Wall clock time and date at job start Tue Mar 31 2020 18:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30449 * 125.99581 * 2 1 4 4 N 1.39927 * 108.90013 * 180.26275 * 3 2 1 5 5 H 0.97003 * 125.75684 * 179.76898 * 4 3 2 6 6 C 1.34269 * 108.49404 * 359.75094 * 4 3 2 7 7 C 1.50697 * 126.29253 * 180.02562 * 6 4 3 8 8 C 1.38043 * 107.41230 * 359.97438 * 6 4 3 9 9 C 1.47432 * 126.41114 * 179.97438 * 8 6 4 10 10 O 1.21601 * 119.99671 * 90.00884 * 9 8 6 11 11 N 1.34773 * 120.00140 * 270.00163 * 9 8 6 12 12 C 1.46976 * 120.72084 * 0.02562 * 11 9 8 13 13 C 1.53161 * 108.44383 * 125.44305 * 12 11 9 14 14 C 1.52507 * 109.80108 * 54.51348 * 13 12 11 15 15 H 1.08995 * 108.93603 * 180.33994 * 14 13 12 16 16 O 1.42693 * 110.62397 * 61.30467 * 14 13 12 17 17 C 1.43073 * 113.86656 * 174.64123 * 16 14 13 18 18 C 1.52804 * 109.52095 * 61.51425 * 17 16 14 19 19 N 1.47167 * 108.92704 * 308.65695 * 18 17 16 20 20 C 1.36938 * 121.22522 * 230.90860 * 19 18 17 21 21 H 1.07998 * 120.00074 * 149.42602 * 20 19 18 22 22 C 1.38812 * 119.99938 * 329.42021 * 20 19 18 23 23 N 1.31620 * 120.00039 * 142.81861 * 22 20 19 24 24 Si 1.86802 * 120.00050 * 322.82565 * 22 20 19 25 25 H 1.48502 * 109.46679 * 275.21256 * 24 22 20 26 26 H 1.48501 * 109.47249 * 35.20977 * 24 22 20 27 27 H 1.48491 * 109.47256 * 155.21545 * 24 22 20 28 28 C 1.47593 * 117.55062 * 50.63078 * 19 18 17 29 29 H 1.09009 * 110.31616 * 186.93205 * 28 19 18 30 30 C 1.46796 * 120.72128 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.47374 * 270.14869 * 1 2 3 32 32 H 1.09006 * 109.46785 * 30.14553 * 1 2 3 33 33 H 1.08999 * 109.47741 * 150.14102 * 1 2 3 34 34 H 1.09009 * 109.46814 * 269.97336 * 7 6 4 35 35 H 1.08995 * 109.47462 * 29.97138 * 7 6 4 36 36 H 1.08999 * 109.47056 * 149.97874 * 7 6 4 37 37 H 1.09003 * 109.64364 * 245.12395 * 12 11 9 38 38 H 1.08996 * 109.64558 * 5.75514 * 12 11 9 39 39 H 1.09002 * 109.41599 * 174.62261 * 13 12 11 40 40 H 1.09010 * 109.41320 * 294.41307 * 13 12 11 41 41 H 1.09006 * 109.47594 * 181.63937 * 17 16 14 42 42 H 1.08998 * 109.47826 * 301.65239 * 17 16 14 43 43 H 1.08998 * 109.53494 * 188.79331 * 18 17 16 44 44 H 1.09003 * 109.44068 * 68.46056 * 18 17 16 45 45 H 0.96998 * 119.99935 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.52619 * 114.41191 * 30 11 9 47 47 H 1.09001 * 109.57172 * 354.25254 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6441 -0.0061 5 1 4.3843 1.2299 -0.0105 6 6 3.6439 -0.6982 -0.0043 7 6 4.8799 -1.5603 -0.0086 8 6 2.3372 -1.1433 0.0035 9 6 1.8914 -2.5486 0.0074 10 8 1.7133 -3.1270 1.0622 11 7 1.6812 -3.1922 -1.1579 12 6 1.8919 -2.5086 -2.4418 13 6 2.8648 -3.3425 -3.2808 14 6 2.3440 -4.7701 -3.4089 15 1 3.0491 -5.3519 -4.0026 16 8 1.0791 -4.7863 -4.0691 17 6 0.5816 -6.1012 -4.3350 18 6 0.3786 -6.8465 -3.0165 19 7 1.6141 -6.7563 -2.2220 20 6 2.1976 -7.8739 -1.6876 21 1 3.2687 -7.9128 -1.5547 22 6 1.4124 -8.9568 -1.3165 23 7 1.8522 -10.1832 -1.5031 24 14 -0.2685 -8.6734 -0.5525 25 1 -0.1179 -8.4578 0.9090 26 1 -0.8963 -7.4763 -1.1674 27 1 -1.1275 -9.8608 -0.7917 28 6 2.2046 -5.4176 -2.0277 29 1 3.1721 -5.4990 -1.5322 30 6 1.2367 -4.5912 -1.1724 31 1 -0.3634 0.0027 1.0277 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3634 -0.8912 -0.5116 34 1 5.1729 -1.7700 -1.0374 35 1 5.6895 -1.0373 0.5003 36 1 4.6712 -2.4972 0.5078 37 1 0.9417 -2.4155 -2.9677 38 1 2.3149 -1.5197 -2.2653 39 1 2.9587 -2.9005 -4.2727 40 1 3.8416 -3.3551 -2.7970 41 1 -0.3689 -6.0301 -4.8638 42 1 1.2997 -6.6441 -4.9495 43 1 0.1507 -7.8926 -3.2206 44 1 -0.4444 -6.3913 -2.4655 45 1 1.3034 -10.9399 -1.2441 46 1 0.2342 -4.6506 -1.5961 47 1 1.2257 -4.9814 -0.1547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074359301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:55 Heat of formation + Delta-G solvation = 5.204713 kcal Electronic energy + Delta-G solvation = -30939.159241 eV Core-core repulsion = 26930.649862 eV Total energy + Delta-G solvation = -4008.509379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.58194 -41.29753 -39.80631 -37.12909 -36.50197 -34.54464 -33.86299 -33.28350 -32.56717 -31.27023 -29.62561 -29.06035 -28.24833 -26.29175 -25.55485 -24.62401 -23.21623 -22.76284 -21.18206 -20.57380 -19.62489 -18.97956 -18.65305 -17.80276 -17.25845 -17.09281 -16.85777 -16.47494 -16.16412 -16.04879 -15.72500 -15.51253 -14.94376 -14.77148 -14.69690 -14.44732 -14.24299 -14.18984 -14.00874 -13.85938 -13.71252 -13.41214 -13.33757 -13.32016 -12.97981 -12.87343 -12.69611 -12.54020 -12.34585 -11.97977 -11.93062 -11.85360 -11.49074 -11.20366 -11.00213 -10.93947 -10.37629 -10.34828 -9.73319 -9.61912 -8.85396 -8.30788 -5.48547 0.67526 1.31036 1.34489 1.43077 1.48570 1.53173 1.72801 2.12413 2.39947 2.80503 2.92401 3.27280 3.45389 3.57400 3.77282 3.96964 4.00085 4.04210 4.13045 4.16650 4.26881 4.34228 4.38972 4.42526 4.49786 4.59018 4.63919 4.67953 4.72471 4.74754 4.81832 4.86454 4.88476 4.91999 4.98670 4.99390 5.04671 5.07770 5.19417 5.28184 5.41619 5.50966 5.80810 6.07572 6.27437 6.30126 6.45581 6.56771 6.83795 7.17269 7.54582 8.00445 8.87316 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.003925 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.413818 B = 7131.190232 C = 7462.761179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.110 3.890 3 N -0.310 5.310 4 N -0.446 5.446 5 H 0.458 0.542 6 C 0.148 3.852 7 C -0.101 4.101 8 C -0.305 4.305 9 C 0.598 3.402 10 O -0.590 6.590 11 N -0.592 5.592 12 C 0.120 3.880 13 C -0.113 4.113 14 C 0.087 3.913 15 H 0.051 0.949 16 O -0.379 6.379 17 C 0.056 3.944 18 C 0.102 3.898 19 N -0.605 5.605 20 C -0.265 4.265 21 H 0.050 0.950 22 C 0.005 3.995 23 N -0.920 5.920 24 Si 0.885 3.115 25 H -0.305 1.305 26 H -0.234 1.234 27 H -0.295 1.295 28 C 0.133 3.867 29 H 0.070 0.930 30 C 0.115 3.885 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.035 0.965 45 H 0.264 0.736 46 H 0.061 0.939 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 23.879 -5.354 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.057 4.057 3 N -0.134 5.134 4 N -0.155 5.155 5 H 0.306 0.694 6 C 0.014 3.986 7 C -0.160 4.160 8 C -0.320 4.320 9 C 0.386 3.614 10 O -0.470 6.470 11 N -0.323 5.323 12 C -0.002 4.002 13 C -0.152 4.152 14 C 0.028 3.972 15 H 0.069 0.931 16 O -0.297 6.297 17 C -0.022 4.022 18 C -0.023 4.023 19 N -0.329 5.329 20 C -0.394 4.394 21 H 0.068 0.932 22 C -0.195 4.195 23 N -0.562 5.562 24 Si 0.712 3.288 25 H -0.233 1.233 26 H -0.158 1.158 27 H -0.222 1.222 28 C 0.026 3.974 29 H 0.088 0.912 30 C -0.010 4.010 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.137 0.863 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.285 24.821 -4.872 25.507 hybrid contribution -0.424 -1.869 1.232 2.278 sum 2.861 22.952 -3.639 23.414 Atomic orbital electron populations 1.20311 0.85384 1.04237 1.03789 1.22538 0.97723 0.88564 0.96921 1.77029 0.87133 1.22050 1.27148 1.45938 1.07484 1.04550 1.57492 0.69376 1.21639 0.96022 0.85444 0.95494 1.20731 0.91726 0.97816 1.05689 1.19718 0.93757 0.92784 1.25718 1.17755 0.75713 0.85321 0.82631 1.90762 1.54121 1.69270 1.32883 1.48168 1.65549 1.11868 1.06728 1.21769 1.00484 0.95967 0.81982 1.21841 0.99028 0.91896 1.02401 1.22220 0.85706 0.97597 0.91673 0.93065 1.87765 1.36447 1.27449 1.78076 1.22985 1.00178 0.83400 0.95630 1.22004 0.88349 0.99531 0.92424 1.44635 1.28445 1.01949 1.57844 1.18579 0.91130 0.91687 1.38006 0.93234 1.25693 1.00153 0.94457 0.99173 1.70160 1.40867 0.98807 1.46360 0.86827 0.83268 0.78738 0.79952 1.23315 1.15800 1.22157 1.21818 0.96006 0.84341 0.95237 0.91207 1.21876 0.98524 0.80444 1.00173 0.90040 0.88408 0.90890 0.86987 0.87347 0.91364 0.90448 0.88151 0.87225 0.88812 0.86344 0.93408 0.92392 0.94751 0.92638 0.92059 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.28 71.23 0.73 -0.83 16 2 C 0.11 2.58 7.26 43.52 0.32 2.90 16 3 N -0.31 -6.70 12.63 -46.67 -0.59 -7.29 16 4 N -0.45 -6.94 7.29 -46.79 -0.34 -7.28 16 5 H 0.46 3.47 8.96 -213.43 -1.91 1.56 16 6 C 0.15 2.74 7.20 42.14 0.30 3.04 16 7 C -0.10 -1.32 10.25 71.23 0.73 -0.59 16 8 C -0.30 -7.77 3.87 -20.15 -0.08 -7.85 16 9 C 0.60 19.57 6.86 86.67 0.59 20.16 16 10 O -0.59 -25.32 16.52 -4.03 -0.07 -25.39 16 11 N -0.59 -17.83 2.96 -822.75 -2.44 -20.26 16 12 C 0.12 2.60 6.17 86.34 0.53 3.14 16 13 C -0.11 -2.31 5.82 30.48 0.18 -2.14 16 14 C 0.09 2.60 2.73 30.49 0.08 2.69 16 15 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16 16 O -0.38 -11.56 9.59 -148.98 -1.43 -12.99 16 17 C 0.06 1.78 6.96 71.92 0.50 2.28 16 18 C 0.10 4.15 4.08 86.19 0.35 4.50 16 19 N -0.60 -27.74 2.38 -673.14 -1.60 -29.34 16 20 C -0.27 -14.73 9.88 84.03 0.83 -13.90 16 21 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 22 C 0.00 0.26 4.79 84.86 0.41 0.67 16 23 N -0.92 -56.04 13.97 21.65 0.30 -55.74 16 24 Si 0.88 44.68 26.99 68.60 1.85 46.53 16 25 H -0.30 -16.22 7.11 99.48 0.71 -15.51 16 26 H -0.23 -10.86 4.81 99.48 0.48 -10.38 16 27 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 28 C 0.13 5.07 3.03 44.96 0.14 5.21 16 29 H 0.07 2.82 7.99 -2.38 -0.02 2.80 16 30 C 0.11 4.33 5.62 86.44 0.49 4.82 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.07 1.52 8.01 -2.39 -0.02 1.50 16 34 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 1.30 7.96 -2.39 -0.02 1.28 16 37 H 0.08 1.70 7.95 -2.39 -0.02 1.69 16 38 H 0.10 1.83 6.27 -2.39 -0.01 1.82 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.12 3.01 8.14 -2.38 -0.02 2.99 16 42 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 43 H 0.06 2.57 6.39 -2.39 -0.02 2.55 16 44 H 0.03 1.42 5.56 -2.39 -0.01 1.41 16 45 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.06 2.37 6.58 -2.39 -0.02 2.36 16 47 H 0.05 2.34 7.00 -2.39 -0.02 2.33 16 Total: -1.00 -77.19 368.42 0.65 -76.54 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -1.14 Total: 11.10 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 6.10 Total: 24.11 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -4.66 Total: -119.91 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.50 Total: -38.37 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.85 Total: 46.53 kcal Total: -77.19 0.65 -76.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074359301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.746 kcal (2) G-P(sol) polarization free energy of solvation -77.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds