Wall clock time and date at job start Tue Mar 31 2020 18:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35308 * 126.13111 * 2 1 4 4 C 1.39870 * 107.92364 * 179.76173 * 3 2 1 5 5 C 1.50704 * 125.89871 * 180.22616 * 4 3 2 6 6 C 1.50692 * 109.47091 * 124.99990 * 5 4 3 7 7 O 1.21283 * 120.00423 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00013 * 179.97438 * 6 5 4 9 9 C 1.46846 * 120.41021 * 359.97438 * 8 6 5 10 10 C 1.53361 * 109.24429 * 232.25991 * 9 8 6 11 11 C 1.52785 * 108.81587 * 306.15890 * 10 9 8 12 12 H 1.09001 * 109.34372 * 303.33364 * 11 10 9 13 13 O 1.42606 * 111.11981 * 182.54795 * 11 10 9 14 14 C 1.43143 * 113.62826 * 176.35849 * 13 11 10 15 15 C 1.53191 * 109.73905 * 61.68704 * 14 13 11 16 16 N 1.47346 * 108.80698 * 308.79274 * 15 14 13 17 17 C 1.36933 * 121.30888 * 230.23428 * 16 15 14 18 18 H 1.07998 * 120.00331 * 152.51089 * 17 16 15 19 19 C 1.38821 * 119.99832 * 332.51351 * 17 16 15 20 20 N 1.31614 * 119.99805 * 344.74198 * 19 17 16 21 21 Si 1.86792 * 119.99867 * 164.74686 * 19 17 16 22 22 H 1.48498 * 109.47564 * 59.99819 * 21 19 17 23 23 H 1.48502 * 109.47035 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47340 * 299.99668 * 21 19 17 25 25 C 1.46880 * 117.39016 * 50.23950 * 16 15 14 26 26 H 1.08997 * 109.66226 * 67.64908 * 25 16 15 27 27 C 1.47130 * 120.41342 * 179.72219 * 8 6 5 28 28 N 1.30833 * 108.20162 * 0.24246 * 4 3 2 29 29 N 1.34953 * 126.12437 * 180.18283 * 2 1 3 30 30 H 0.97004 * 126.03968 * 359.97438 * 29 2 1 31 31 H 1.08999 * 109.46942 * 89.99794 * 1 2 3 32 32 H 1.08995 * 109.47222 * 209.99554 * 1 2 3 33 33 H 1.08999 * 109.47109 * 329.99551 * 1 2 3 34 34 H 1.08006 * 126.03626 * 0.02932 * 3 2 1 35 35 H 1.09005 * 109.46533 * 244.99538 * 5 4 3 36 36 H 1.08994 * 109.47087 * 4.99540 * 5 4 3 37 37 H 1.09000 * 109.50362 * 352.19026 * 9 8 6 38 38 H 1.09002 * 109.50599 * 112.32592 * 9 8 6 39 39 H 1.08996 * 109.58024 * 65.95698 * 10 9 8 40 40 H 1.08997 * 109.58123 * 186.36157 * 10 9 8 41 41 H 1.09003 * 109.42952 * 181.77241 * 14 13 11 42 42 H 1.09003 * 109.42635 * 301.60122 * 14 13 11 43 43 H 1.08996 * 109.58290 * 68.59497 * 15 14 13 44 44 H 1.09007 * 109.57637 * 188.99936 * 15 14 13 45 45 H 0.96996 * 120.00152 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.72991 * 246.43710 * 27 8 6 47 47 H 1.09009 * 109.72220 * 7.10379 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 3.6335 0.6558 0.0055 5 6 4.8543 1.5394 0.0123 6 6 5.7337 1.1722 1.1797 7 8 5.4016 0.2811 1.9324 8 7 6.8892 1.8340 1.3873 9 6 7.3004 2.9140 0.4812 10 6 8.7300 2.6482 -0.0061 11 6 9.6353 2.4478 1.2083 12 1 9.5696 3.3221 1.8558 13 8 10.9914 2.2545 0.8119 14 6 11.9004 2.1433 1.9121 15 6 11.5349 0.9239 2.7641 16 7 10.1004 0.9880 3.0945 17 6 9.6596 0.8421 4.3827 18 1 8.7355 1.3069 4.6932 19 6 10.4006 0.0968 5.2896 20 7 11.3486 -0.7088 4.8602 21 14 10.0521 0.2373 7.1194 22 1 8.6478 -0.1637 7.3881 23 1 10.9732 -0.6546 7.8686 24 1 10.2581 1.6416 7.5561 25 6 9.1616 1.2143 1.9878 26 1 9.1539 0.3454 1.3298 27 6 7.7517 1.4871 2.5277 28 7 3.6334 -0.6525 0.0035 29 7 2.3026 -1.0901 -0.0035 30 1 2.0055 -2.0135 -0.0061 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 1.9741 2.1210 0.0004 35 1 5.4076 1.4016 -0.9168 36 1 4.5481 2.5816 0.1017 37 1 6.6250 2.9488 -0.3736 38 1 7.2674 3.8660 1.0111 39 1 8.7443 1.7507 -0.6243 40 1 9.0822 3.5003 -0.5874 41 1 12.9161 2.0296 1.5332 42 1 11.8414 3.0438 2.5236 43 1 11.7404 0.0118 2.2038 44 1 12.1219 0.9308 3.6826 45 1 11.8662 -1.2299 5.4938 46 1 7.7794 2.3169 3.2339 47 1 7.3667 0.5952 3.0221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074212787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:34 Heat of formation + Delta-G solvation = -0.942524 kcal Electronic energy + Delta-G solvation = -29669.793695 eV Core-core repulsion = 25661.017752 eV Total energy + Delta-G solvation = -4008.775943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.22392 -41.34343 -39.96951 -37.38204 -36.54098 -34.40831 -33.47694 -32.98373 -32.41746 -31.44938 -29.87365 -28.66203 -27.79414 -26.54560 -25.43712 -23.77824 -22.94454 -21.76836 -21.41174 -21.11689 -19.63345 -18.68654 -18.48860 -18.08592 -17.18453 -17.03750 -16.64790 -16.52498 -16.23196 -15.83730 -15.57019 -15.43586 -15.05268 -14.70536 -14.63114 -14.53154 -14.38543 -14.06743 -13.83686 -13.73740 -13.46141 -13.29898 -13.10678 -12.96920 -12.82369 -12.74784 -12.67826 -12.39614 -12.29822 -12.08630 -11.90954 -11.71811 -11.44630 -11.24268 -10.84913 -10.75577 -10.52630 -10.23173 -9.64261 -9.47782 -8.75797 -7.93710 -5.42432 0.99117 1.42071 1.44278 1.50770 1.66392 1.69779 2.01407 2.14906 2.45347 2.85026 3.21199 3.44815 3.55152 3.66924 3.85133 3.95106 4.04290 4.11699 4.20616 4.21633 4.28713 4.41988 4.46159 4.47876 4.51704 4.57936 4.62771 4.70984 4.78112 4.80503 4.86218 4.87772 4.91221 5.02527 5.11759 5.13569 5.14194 5.30543 5.34262 5.46889 5.52878 5.60399 5.73662 6.24608 6.34143 6.47265 6.50030 6.81234 7.02584 7.24305 7.70486 8.25856 9.12485 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.003234 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.925867 B = 8655.556421 C =10171.402902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.084 3.916 3 C -0.281 4.281 4 C 0.072 3.928 5 C -0.050 4.050 6 C 0.507 3.493 7 O -0.584 6.584 8 N -0.612 5.612 9 C 0.107 3.893 10 C -0.118 4.118 11 C 0.080 3.920 12 H 0.059 0.941 13 O -0.392 6.392 14 C 0.053 3.947 15 C 0.146 3.854 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.074 0.926 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.134 3.866 26 H -0.001 1.001 27 C 0.142 3.858 28 N -0.324 5.324 29 N -0.480 5.480 30 H 0.443 0.557 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.175 0.825 35 H 0.135 0.865 36 H 0.159 0.841 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.051 0.949 43 H -0.007 1.007 44 H 0.070 0.930 45 H 0.251 0.749 46 H 0.073 0.927 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.311 11.832 -15.116 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C -0.310 4.310 4 C -0.095 4.095 5 C -0.090 4.090 6 C 0.296 3.704 7 O -0.463 6.463 8 N -0.346 5.346 9 C -0.013 4.013 10 C -0.156 4.156 11 C 0.021 3.979 12 H 0.077 0.923 13 O -0.311 6.311 14 C -0.025 4.025 15 C 0.021 3.979 16 N -0.331 5.331 17 C -0.391 4.391 18 H 0.091 0.909 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.209 1.209 23 H -0.218 1.218 24 H -0.194 1.194 25 C 0.026 3.974 26 H 0.016 0.984 27 C 0.018 3.982 28 N -0.147 5.147 29 N -0.190 5.190 30 H 0.288 0.712 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.193 0.807 35 H 0.152 0.848 36 H 0.176 0.824 37 H 0.154 0.846 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.011 0.989 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.091 0.909 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.618 10.222 -14.812 25.185 hybrid contribution -0.030 -0.991 1.795 2.050 sum -17.649 9.231 -13.017 23.794 Atomic orbital electron populations 1.20590 0.84091 1.05117 1.04778 1.21840 0.96436 0.87008 0.99191 1.21480 0.90355 1.00820 1.18339 1.22029 0.96247 0.91404 0.99846 1.20260 0.90559 1.01045 0.97169 1.21278 0.81521 0.80746 0.86838 1.90734 1.73440 1.32489 1.49604 1.48345 1.20611 1.36908 1.28690 1.22167 0.95169 0.89480 0.94522 1.21917 0.93590 1.04268 0.95839 1.22551 0.82665 0.95835 0.96880 0.92304 1.87747 1.17280 1.93674 1.32413 1.23157 0.93302 0.97607 0.88404 1.21305 0.85178 0.93784 0.97683 1.44345 1.01298 1.84678 1.02822 1.19417 1.08052 1.25324 0.86347 0.90881 1.25868 0.99765 0.96042 1.02862 1.70171 1.25942 1.27853 1.34283 0.85336 0.77133 0.77889 0.80092 1.20882 1.21795 1.19394 1.21558 0.90318 0.95633 0.89862 0.98376 1.21273 0.88468 1.00405 0.88051 1.77384 0.97859 1.14222 1.25251 1.46423 1.03585 1.09259 1.59752 0.71182 0.88341 0.90200 0.88181 0.80720 0.84772 0.82356 0.84568 0.88476 0.91765 0.86429 0.87339 0.93021 0.98898 0.91183 0.93975 0.90876 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.43 71.24 0.74 0.03 16 2 C 0.08 1.54 7.21 41.40 0.30 1.84 16 3 C -0.28 -5.63 10.64 21.99 0.23 -5.39 16 4 C 0.07 1.89 6.01 43.10 0.26 2.15 16 5 C -0.05 -1.01 4.62 29.10 0.13 -0.88 16 6 C 0.51 16.59 7.68 87.66 0.67 17.26 16 7 O -0.58 -26.48 14.96 -3.04 -0.05 -26.53 16 8 N -0.61 -18.71 2.97 -817.83 -2.43 -21.14 16 9 C 0.11 1.97 6.31 86.43 0.55 2.52 16 10 C -0.12 -2.74 5.82 30.64 0.18 -2.56 16 11 C 0.08 2.78 2.47 30.66 0.08 2.85 16 12 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 13 O -0.39 -14.94 10.49 -148.98 -1.56 -16.50 16 14 C 0.05 2.07 6.95 72.05 0.50 2.57 16 15 C 0.15 7.40 5.42 86.28 0.47 7.86 16 16 N -0.61 -32.03 3.04 -673.09 -2.05 -34.08 16 17 C -0.26 -14.85 8.88 84.04 0.75 -14.10 16 18 H 0.07 4.03 6.27 -2.91 -0.02 4.01 16 19 C -0.05 -2.89 4.99 84.87 0.42 -2.47 16 20 N -0.94 -57.44 11.16 21.65 0.24 -57.20 16 21 Si 0.97 46.55 29.58 68.60 2.03 48.58 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 25 C 0.13 5.99 3.04 45.20 0.14 6.12 16 26 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 27 C 0.14 5.87 4.50 86.40 0.39 6.26 16 28 N -0.32 -10.43 12.05 -47.38 -0.57 -11.01 16 29 N -0.48 -11.28 7.36 -48.00 -0.35 -11.63 16 30 H 0.44 7.88 8.96 -213.32 -1.91 5.96 16 31 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.13 2.07 7.66 -2.38 -0.02 2.05 16 36 H 0.16 1.68 7.93 -2.39 -0.02 1.66 16 37 H 0.14 1.25 5.90 -2.39 -0.01 1.23 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.07 3.86 6.23 -2.38 -0.01 3.85 16 45 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 46 H 0.07 2.96 7.39 -2.39 -0.02 2.94 16 47 H 0.05 2.63 6.80 -2.38 -0.02 2.61 16 Total: -1.00 -89.09 370.98 0.15 -88.94 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.92 Total: 16.50 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 5.81 Total: 24.07 kcal Atomic # 7 Polarization: -129.90 SS G_CDS: -5.16 Total: -135.06 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.61 Total: -43.03 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -89.09 0.15 -88.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074212787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.996 kcal (2) G-P(sol) polarization free energy of solvation -89.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds