.0521 0.2373 7.1194 22 1 8.6478 -0.1637 7.3881 23 1 10.9732 -0.6546 7.8686 24 1 10.2581 1.6416 7.5561 25 6 9.1616 1.2143 1.9878 26 1 9.1539 0.3454 1.3298 27 6 7.7517 1.4871 2.5277 28 7 3.6334 -0.6525 0.0035 29 7 2.3026 -1.0901 -0.0035 30 1 2.0055 -2.0135 -0.0061 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 1.9741 2.1210 0.0004 35 1 5.4076 1.4016 -0.9168 36 1 4.5481 2.5816 0.1017 37 1 6.6250 2.9488 -0.3736 38 1 7.2674 3.8660 1.0111 39 1 8.7443 1.7507 -0.6243 40 1 9.0822 3.5003 -0.5874 41 1 12.9161 2.0296 1.5332 42 1 11.8414 3.0438 2.5236 43 1 11.7404 0.0118 2.2038 44 1 12.1219 0.9308 3.6826 45 1 11.8662 -1.2299 5.4938 46 1 7.7794 2.3169 3.2339 47 1 7.3667 0.5952 3.0221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074212787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:35 Heat of formation + Delta-G solvation = 26.754084 kcal Electronic energy + Delta-G solvation = -29668.592680 eV Core-core repulsion = 25661.017752 eV Total energy + Delta-G solvation = -4007.574928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34424 -39.96855 -38.45526 -35.97822 -34.67430 -33.46287 -31.98979 -31.49848 -31.33039 -29.94542 -28.70845 -27.13634 -26.86952 -24.96608 -23.88061 -22.15521 -21.55424 -20.73333 -20.23291 -19.59923 -18.47814 -17.52811 -16.95444 -16.76295 -15.70740 -15.38677 -15.27567 -15.04692 -14.91791 -14.53085 -14.03190 -13.95400 -13.82945 -13.73579 -13.28988 -13.09436 -13.06721 -12.97023 -12.81285 -12.63598 -12.44504 -12.32492 -11.93481 -11.78216 -11.30105 -10.97479 -10.90199 -10.80227 -10.57619 -10.54544 -10.22211 -10.21011 -9.94613 -9.60703 -9.56314 -9.24584 -8.94791 -8.66240 -8.50312 -8.27038 -6.69505 -5.80651 -3.25822 1.82171 2.62540 2.79236 2.92412 3.31113 3.39334 3.44269 3.45592 4.27910 4.40413 4.46676 4.51352 4.76683 4.82622 4.94331 5.07726 5.14107 5.23383 5.30862 5.33157 5.40507 5.45089 5.48882 5.54654 5.61125 5.64679 5.74288 5.78832 5.92626 5.99117 6.01967 6.13325 6.19066 6.29294 6.36627 6.50498 6.53424 6.71216 6.78181 6.92914 7.16642 7.22453 7.53245 7.67366 7.70155 7.75064 7.92226 8.35940 8.49876 9.13446 9.76799 10.34754 11.27613 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.003234 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.925867 B = 8655.556421 C =10171.402902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.079 3.921 3 C -0.266 4.266 4 C 0.089 3.911 5 C -0.060 4.060 6 C 0.514 3.486 7 O -0.521 6.521 8 N -0.614 5.614 9 C 0.111 3.889 10 C -0.125 4.125 11 C 0.076 3.924 12 H 0.052 0.948 13 O -0.389 6.389 14 C 0.039 3.961 15 C 0.143 3.857 16 N -0.588 5.588 17 C -0.258 4.258 18 H 0.071 0.929 19 C 0.006 3.994 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.137 3.863 26 H 0.037 0.963 27 C 0.126 3.874 28 N -0.257 5.257 29 N -0.476 5.476 30 H 0.436 0.564 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.027 0.973 44 H 0.095 0.905 45 H 0.255 0.745 46 H 0.071 0.929 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.132 8.211 -13.251 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C -0.295 4.295 4 C -0.079 4.079 5 C -0.102 4.102 6 C 0.301 3.699 7 O -0.395 6.395 8 N -0.349 5.349 9 C -0.012 4.012 10 C -0.164 4.164 11 C 0.017 3.983 12 H 0.070 0.930 13 O -0.309 6.309 14 C -0.038 4.038 15 C 0.017 3.983 16 N -0.313 5.313 17 C -0.387 4.387 18 H 0.089 0.911 19 C -0.193 4.193 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.207 1.207 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.029 3.971 26 H 0.055 0.945 27 C 0.004 3.996 28 N -0.079 5.079 29 N -0.185 5.185 30 H 0.279 0.721 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.164 0.836 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.113 0.887 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.432 6.548 -12.893 21.148 hybrid contribution -0.630 0.217 1.258 1.424 sum -16.062 6.765 -11.636 20.956 Atomic orbital electron populations 1.20432 0.87414 1.03915 1.03195 1.21068 0.94496 0.87869 1.01556 1.21060 0.91370 0.99095 1.18005 1.21540 0.94462 0.91622 1.00234 1.20096 0.91973 0.99019 0.99069 1.20276 0.81386 0.81988 0.86288 1.90759 1.71961 1.29727 1.47083 1.48261 1.21383 1.35914 1.29351 1.21706 0.95616 0.90378 0.93495 1.21849 0.93525 1.03045 0.97932 1.22426 0.82793 0.98286 0.94830 0.93008 1.87736 1.16563 1.93917 1.32646 1.23327 0.91901 0.99872 0.88735 1.21430 0.85629 0.92812 0.98425 1.44028 1.00187 1.84703 1.02346 1.19095 1.08282 1.26088 0.85199 0.91089 1.25075 0.99472 0.95980 0.98761 1.70005 1.24676 1.26620 1.33287 0.86346 0.77810 0.77459 0.85070 1.20688 1.21567 1.20936 1.21400 0.89660 0.95011 0.91021 0.94538 1.21808 0.88863 1.02512 0.86375 1.77483 0.95399 1.12483 1.22541 1.46362 1.04238 1.08170 1.59707 0.72064 0.90282 0.91175 0.89631 0.83609 0.87287 0.87085 0.89526 0.91132 0.90800 0.90261 0.90117 0.94142 0.95440 0.88734 0.93465 0.91078 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 10.43 36.01 0.38 -0.13 16 2 C 0.08 0.79 7.21 -82.26 -0.59 0.20 16 3 C -0.27 -2.98 10.64 -40.02 -0.43 -3.41 16 4 C 0.09 1.24 6.01 -82.40 -0.50 0.74 16 5 C -0.06 -0.70 4.62 -29.04 -0.13 -0.84 16 6 C 0.51 8.55 7.68 -10.99 -0.08 8.46 16 7 O -0.52 -11.26 14.96 5.55 0.08 -11.18 16 8 N -0.61 -9.75 2.97 -172.43 -0.51 -10.26 16 9 C 0.11 1.27 6.31 -3.67 -0.02 1.25 16 10 C -0.12 -1.68 5.82 -26.65 -0.16 -1.84 16 11 C 0.08 1.39 2.47 -26.63 -0.07 1.32 16 12 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 13 O -0.39 -7.72 10.49 -35.23 -0.37 -8.09 16 14 C 0.04 0.78 6.95 37.26 0.26 1.04 16 15 C 0.14 3.46 5.42 -3.48 -0.02 3.44 16 16 N -0.59 -14.88 3.04 -164.10 -0.50 -15.38 16 17 C -0.26 -7.02 8.88 -15.06 -0.13 -7.15 16 18 H 0.07 1.88 6.27 -52.49 -0.33 1.56 16 19 C 0.01 0.17 4.99 -17.43 -0.09 0.09 16 20 N -0.90 -26.33 11.16 55.49 0.62 -25.71 16 21 Si 0.90 21.94 29.58 -169.99 -5.03 16.91 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.14 2.97 3.04 -67.30 -0.20 2.77 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 C 0.13 2.53 4.50 -3.48 -0.02 2.51 16 28 N -0.26 -4.07 12.05 33.67 0.41 -3.66 16 29 N -0.48 -5.61 7.36 33.48 0.25 -5.37 16 30 H 0.44 3.78 8.96 -182.60 -1.64 2.14 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.11 1.06 7.66 -51.93 -0.40 0.66 16 36 H 0.11 0.90 7.93 -51.93 -0.41 0.49 16 37 H 0.09 0.68 5.90 -51.93 -0.31 0.38 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.48 6.23 -51.92 -0.32 2.16 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.07 1.41 7.39 -51.93 -0.38 1.03 16 47 H 0.10 2.39 6.80 -51.92 -0.35 2.04 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -36.56 370.98 -9.62 -46.17 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.35 Total: 2.52 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -1.80 Total: 8.45 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.26 Total: -60.38 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.29 Total: -19.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.56 -9.62 -46.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074212787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.928 kcal (2) G-P(sol) polarization free energy of solvation -36.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds