Wall clock time and date at job start Tue Mar 31 2020 18:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30449 * 125.99581 * 2 1 4 4 N 1.39927 * 108.90013 * 180.26275 * 3 2 1 5 5 H 0.97003 * 125.75684 * 179.76898 * 4 3 2 6 6 C 1.34269 * 108.49404 * 359.75094 * 4 3 2 7 7 C 1.50697 * 126.29253 * 180.02562 * 6 4 3 8 8 C 1.38043 * 107.41230 * 359.97438 * 6 4 3 9 9 C 1.47432 * 126.41114 * 179.97438 * 8 6 4 10 10 O 1.21601 * 119.99671 * 90.00884 * 9 8 6 11 11 N 1.34773 * 120.00140 * 270.00163 * 9 8 6 12 12 C 1.46976 * 120.72084 * 0.02562 * 11 9 8 13 13 C 1.53161 * 108.44383 * 125.44305 * 12 11 9 14 14 C 1.52507 * 109.80108 * 54.51348 * 13 12 11 15 15 H 1.08995 * 108.93603 * 180.33994 * 14 13 12 16 16 O 1.42693 * 110.62397 * 61.30467 * 14 13 12 17 17 C 1.43073 * 113.86656 * 174.64123 * 16 14 13 18 18 C 1.52804 * 109.52095 * 61.51425 * 17 16 14 19 19 N 1.47167 * 108.92704 * 308.65695 * 18 17 16 20 20 C 1.36938 * 121.22522 * 230.90860 * 19 18 17 21 21 H 1.07998 * 120.00074 * 149.42602 * 20 19 18 22 22 C 1.38812 * 119.99938 * 329.42021 * 20 19 18 23 23 N 1.31620 * 120.00039 * 142.81861 * 22 20 19 24 24 Si 1.86802 * 120.00050 * 322.82565 * 22 20 19 25 25 H 1.48502 * 109.46679 * 275.21256 * 24 22 20 26 26 H 1.48501 * 109.47249 * 35.20977 * 24 22 20 27 27 H 1.48491 * 109.47256 * 155.21545 * 24 22 20 28 28 C 1.47593 * 117.55062 * 50.63078 * 19 18 17 29 29 H 1.09009 * 110.31616 * 186.93205 * 28 19 18 30 30 C 1.46796 * 120.72128 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.47374 * 270.14869 * 1 2 3 32 32 H 1.09006 * 109.46785 * 30.14553 * 1 2 3 33 33 H 1.08999 * 109.47741 * 150.14102 * 1 2 3 34 34 H 1.09009 * 109.46814 * 269.97336 * 7 6 4 35 35 H 1.08995 * 109.47462 * 29.97138 * 7 6 4 36 36 H 1.08999 * 109.47056 * 149.97874 * 7 6 4 37 37 H 1.09003 * 109.64364 * 245.12395 * 12 11 9 38 38 H 1.08996 * 109.64558 * 5.75514 * 12 11 9 39 39 H 1.09002 * 109.41599 * 174.62261 * 13 12 11 40 40 H 1.09010 * 109.41320 * 294.41307 * 13 12 11 41 41 H 1.09006 * 109.47594 * 181.63937 * 17 16 14 42 42 H 1.08998 * 109.47826 * 301.65239 * 17 16 14 43 43 H 1.08998 * 109.53494 * 188.79331 * 18 17 16 44 44 H 1.09003 * 109.44068 * 68.46056 * 18 17 16 45 45 H 0.96998 * 119.99935 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.52619 * 114.41191 * 30 11 9 47 47 H 1.09001 * 109.57172 * 354.25254 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6441 -0.0061 5 1 4.3843 1.2299 -0.0105 6 6 3.6439 -0.6982 -0.0043 7 6 4.8799 -1.5603 -0.0086 8 6 2.3372 -1.1433 0.0035 9 6 1.8914 -2.5486 0.0074 10 8 1.7133 -3.1270 1.0622 11 7 1.6812 -3.1922 -1.1579 12 6 1.8919 -2.5086 -2.4418 13 6 2.8648 -3.3425 -3.2808 14 6 2.3440 -4.7701 -3.4089 15 1 3.0491 -5.3519 -4.0026 16 8 1.0791 -4.7863 -4.0691 17 6 0.5816 -6.1012 -4.3350 18 6 0.3786 -6.8465 -3.0165 19 7 1.6141 -6.7563 -2.2220 20 6 2.1976 -7.8739 -1.6876 21 1 3.2687 -7.9128 -1.5547 22 6 1.4124 -8.9568 -1.3165 23 7 1.8522 -10.1832 -1.5031 24 14 -0.2685 -8.6734 -0.5525 25 1 -0.1179 -8.4578 0.9090 26 1 -0.8963 -7.4763 -1.1674 27 1 -1.1275 -9.8608 -0.7917 28 6 2.2046 -5.4176 -2.0277 29 1 3.1721 -5.4990 -1.5322 30 6 1.2367 -4.5912 -1.1724 31 1 -0.3634 0.0027 1.0277 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3634 -0.8912 -0.5116 34 1 5.1729 -1.7700 -1.0374 35 1 5.6895 -1.0373 0.5003 36 1 4.6712 -2.4972 0.5078 37 1 0.9417 -2.4155 -2.9677 38 1 2.3149 -1.5197 -2.2653 39 1 2.9587 -2.9005 -4.2727 40 1 3.8416 -3.3551 -2.7970 41 1 -0.3689 -6.0301 -4.8638 42 1 1.2997 -6.6441 -4.9495 43 1 0.1507 -7.8926 -3.2206 44 1 -0.4444 -6.3913 -2.4655 45 1 1.3034 -10.9399 -1.2441 46 1 0.2342 -4.6506 -1.5961 47 1 1.2257 -4.9814 -0.1547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074359301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:56 Heat of formation + Delta-G solvation = 29.559262 kcal Electronic energy + Delta-G solvation = -30938.103149 eV Core-core repulsion = 26930.649862 eV Total energy + Delta-G solvation = -4007.453286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64929 -39.95367 -38.42601 -35.77203 -34.79314 -33.71548 -32.20892 -31.79398 -31.49176 -29.91466 -28.45915 -27.76448 -27.28049 -25.01988 -23.91117 -23.06272 -22.05965 -21.37718 -20.29171 -19.24723 -18.39095 -17.70621 -17.01518 -16.61673 -15.78060 -15.53550 -15.46821 -15.25975 -15.08436 -14.44783 -14.23711 -14.14848 -13.89896 -13.60382 -13.47213 -13.29216 -13.18601 -12.66912 -12.62704 -12.60012 -12.51221 -12.46659 -12.19685 -12.13782 -11.81138 -11.42566 -11.02764 -10.97285 -10.87894 -10.59540 -10.51767 -10.19098 -9.87765 -9.71115 -9.53677 -9.49041 -9.29012 -8.67441 -8.42498 -8.28820 -7.00111 -6.14343 -3.36649 1.52669 2.30990 2.50969 2.79032 3.33256 3.39705 3.49115 3.57053 4.16245 4.30085 4.45482 4.50746 4.71143 4.74107 4.92277 5.05857 5.09432 5.14704 5.20014 5.23773 5.38180 5.48252 5.53898 5.55988 5.60152 5.63685 5.69727 5.73537 5.77880 5.86956 5.88715 5.92283 6.04479 6.06894 6.17359 6.24919 6.31619 6.45825 6.59875 6.61832 6.79408 6.84152 6.96385 7.41416 7.67842 7.70112 7.84536 8.21548 8.45266 8.83229 9.61820 10.03389 10.99981 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.003925 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.413818 B = 7131.190232 C = 7462.761179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.116 3.884 3 N -0.297 5.297 4 N -0.465 5.465 5 H 0.440 0.560 6 C 0.128 3.872 7 C -0.101 4.101 8 C -0.271 4.271 9 C 0.592 3.408 10 O -0.537 6.537 11 N -0.597 5.597 12 C 0.118 3.882 13 C -0.122 4.122 14 C 0.082 3.918 15 H 0.056 0.944 16 O -0.384 6.384 17 C 0.047 3.953 18 C 0.106 3.894 19 N -0.591 5.591 20 C -0.278 4.278 21 H 0.081 0.919 22 C 0.049 3.951 23 N -0.876 5.876 24 Si 0.833 3.167 25 H -0.286 1.286 26 H -0.255 1.255 27 H -0.296 1.296 28 C 0.135 3.865 29 H 0.083 0.917 30 C 0.100 3.900 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.265 0.735 46 H 0.067 0.933 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 20.360 -3.518 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 N -0.120 5.120 4 N -0.172 5.172 5 H 0.284 0.716 6 C -0.003 4.003 7 C -0.159 4.159 8 C -0.286 4.286 9 C 0.378 3.622 10 O -0.413 6.413 11 N -0.330 5.330 12 C -0.006 4.006 13 C -0.160 4.160 14 C 0.022 3.978 15 H 0.074 0.926 16 O -0.304 6.304 17 C -0.031 4.031 18 C -0.020 4.020 19 N -0.314 5.314 20 C -0.405 4.405 21 H 0.098 0.902 22 C -0.154 4.154 23 N -0.514 5.514 24 Si 0.660 3.340 25 H -0.213 1.213 26 H -0.180 1.180 27 H -0.222 1.222 28 C 0.027 3.973 29 H 0.102 0.898 30 C -0.024 4.024 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.883 21.209 -2.986 21.612 hybrid contribution -0.426 -0.844 0.647 1.145 sum 2.457 20.366 -2.340 20.646 Atomic orbital electron populations 1.20264 0.86170 1.03631 1.03618 1.22315 0.96928 0.88864 0.97021 1.77060 0.86183 1.22143 1.26650 1.45943 1.07520 1.04700 1.59004 0.71560 1.21376 0.96210 0.84901 0.97862 1.20600 0.92042 0.99127 1.04134 1.19907 0.92103 0.94517 1.22057 1.17353 0.76983 0.84365 0.83463 1.90793 1.51830 1.67771 1.30941 1.48180 1.66208 1.13245 1.05344 1.21571 0.99935 0.95265 0.83788 1.21800 0.98813 0.94888 1.00525 1.22212 0.85875 0.95222 0.94447 0.92569 1.87738 1.36250 1.27959 1.78424 1.23060 0.98419 0.83694 0.97957 1.21951 0.89435 0.99856 0.90711 1.44546 1.27871 1.01536 1.57496 1.18651 0.92184 0.90352 1.39290 0.90189 1.25293 0.97274 0.94660 0.98146 1.70097 1.39247 0.98087 1.44003 0.87675 0.86254 0.78121 0.81989 1.21333 1.18030 1.22250 1.21705 0.96991 0.85758 0.92887 0.89842 1.22355 0.98929 0.78379 1.02715 0.89959 0.90370 0.90213 0.89303 0.90444 0.88888 0.90761 0.90391 0.90411 0.90445 0.89781 0.93255 0.90580 0.94546 0.92569 0.91496 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.28 36.00 0.37 -0.46 16 2 C 0.12 1.48 7.26 -82.02 -0.60 0.88 16 3 N -0.30 -3.61 12.63 33.90 0.43 -3.18 16 4 N -0.47 -4.41 7.29 33.86 0.25 -4.16 16 5 H 0.44 2.55 8.96 -182.73 -1.64 0.91 16 6 C 0.13 1.37 7.20 -81.60 -0.59 0.78 16 7 C -0.10 -0.81 10.25 36.00 0.37 -0.44 16 8 C -0.27 -3.67 3.87 -105.06 -0.41 -4.08 16 9 C 0.59 9.75 6.86 -12.52 -0.09 9.66 16 10 O -0.54 -11.11 16.52 5.28 0.09 -11.02 16 11 N -0.60 -9.27 2.96 -174.03 -0.52 -9.78 16 12 C 0.12 1.47 6.17 -3.70 -0.02 1.44 16 13 C -0.12 -1.48 5.82 -26.90 -0.16 -1.63 16 14 C 0.08 1.31 2.73 -26.89 -0.07 1.24 16 15 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 16 O -0.38 -6.46 9.59 -35.23 -0.34 -6.79 16 17 C 0.05 0.80 6.96 37.06 0.26 1.06 16 18 C 0.11 2.20 4.08 -3.78 -0.02 2.18 16 19 N -0.59 -13.40 2.38 -164.11 -0.39 -13.79 16 20 C -0.28 -7.44 9.88 -15.06 -0.15 -7.59 16 21 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 22 C 0.05 1.36 4.79 -17.43 -0.08 1.28 16 23 N -0.88 -25.75 13.97 55.49 0.78 -24.97 16 24 Si 0.83 20.94 26.99 -169.99 -4.59 16.35 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.26 -6.05 4.81 56.52 0.27 -5.77 16 27 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 28 C 0.13 2.57 3.03 -67.06 -0.20 2.36 16 29 H 0.08 1.65 7.99 -51.92 -0.42 1.23 16 30 C 0.10 1.87 5.62 -3.70 -0.02 1.85 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 34 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 37 H 0.07 0.95 7.95 -51.93 -0.41 0.54 16 38 H 0.08 0.87 6.27 -51.93 -0.33 0.54 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 43 H 0.08 1.69 6.39 -51.93 -0.33 1.36 16 44 H 0.04 0.77 5.56 -51.93 -0.29 0.49 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.07 1.30 6.58 -51.93 -0.34 0.96 16 47 H 0.09 1.95 7.00 -51.93 -0.36 1.59 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -33.70 368.42 -8.58 -42.28 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.44 Total: 0.98 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -1.40 Total: 8.54 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.54 Total: -55.88 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.25 Total: -17.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.59 Total: 16.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.70 -8.58 -42.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074359301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.837 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds