Wall clock time and date at job start Tue Mar 31 2020 18:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35314 * 126.12658 * 2 1 4 4 C 1.39870 * 107.92159 * 180.14541 * 3 2 1 5 5 C 1.50706 * 125.90126 * 179.86657 * 4 3 2 6 6 C 1.50701 * 109.47006 * 124.71221 * 5 4 3 7 7 O 1.21275 * 120.00357 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99705 * 179.97438 * 6 5 4 9 9 C 1.46995 * 120.72128 * 0.02562 * 8 6 5 10 10 C 1.53153 * 108.43552 * 234.57330 * 9 8 6 11 11 C 1.52504 * 109.79434 * 305.46105 * 10 9 8 12 12 H 1.09006 * 108.93397 * 179.01334 * 11 10 9 13 13 O 1.42687 * 110.61999 * 298.71347 * 11 10 9 14 14 C 1.43062 * 113.88365 * 185.33719 * 13 11 10 15 15 C 1.53235 * 109.45098 * 298.35816 * 14 13 11 16 16 N 1.47177 * 108.68858 * 51.58666 * 15 14 13 17 17 C 1.36937 * 121.22185 * 129.04330 * 16 15 14 18 18 H 1.07993 * 120.00102 * 206.16475 * 17 16 15 19 19 C 1.38809 * 119.99709 * 26.44816 * 17 16 15 20 20 N 1.31621 * 120.00392 * 16.52278 * 19 17 16 21 21 Si 1.86805 * 119.99607 * 196.52524 * 19 17 16 22 22 H 1.48495 * 109.47095 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47326 * 119.99803 * 21 19 17 24 24 H 1.48507 * 109.46820 * 239.99960 * 21 19 17 25 25 C 1.47593 * 117.55140 * 309.31830 * 16 15 14 26 26 H 1.08996 * 110.31655 * 172.03750 * 25 16 15 27 27 C 1.46785 * 120.72255 * 180.02562 * 8 6 5 28 28 N 1.30835 * 108.19976 * 359.60017 * 4 3 2 29 29 N 1.34952 * 126.12931 * 179.70643 * 2 1 3 30 30 H 0.97001 * 126.03503 * 359.97438 * 29 2 1 31 31 H 1.08993 * 109.47043 * 270.31213 * 1 2 3 32 32 H 1.08999 * 109.46670 * 30.31959 * 1 2 3 33 33 H 1.09003 * 109.46443 * 150.31362 * 1 2 3 34 34 H 1.08003 * 126.03965 * 0.02813 * 3 2 1 35 35 H 1.09001 * 109.46718 * 4.71292 * 5 4 3 36 36 H 1.08997 * 109.46971 * 244.71443 * 5 4 3 37 37 H 1.08998 * 109.64009 * 114.89117 * 9 8 6 38 38 H 1.09004 * 109.64085 * 354.25745 * 9 8 6 39 39 H 1.09001 * 109.41433 * 185.36324 * 10 9 8 40 40 H 1.09003 * 109.41843 * 65.56535 * 10 9 8 41 41 H 1.08998 * 109.47878 * 178.36254 * 14 13 11 42 42 H 1.09001 * 109.48140 * 58.35215 * 14 13 11 43 43 H 1.09004 * 109.59565 * 291.82916 * 15 14 13 44 44 H 1.09000 * 109.73436 * 171.43005 * 15 14 13 45 45 H 0.97005 * 119.99740 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.51529 * 245.59931 * 27 8 6 47 47 H 1.09000 * 109.52138 * 5.77558 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 -0.0034 5 6 4.8544 1.5395 -0.0074 6 6 5.7389 1.1794 1.1584 7 8 5.4106 0.2924 1.9174 8 7 6.8954 1.8425 1.3568 9 6 7.3090 2.9199 0.4464 10 6 8.7134 2.6011 -0.0749 11 6 9.6606 2.3743 1.0986 12 1 10.6506 2.1315 0.7122 13 8 9.7533 3.5487 1.9037 14 6 10.7167 3.4542 2.9571 15 6 10.3218 2.3208 3.9097 16 7 10.0861 1.1015 3.1199 17 6 10.6873 -0.0842 3.4483 18 1 10.8637 -0.8293 2.6867 19 6 11.0646 -0.3308 4.7611 20 7 10.5705 0.4018 5.7366 21 14 12.2739 -1.7023 5.1434 22 1 12.6776 -2.3724 3.8812 23 1 13.4738 -1.1334 5.8080 24 1 11.6311 -2.6919 6.0450 25 6 9.1828 1.2052 1.9572 26 1 9.2019 0.2811 1.3796 27 6 7.7692 1.5045 2.4867 28 7 3.6334 -0.6524 0.0033 29 7 2.3027 -1.0900 0.0056 30 1 2.0056 -2.0133 0.0107 31 1 -0.3633 0.0056 1.0276 32 1 -0.3633 0.8871 -0.5188 33 1 -0.3632 -0.8928 -0.5090 34 1 1.9741 2.1211 0.0004 35 1 4.5484 2.5823 0.0771 36 1 5.4034 1.3963 -0.9380 37 1 7.3241 3.8681 0.9838 38 1 6.6126 2.9803 -0.3901 39 1 9.0746 3.4353 -0.6763 40 1 8.6762 1.7018 -0.6897 41 1 10.7488 4.3955 3.5058 42 1 11.6994 3.2469 2.5335 43 1 9.4110 2.5925 4.4434 44 1 11.1255 2.1439 4.6245 45 1 10.8345 0.2296 6.6540 46 1 7.8104 2.3452 3.1794 47 1 7.3771 0.6269 3.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074212789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:43 Heat of formation + Delta-G solvation = 26.752334 kcal Electronic energy + Delta-G solvation = -29781.141813 eV Core-core repulsion = 25773.566809 eV Total energy + Delta-G solvation = -4007.575004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.30970 -39.95089 -38.44182 -35.64627 -34.61034 -33.41682 -31.93186 -31.51825 -31.41539 -29.65315 -28.65396 -27.21502 -27.04306 -24.65869 -23.80869 -22.77086 -21.49088 -20.85499 -20.38580 -18.91388 -18.12041 -17.48875 -16.97376 -16.71149 -15.55437 -15.40698 -15.33445 -15.05049 -14.93028 -14.43120 -14.27207 -13.92606 -13.81045 -13.66953 -13.29435 -13.10551 -13.05320 -12.91351 -12.66738 -12.44505 -12.31317 -12.19501 -11.97207 -11.77909 -11.29923 -11.03864 -10.91526 -10.74193 -10.56765 -10.51516 -10.20665 -10.12576 -9.95577 -9.59745 -9.50888 -9.18701 -8.96240 -8.63330 -8.56236 -8.13731 -6.72409 -5.83316 -3.26681 1.84915 2.66971 2.82030 3.02762 3.35414 3.42885 3.44997 3.48088 4.35113 4.42896 4.45693 4.56132 4.82401 4.86245 5.04038 5.11887 5.17385 5.20673 5.32683 5.37200 5.40245 5.48556 5.50919 5.61230 5.68360 5.70176 5.81381 5.82834 6.02933 6.07057 6.10280 6.12711 6.19758 6.34026 6.39744 6.47237 6.57355 6.75653 6.82294 7.04131 7.12349 7.24979 7.51442 7.71609 7.74221 7.85934 7.91879 8.33271 8.61515 9.11912 9.73518 10.30816 11.24411 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.003099 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.454722 B = 9032.437173 C =10328.362943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.078 3.922 3 C -0.266 4.266 4 C 0.090 3.910 5 C -0.060 4.060 6 C 0.512 3.488 7 O -0.526 6.526 8 N -0.609 5.609 9 C 0.112 3.888 10 C -0.123 4.123 11 C 0.081 3.919 12 H 0.051 0.949 13 O -0.387 6.387 14 C 0.040 3.960 15 C 0.137 3.863 16 N -0.585 5.585 17 C -0.253 4.253 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.900 5.900 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.134 3.866 26 H 0.074 0.926 27 C 0.108 3.892 28 N -0.257 5.257 29 N -0.477 5.477 30 H 0.435 0.565 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.146 0.854 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.028 0.972 44 H 0.096 0.904 45 H 0.255 0.745 46 H 0.067 0.933 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.763 6.564 -14.690 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C -0.295 4.295 4 C -0.077 4.077 5 C -0.102 4.102 6 C 0.298 3.702 7 O -0.402 6.402 8 N -0.343 5.343 9 C -0.011 4.011 10 C -0.162 4.162 11 C 0.021 3.979 12 H 0.069 0.931 13 O -0.306 6.306 14 C -0.038 4.038 15 C 0.012 3.988 16 N -0.308 5.308 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.544 5.544 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.025 3.975 26 H 0.092 0.908 27 C -0.015 4.015 28 N -0.080 5.080 29 N -0.185 5.185 30 H 0.279 0.721 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.114 0.886 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.267 5.163 -14.088 20.705 hybrid contribution 0.190 -0.632 0.506 0.832 sum -14.077 4.531 -13.583 20.079 Atomic orbital electron populations 1.20432 0.87433 1.03686 1.03385 1.21066 0.94479 0.87886 1.01626 1.21067 0.91408 0.99086 1.17952 1.21567 0.94500 0.91611 1.00066 1.20098 0.91926 0.98965 0.99165 1.20267 0.81498 0.82142 0.86322 1.90743 1.72248 1.30330 1.46854 1.48275 1.20858 1.35750 1.29458 1.21656 0.95528 0.90911 0.93015 1.21795 0.94877 1.02508 0.96979 1.22118 0.97899 0.87121 0.90742 0.93134 1.87707 1.61381 1.36619 1.44905 1.23318 0.90908 1.00217 0.89371 1.21470 1.00908 0.83987 0.92483 1.44305 1.49614 1.06561 1.30278 1.19218 1.32110 0.94696 0.92182 0.91308 1.25056 1.00435 0.98480 0.95502 1.70034 1.43635 1.41841 0.98913 0.86177 0.80782 0.81495 0.78053 1.20215 1.21510 1.21627 1.21641 0.88918 0.96193 0.90700 0.90770 1.22381 0.89836 1.01807 0.87490 1.77467 0.95353 1.12514 1.22639 1.46352 1.04262 1.08136 1.59785 0.72108 0.90217 0.89649 0.91257 0.83630 0.87212 0.87450 0.90567 0.90333 0.90429 0.90444 0.90155 0.94146 0.95351 0.88633 0.93541 0.91474 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.43 36.01 0.38 -0.15 16 2 C 0.08 0.80 7.21 -82.26 -0.59 0.21 16 3 C -0.27 -3.09 10.64 -40.01 -0.43 -3.52 16 4 C 0.09 1.29 6.02 -82.40 -0.50 0.79 16 5 C -0.06 -0.73 4.63 -29.03 -0.13 -0.87 16 6 C 0.51 8.85 7.69 -10.98 -0.08 8.76 16 7 O -0.53 -11.74 14.97 5.56 0.08 -11.66 16 8 N -0.61 -10.16 2.96 -172.42 -0.51 -10.68 16 9 C 0.11 1.40 6.18 -3.69 -0.02 1.38 16 10 C -0.12 -1.60 5.82 -26.91 -0.16 -1.76 16 11 C 0.08 1.42 2.71 -27.13 -0.07 1.35 16 12 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 13 O -0.39 -7.13 9.59 -35.23 -0.34 -7.47 16 14 C 0.04 0.76 6.97 37.28 0.26 1.02 16 15 C 0.14 3.22 4.94 -3.55 -0.02 3.20 16 16 N -0.59 -14.52 2.71 -163.79 -0.44 -14.97 16 17 C -0.25 -6.93 9.69 -15.06 -0.15 -7.08 16 18 H 0.07 1.88 7.88 -52.49 -0.41 1.46 16 19 C 0.00 0.12 4.96 -17.43 -0.09 0.03 16 20 N -0.90 -26.01 11.13 55.49 0.62 -25.39 16 21 Si 0.91 21.86 29.59 -169.99 -5.03 16.83 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C 0.13 2.83 3.03 -67.01 -0.20 2.63 16 26 H 0.07 1.63 7.99 -51.93 -0.42 1.22 16 27 C 0.11 2.27 5.64 -3.42 -0.02 2.25 16 28 N -0.26 -4.13 12.04 33.67 0.41 -3.73 16 29 N -0.48 -5.72 7.36 33.48 0.25 -5.47 16 30 H 0.44 3.84 8.96 -182.61 -1.64 2.20 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.11 0.99 7.91 -51.93 -0.41 0.58 16 36 H 0.11 1.08 7.71 -51.93 -0.40 0.68 16 37 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 38 H 0.08 0.69 5.95 -51.93 -0.31 0.38 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 44 H 0.10 2.48 6.12 -51.93 -0.32 2.16 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.07 1.49 6.56 -51.93 -0.34 1.15 16 47 H 0.09 2.18 7.00 -51.93 -0.36 1.81 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -35.78 370.91 -9.53 -45.31 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.33 Total: 3.38 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.82 Total: 8.25 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.32 Total: -60.23 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.25 Total: -19.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.78 -9.53 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074212789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.067 kcal (2) G-P(sol) polarization free energy of solvation -35.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds