Wall clock time and date at job start Tue Mar 31 2020 18:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35316 * 126.12695 * 2 1 4 4 C 1.39868 * 107.92084 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.89675 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.46855 * 124.99817 * 5 4 3 7 7 O 1.21280 * 120.00498 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99744 * 179.97438 * 6 5 4 9 9 C 1.46985 * 120.72131 * 0.02562 * 8 6 5 10 10 C 1.53152 * 108.62052 * 125.53897 * 9 8 6 11 11 C 1.52507 * 109.79587 * 54.41551 * 10 9 8 12 12 H 1.09003 * 108.93823 * 180.32810 * 11 10 9 13 13 O 1.42696 * 110.62018 * 60.62367 * 11 10 9 14 14 C 1.43082 * 113.86250 * 174.64311 * 13 11 10 15 15 C 1.53227 * 109.44997 * 61.64730 * 14 13 11 16 16 N 1.47176 * 108.70002 * 308.42195 * 15 14 13 17 17 C 1.36939 * 121.22412 * 230.96764 * 16 15 14 18 18 H 1.07995 * 120.00201 * 153.56280 * 17 16 15 19 19 C 1.38813 * 119.99673 * 333.55421 * 17 16 15 20 20 N 1.31618 * 120.00382 * 343.45056 * 19 17 16 21 21 Si 1.86797 * 119.99800 * 163.44544 * 19 17 16 22 22 H 1.48509 * 109.47012 * 90.00343 * 21 19 17 23 23 H 1.48499 * 109.47237 * 210.00095 * 21 19 17 24 24 H 1.48501 * 109.47483 * 330.00534 * 21 19 17 25 25 C 1.47497 * 117.03412 * 51.36904 * 16 15 14 26 26 H 1.09003 * 109.76697 * 186.93657 * 25 16 15 27 27 C 1.46845 * 120.74942 * 179.70519 * 8 6 5 28 28 N 1.30833 * 108.20020 * 0.26019 * 4 3 2 29 29 N 1.34952 * 126.13020 * 179.97438 * 2 1 3 30 30 H 0.97003 * 126.03523 * 0.03759 * 29 2 1 31 31 H 1.08996 * 109.47021 * 90.00306 * 1 2 3 32 32 H 1.09000 * 109.46568 * 210.00106 * 1 2 3 33 33 H 1.08994 * 109.47097 * 329.99698 * 1 2 3 34 34 H 1.08003 * 126.03357 * 359.97438 * 3 2 1 35 35 H 1.09006 * 109.46989 * 5.00147 * 5 4 3 36 36 H 1.09000 * 109.47044 * 245.00378 * 5 4 3 37 37 H 1.09002 * 109.64464 * 5.73929 * 9 8 6 38 38 H 1.09003 * 109.63494 * 245.32990 * 9 8 6 39 39 H 1.09002 * 109.41741 * 174.51656 * 10 9 8 40 40 H 1.09007 * 109.41596 * 294.31695 * 10 9 8 41 41 H 1.08997 * 109.47007 * 181.63847 * 14 13 11 42 42 H 1.08995 * 109.47441 * 301.64524 * 14 13 11 43 43 H 1.08996 * 109.60147 * 68.18438 * 15 14 13 44 44 H 1.09001 * 109.59731 * 188.50230 * 15 14 13 45 45 H 0.97004 * 120.00347 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.33826 * 114.31481 * 27 8 6 47 47 H 1.08997 * 109.58630 * 354.26453 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5396 0.0003 6 6 5.7387 1.1748 1.1646 7 8 5.4099 0.2852 1.9205 8 7 6.8952 1.8371 1.3658 9 6 7.3088 2.9182 0.4599 10 6 7.5804 4.1756 1.2910 11 6 8.5886 3.8599 2.3909 12 1 8.7670 4.7617 2.9767 13 8 9.8246 3.4209 1.8289 14 6 10.8611 3.2210 2.7948 15 6 10.4355 2.1285 3.7813 16 7 9.1005 2.4597 4.3050 17 6 8.8496 2.4740 5.6511 18 1 8.0612 3.0971 6.0469 19 6 9.6084 1.6875 6.5069 20 7 10.3329 0.7001 6.0247 21 14 9.6013 2.0304 8.3431 22 1 8.5160 1.2486 8.9885 23 1 10.9091 1.6357 8.9255 24 1 9.3731 3.4792 8.5754 25 6 8.0492 2.7648 3.3164 26 1 7.1511 3.1106 3.8282 27 6 7.7664 1.4996 2.4987 28 7 3.6334 -0.6524 -0.0047 29 7 2.3027 -1.0900 0.0005 30 1 2.0056 -2.0134 0.0004 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3632 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5138 34 1 1.9740 2.1211 -0.0004 35 1 4.5483 2.5821 0.0891 36 1 5.4034 1.4002 -0.9309 37 1 6.5140 3.1184 -0.2586 38 1 8.2158 2.6257 -0.0692 39 1 7.9813 4.9570 0.6454 40 1 6.6494 4.5207 1.7409 41 1 11.7764 2.9162 2.2876 42 1 11.0377 4.1506 3.3358 43 1 10.3990 1.1672 3.2688 44 1 11.1507 2.0784 4.6022 45 1 10.8635 0.1507 6.6227 46 1 8.7048 1.0913 2.1234 47 1 7.2743 0.7601 3.1304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074212788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:39 Heat of formation + Delta-G solvation = 26.326370 kcal Electronic energy + Delta-G solvation = -29788.095477 eV Core-core repulsion = 25780.502002 eV Total energy + Delta-G solvation = -4007.593475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.31058 -39.95240 -38.43995 -35.64145 -34.61104 -33.41829 -31.92573 -31.51609 -31.42978 -29.66394 -28.65039 -27.22063 -27.04694 -24.66050 -23.82088 -22.74587 -21.48320 -20.86655 -20.39299 -18.93089 -18.10390 -17.48239 -16.99450 -16.69865 -15.50342 -15.48395 -15.32134 -15.05837 -14.88816 -14.44427 -14.29883 -13.94548 -13.86479 -13.53384 -13.32473 -13.15423 -13.08194 -12.87340 -12.69622 -12.47064 -12.24723 -12.12108 -12.03982 -11.79412 -11.29950 -11.04602 -10.91045 -10.72640 -10.54853 -10.53375 -10.24809 -10.13284 -9.96138 -9.59453 -9.50688 -9.18947 -8.96136 -8.63217 -8.55924 -8.14128 -6.72346 -5.83902 -3.27974 1.84659 2.66736 2.81854 3.03566 3.35505 3.41418 3.43159 3.47106 4.35959 4.42643 4.45512 4.55846 4.83329 4.86627 5.04108 5.13239 5.16445 5.19652 5.32240 5.36177 5.40339 5.49432 5.51696 5.61195 5.68249 5.69735 5.82347 5.82891 6.03654 6.06633 6.09654 6.13265 6.20035 6.34669 6.39605 6.47779 6.57410 6.76113 6.82036 7.03693 7.12357 7.24786 7.51795 7.71249 7.72966 7.85785 7.92154 8.32760 8.61312 9.10767 9.72742 10.31230 11.23552 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003126 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.460844 B = 8953.796896 C =10206.510917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.078 3.922 3 C -0.265 4.265 4 C 0.091 3.909 5 C -0.060 4.060 6 C 0.512 3.488 7 O -0.526 6.526 8 N -0.608 5.608 9 C 0.112 3.888 10 C -0.123 4.123 11 C 0.080 3.920 12 H 0.052 0.948 13 O -0.388 6.388 14 C 0.040 3.960 15 C 0.136 3.864 16 N -0.584 5.584 17 C -0.254 4.254 18 H 0.068 0.932 19 C 0.005 3.995 20 N -0.900 5.900 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.134 3.866 26 H 0.072 0.928 27 C 0.109 3.891 28 N -0.259 5.259 29 N -0.477 5.477 30 H 0.435 0.565 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.028 0.972 44 H 0.095 0.905 45 H 0.255 0.745 46 H 0.067 0.933 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.552 4.952 -16.048 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.295 4.295 4 C -0.077 4.077 5 C -0.101 4.101 6 C 0.298 3.702 7 O -0.402 6.402 8 N -0.343 5.343 9 C -0.011 4.011 10 C -0.162 4.162 11 C 0.021 3.979 12 H 0.070 0.930 13 O -0.307 6.307 14 C -0.038 4.038 15 C 0.010 3.990 16 N -0.306 5.306 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.194 4.194 20 N -0.544 5.544 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.025 3.975 26 H 0.091 0.909 27 C -0.015 4.015 28 N -0.082 5.082 29 N -0.185 5.185 30 H 0.279 0.721 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.164 0.836 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.113 0.887 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.853 3.279 -15.683 20.541 hybrid contribution -0.515 0.328 1.329 1.462 sum -13.368 3.607 -14.354 19.944 Atomic orbital electron populations 1.20431 0.87420 1.03927 1.03162 1.21066 0.94486 0.87874 1.01593 1.21072 0.91400 0.99109 1.17900 1.21558 0.94510 0.91592 0.99992 1.20097 0.91939 0.98963 0.99149 1.20264 0.81319 0.82336 0.86282 1.90745 1.72179 1.30349 1.46906 1.48264 1.21203 1.35623 1.29189 1.21640 1.00652 0.86906 0.91924 1.21800 0.98810 0.97605 0.97939 1.22244 0.85070 0.96895 0.93701 0.93009 1.87713 1.20541 1.88287 1.34161 1.23316 0.89404 0.99581 0.91456 1.21468 0.88494 0.93169 0.95854 1.44308 1.03681 1.81261 1.01352 1.19142 1.18259 1.19734 0.81166 0.91379 1.25075 1.00788 0.95224 0.98330 1.70021 1.32286 1.17798 1.34246 0.86251 0.77126 0.78009 0.85109 1.21272 1.21495 1.20421 1.21584 0.93050 0.92724 0.90153 0.90940 1.22230 0.93112 0.99660 0.86480 1.77447 0.95398 1.12525 1.22791 1.46342 1.04249 1.08128 1.59817 0.72120 0.90301 0.91194 0.89615 0.83601 0.87145 0.87503 0.90359 0.90625 0.90433 0.90437 0.90187 0.94139 0.95359 0.88702 0.93453 0.91483 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.43 36.01 0.38 -0.16 16 2 C 0.08 0.81 7.21 -82.26 -0.59 0.22 16 3 C -0.27 -3.10 10.64 -40.01 -0.43 -3.53 16 4 C 0.09 1.30 6.01 -82.41 -0.50 0.81 16 5 C -0.06 -0.73 4.63 -29.04 -0.13 -0.87 16 6 C 0.51 8.86 7.69 -10.98 -0.08 8.78 16 7 O -0.53 -11.75 14.99 5.56 0.08 -11.67 16 8 N -0.61 -10.17 2.97 -172.76 -0.51 -10.69 16 9 C 0.11 1.40 6.16 -3.70 -0.02 1.38 16 10 C -0.12 -1.58 5.83 -26.90 -0.16 -1.73 16 11 C 0.08 1.41 2.76 -26.89 -0.07 1.33 16 12 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 13 O -0.39 -7.16 9.51 -35.23 -0.33 -7.49 16 14 C 0.04 0.77 6.97 37.28 0.26 1.03 16 15 C 0.14 3.19 4.91 -3.56 -0.02 3.18 16 16 N -0.58 -14.46 2.73 -163.96 -0.45 -14.91 16 17 C -0.25 -6.93 9.72 -15.06 -0.15 -7.08 16 18 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16 19 C 0.00 0.14 4.96 -17.43 -0.09 0.05 16 20 N -0.90 -25.98 11.14 55.49 0.62 -25.36 16 21 Si 0.91 21.73 29.58 -169.99 -5.03 16.70 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.13 2.81 3.01 -67.14 -0.20 2.60 16 26 H 0.07 1.57 7.99 -51.93 -0.41 1.16 16 27 C 0.11 2.28 5.61 -3.71 -0.02 2.26 16 28 N -0.26 -4.15 12.06 33.67 0.41 -3.74 16 29 N -0.48 -5.71 7.36 33.48 0.25 -5.46 16 30 H 0.44 3.81 8.96 -182.61 -1.64 2.17 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.11 0.99 7.69 -51.93 -0.40 0.59 16 36 H 0.11 1.08 7.93 -51.93 -0.41 0.67 16 37 H 0.08 0.69 5.95 -51.93 -0.31 0.38 16 38 H 0.08 0.99 7.94 -51.93 -0.41 0.58 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 44 H 0.09 2.46 6.14 -51.93 -0.32 2.14 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.07 1.50 6.51 -51.93 -0.34 1.16 16 47 H 0.09 2.17 7.01 -51.93 -0.36 1.81 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -35.76 370.82 -9.54 -45.30 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.33 Total: 3.46 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.82 Total: 8.28 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.31 Total: -60.16 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.25 Total: -19.16 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.76 -9.54 -45.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074212788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.623 kcal (2) G-P(sol) polarization free energy of solvation -35.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds