Wall clock time and date at job start Tue Mar 31 2020 18:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35316 * 126.12695 * 2 1 4 4 C 1.39868 * 107.92084 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.89675 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.46855 * 124.99817 * 5 4 3 7 7 O 1.21280 * 120.00498 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99744 * 179.97438 * 6 5 4 9 9 C 1.46985 * 120.72131 * 0.02562 * 8 6 5 10 10 C 1.53152 * 108.62052 * 125.53897 * 9 8 6 11 11 C 1.52507 * 109.79587 * 54.41551 * 10 9 8 12 12 H 1.09003 * 108.93823 * 180.32810 * 11 10 9 13 13 O 1.42696 * 110.62018 * 60.62367 * 11 10 9 14 14 C 1.43082 * 113.86250 * 174.64311 * 13 11 10 15 15 C 1.53227 * 109.44997 * 61.64730 * 14 13 11 16 16 N 1.47176 * 108.70002 * 308.42195 * 15 14 13 17 17 C 1.36939 * 121.22412 * 230.96764 * 16 15 14 18 18 H 1.07995 * 120.00201 * 153.56280 * 17 16 15 19 19 C 1.38813 * 119.99673 * 333.55421 * 17 16 15 20 20 N 1.31618 * 120.00382 * 343.45056 * 19 17 16 21 21 Si 1.86797 * 119.99800 * 163.44544 * 19 17 16 22 22 H 1.48509 * 109.47012 * 90.00343 * 21 19 17 23 23 H 1.48499 * 109.47237 * 210.00095 * 21 19 17 24 24 H 1.48501 * 109.47483 * 330.00534 * 21 19 17 25 25 C 1.47497 * 117.03412 * 51.36904 * 16 15 14 26 26 H 1.09003 * 109.76697 * 186.93657 * 25 16 15 27 27 C 1.46845 * 120.74942 * 179.70519 * 8 6 5 28 28 N 1.30833 * 108.20020 * 0.26019 * 4 3 2 29 29 N 1.34952 * 126.13020 * 179.97438 * 2 1 3 30 30 H 0.97003 * 126.03523 * 0.03759 * 29 2 1 31 31 H 1.08996 * 109.47021 * 90.00306 * 1 2 3 32 32 H 1.09000 * 109.46568 * 210.00106 * 1 2 3 33 33 H 1.08994 * 109.47097 * 329.99698 * 1 2 3 34 34 H 1.08003 * 126.03357 * 359.97438 * 3 2 1 35 35 H 1.09006 * 109.46989 * 5.00147 * 5 4 3 36 36 H 1.09000 * 109.47044 * 245.00378 * 5 4 3 37 37 H 1.09002 * 109.64464 * 5.73929 * 9 8 6 38 38 H 1.09003 * 109.63494 * 245.32990 * 9 8 6 39 39 H 1.09002 * 109.41741 * 174.51656 * 10 9 8 40 40 H 1.09007 * 109.41596 * 294.31695 * 10 9 8 41 41 H 1.08997 * 109.47007 * 181.63847 * 14 13 11 42 42 H 1.08995 * 109.47441 * 301.64524 * 14 13 11 43 43 H 1.08996 * 109.60147 * 68.18438 * 15 14 13 44 44 H 1.09001 * 109.59731 * 188.50230 * 15 14 13 45 45 H 0.97004 * 120.00347 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.33826 * 114.31481 * 27 8 6 47 47 H 1.08997 * 109.58630 * 354.26453 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5396 0.0003 6 6 5.7387 1.1748 1.1646 7 8 5.4099 0.2852 1.9205 8 7 6.8952 1.8371 1.3658 9 6 7.3088 2.9182 0.4599 10 6 7.5804 4.1756 1.2910 11 6 8.5886 3.8599 2.3909 12 1 8.7670 4.7617 2.9767 13 8 9.8246 3.4209 1.8289 14 6 10.8611 3.2210 2.7948 15 6 10.4355 2.1285 3.7813 16 7 9.1005 2.4597 4.3050 17 6 8.8496 2.4740 5.6511 18 1 8.0612 3.0971 6.0469 19 6 9.6084 1.6875 6.5069 20 7 10.3329 0.7001 6.0247 21 14 9.6013 2.0304 8.3431 22 1 8.5160 1.2486 8.9885 23 1 10.9091 1.6357 8.9255 24 1 9.3731 3.4792 8.5754 25 6 8.0492 2.7648 3.3164 26 1 7.1511 3.1106 3.8282 27 6 7.7664 1.4996 2.4987 28 7 3.6334 -0.6524 -0.0047 29 7 2.3027 -1.0900 0.0005 30 1 2.0056 -2.0134 0.0004 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3632 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5138 34 1 1.9740 2.1211 -0.0004 35 1 4.5483 2.5821 0.0891 36 1 5.4034 1.4002 -0.9309 37 1 6.5140 3.1184 -0.2586 38 1 8.2158 2.6257 -0.0692 39 1 7.9813 4.9570 0.6454 40 1 6.6494 4.5207 1.7409 41 1 11.7764 2.9162 2.2876 42 1 11.0377 4.1506 3.3358 43 1 10.3990 1.1672 3.2688 44 1 11.1507 2.0784 4.6022 45 1 10.8635 0.1507 6.6227 46 1 8.7048 1.0913 2.1234 47 1 7.2743 0.7601 3.1304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074212788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:38 Heat of formation + Delta-G solvation = -0.176544 kcal Electronic energy + Delta-G solvation = -29789.244730 eV Core-core repulsion = 25780.502002 eV Total energy + Delta-G solvation = -4008.742728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22075 -41.37524 -39.93313 -37.08091 -36.43407 -34.39020 -33.48633 -33.03000 -32.43398 -31.15014 -29.91214 -28.88649 -27.79354 -26.05056 -25.61260 -24.39737 -22.90360 -21.98540 -21.37381 -20.33286 -19.44973 -18.89510 -18.40504 -17.99217 -17.08885 -16.96531 -16.81784 -16.59933 -16.19253 -15.77421 -15.63951 -15.49175 -14.87242 -14.70999 -14.61479 -14.42385 -14.35269 -14.04006 -13.71464 -13.67476 -13.47934 -13.34023 -13.09362 -13.07862 -12.81260 -12.79034 -12.57106 -12.42737 -12.19417 -12.10554 -11.84432 -11.63852 -11.45458 -11.18846 -10.82398 -10.75871 -10.50864 -10.22644 -9.63426 -9.47768 -8.70908 -7.94184 -5.42131 0.98823 1.42461 1.42965 1.53374 1.68753 1.73432 2.02041 2.18848 2.45814 2.93075 3.20386 3.47079 3.56234 3.69285 3.86963 4.00920 4.07570 4.17788 4.22093 4.25316 4.30401 4.46194 4.46661 4.51096 4.56995 4.60627 4.68392 4.76001 4.79673 4.86646 4.89124 4.91481 4.95490 5.02605 5.09395 5.13329 5.26025 5.30367 5.35761 5.50311 5.58327 5.60005 5.73428 6.25220 6.37834 6.50143 6.55906 6.80890 7.02316 7.28236 7.69987 8.25410 9.10556 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003126 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.460844 B = 8953.796896 C =10206.510917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.084 3.916 3 C -0.282 4.282 4 C 0.072 3.928 5 C -0.048 4.048 6 C 0.505 3.495 7 O -0.589 6.589 8 N -0.606 5.606 9 C 0.106 3.894 10 C -0.115 4.115 11 C 0.084 3.916 12 H 0.051 0.949 13 O -0.382 6.382 14 C 0.054 3.946 15 C 0.143 3.857 16 N -0.603 5.603 17 C -0.266 4.266 18 H 0.067 0.933 19 C -0.049 4.049 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.289 1.289 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.131 3.869 26 H 0.060 0.940 27 C 0.128 3.872 28 N -0.323 5.323 29 N -0.480 5.480 30 H 0.444 0.556 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.174 0.826 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.047 0.953 43 H -0.003 1.003 44 H 0.066 0.934 45 H 0.252 0.748 46 H 0.045 0.955 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.494 8.117 -18.423 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C -0.311 4.311 4 C -0.095 4.095 5 C -0.089 4.089 6 C 0.294 3.706 7 O -0.469 6.469 8 N -0.339 5.339 9 C -0.015 4.015 10 C -0.154 4.154 11 C 0.025 3.975 12 H 0.069 0.931 13 O -0.301 6.301 14 C -0.024 4.024 15 C 0.017 3.983 16 N -0.326 5.326 17 C -0.395 4.395 18 H 0.085 0.915 19 C -0.244 4.244 20 N -0.578 5.578 21 Si 0.799 3.201 22 H -0.216 1.216 23 H -0.214 1.214 24 H -0.190 1.190 25 C 0.024 3.976 26 H 0.078 0.922 27 C 0.002 3.998 28 N -0.146 5.146 29 N -0.190 5.190 30 H 0.289 0.711 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.191 0.809 35 H 0.173 0.827 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.015 0.985 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -14.804 6.494 -18.117 24.281 hybrid contribution -0.013 -0.727 2.044 2.170 sum -14.817 5.767 -16.073 22.608 Atomic orbital electron populations 1.20590 0.84071 1.05101 1.04806 1.21830 0.96438 0.87000 0.99180 1.21484 0.90439 1.00827 1.18371 1.22016 0.96203 0.91448 0.99801 1.20234 0.90535 1.00864 0.97285 1.21282 0.81357 0.81075 0.86876 1.90721 1.73588 1.33098 1.49459 1.48313 1.20511 1.36731 1.28354 1.22044 1.02631 0.85031 0.91753 1.21874 0.98051 0.98588 0.96838 1.22330 0.85561 0.94671 0.94952 0.93111 1.87733 1.20674 1.88133 1.33569 1.23127 0.90507 0.97916 0.90855 1.21300 0.87667 0.93688 0.95611 1.44560 1.05191 1.81378 1.01456 1.19458 1.17928 1.19306 0.82845 0.91516 1.25859 1.00901 0.95170 1.02509 1.70187 1.33354 1.18893 1.35415 0.85227 0.76688 0.78285 0.79929 1.21647 1.21436 1.19002 1.21746 0.91995 0.93811 0.90092 0.92155 1.21598 0.92245 0.98374 0.87550 1.77346 0.97833 1.14103 1.25318 1.46403 1.03570 1.09237 1.59754 0.71128 0.88255 0.90155 0.88288 0.80854 0.82705 0.84733 0.85020 0.90758 0.86661 0.88645 0.87485 0.93444 0.98476 0.91587 0.93939 0.93677 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.43 71.24 0.74 -0.02 16 2 C 0.08 1.60 7.21 41.41 0.30 1.90 16 3 C -0.28 -5.92 10.64 21.99 0.23 -5.69 16 4 C 0.07 1.96 6.01 43.10 0.26 2.22 16 5 C -0.05 -1.05 4.63 29.10 0.13 -0.91 16 6 C 0.51 17.36 7.69 87.65 0.67 18.03 16 7 O -0.59 -27.71 14.99 -3.03 -0.05 -27.75 16 8 N -0.61 -19.87 2.97 -818.87 -2.44 -22.30 16 9 C 0.11 2.25 6.16 86.34 0.53 2.78 16 10 C -0.12 -2.44 5.83 30.48 0.18 -2.27 16 11 C 0.08 2.78 2.76 30.49 0.08 2.87 16 12 H 0.05 1.72 8.12 -2.39 -0.02 1.70 16 13 O -0.38 -13.41 9.51 -148.98 -1.42 -14.83 16 14 C 0.05 2.03 6.97 72.06 0.50 2.53 16 15 C 0.14 7.04 4.91 86.33 0.42 7.46 16 16 N -0.60 -31.16 2.73 -672.66 -1.84 -32.99 16 17 C -0.27 -15.08 9.72 84.03 0.82 -14.26 16 18 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 19 C -0.05 -2.79 4.96 84.86 0.42 -2.37 16 20 N -0.93 -56.73 11.14 21.65 0.24 -56.49 16 21 Si 0.97 46.05 29.58 68.60 2.03 48.08 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.13 5.65 3.01 44.96 0.14 5.79 16 26 H 0.06 2.70 7.99 -2.39 -0.02 2.68 16 27 C 0.13 5.66 5.61 86.41 0.48 6.15 16 28 N -0.32 -10.45 12.06 -47.38 -0.57 -11.02 16 29 N -0.48 -11.37 7.36 -48.00 -0.35 -11.72 16 30 H 0.44 7.86 8.96 -213.33 -1.91 5.94 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.16 1.93 7.69 -2.38 -0.02 1.91 16 36 H 0.13 2.18 7.93 -2.39 -0.02 2.16 16 37 H 0.13 1.46 5.95 -2.39 -0.01 1.44 16 38 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 39 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.00 -0.15 7.14 -2.39 -0.02 -0.17 16 44 H 0.07 3.61 6.14 -2.39 -0.01 3.60 16 45 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 46 H 0.04 2.16 6.51 -2.39 -0.02 2.14 16 47 H 0.03 1.82 7.01 -2.39 -0.02 1.80 16 Total: -1.00 -87.24 370.82 0.62 -86.62 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -0.92 Total: 18.21 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: 5.92 Total: 24.20 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -4.96 Total: -134.53 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -1.46 Total: -42.58 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -87.24 0.62 -86.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074212788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.445 kcal (2) G-P(sol) polarization free energy of solvation -87.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds