Wall clock time and date at job start Tue Mar 31 2020 18:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30449 * 125.98456 * 2 1 4 4 N 1.39939 * 108.89129 * 180.02562 * 3 2 1 5 5 H 0.96997 * 125.75063 * 179.97438 * 4 3 2 6 6 C 1.34260 * 108.49423 * 359.75541 * 4 3 2 7 7 C 1.50700 * 126.29267 * 180.24463 * 6 4 3 8 8 C 1.38043 * 107.41493 * 0.38940 * 6 4 3 9 9 C 1.47426 * 126.41233 * 179.87156 * 8 6 4 10 10 O 1.21606 * 120.00497 * 269.71724 * 9 8 6 11 11 N 1.34781 * 120.00189 * 89.71417 * 9 8 6 12 12 C 1.46839 * 120.40244 * 0.02562 * 11 9 8 13 13 C 1.53366 * 109.25040 * 232.21156 * 12 11 9 14 14 C 1.52784 * 108.81456 * 306.17203 * 13 12 11 15 15 H 1.08997 * 109.34439 * 303.34156 * 14 13 12 16 16 O 1.42597 * 111.11900 * 182.55201 * 14 13 12 17 17 C 1.43151 * 113.63378 * 176.39670 * 16 14 13 18 18 C 1.53200 * 109.73728 * 61.69343 * 17 16 14 19 19 N 1.47349 * 108.79599 * 308.77410 * 18 17 16 20 20 C 1.36939 * 121.30575 * 230.22537 * 19 18 17 21 21 H 1.07994 * 120.00033 * 152.88156 * 20 19 18 22 22 C 1.38812 * 119.99581 * 332.87910 * 20 19 18 23 23 N 1.31622 * 120.00296 * 344.29577 * 22 20 19 24 24 Si 1.86798 * 119.99794 * 164.30115 * 22 20 19 25 25 H 1.48500 * 109.47411 * 94.42343 * 24 22 20 26 26 H 1.48500 * 109.46962 * 214.42419 * 24 22 20 27 27 H 1.48501 * 109.47276 * 334.42266 * 24 22 20 28 28 C 1.46875 * 117.39593 * 50.25084 * 19 18 17 29 29 H 1.09001 * 110.21322 * 67.97984 * 28 19 18 30 30 C 1.47121 * 120.41093 * 179.97438 * 11 9 8 31 31 H 1.09003 * 109.47057 * 269.95675 * 1 2 3 32 32 H 1.08995 * 109.47044 * 29.95883 * 1 2 3 33 33 H 1.08998 * 109.46903 * 149.95537 * 1 2 3 34 34 H 1.09002 * 109.46613 * 270.18060 * 7 6 4 35 35 H 1.08999 * 109.47154 * 30.17446 * 7 6 4 36 36 H 1.08996 * 109.47543 * 150.17757 * 7 6 4 37 37 H 1.08996 * 109.50827 * 112.28103 * 12 11 9 38 38 H 1.08999 * 109.54389 * 352.16920 * 12 11 9 39 39 H 1.09001 * 109.58122 * 186.37393 * 13 12 11 40 40 H 1.09000 * 109.69178 * 66.03944 * 13 12 11 41 41 H 1.09000 * 109.42118 * 181.77120 * 17 16 14 42 42 H 1.08996 * 109.42540 * 301.60739 * 17 16 14 43 43 H 1.08998 * 109.57986 * 188.98430 * 18 17 16 44 44 H 1.08994 * 109.58763 * 68.57492 * 18 17 16 45 45 H 0.96999 * 119.99982 * 179.97438 * 23 22 20 46 46 H 1.08995 * 109.73243 * 246.46685 * 30 11 9 47 47 H 1.09008 * 109.72770 * 7.14438 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2301 -0.0011 6 6 3.6439 -0.6979 0.0045 7 6 4.8800 -1.5600 0.0110 8 6 2.3373 -1.1432 -0.0007 9 6 1.8916 -2.5485 -0.0005 10 8 1.7075 -3.1282 -1.0535 11 7 1.6883 -3.1909 1.1668 12 6 1.9073 -2.4994 2.4435 13 6 2.8407 -3.3422 3.3214 14 6 2.2630 -4.7513 3.4437 15 1 1.2510 -4.6931 3.8443 16 8 3.0641 -5.5624 4.3003 17 6 2.5270 -6.8713 4.5184 18 6 2.4423 -7.6243 3.1870 19 7 1.7423 -6.7767 2.2058 20 6 0.6958 -7.2598 1.4665 21 1 -0.0651 -6.5853 1.1025 22 6 0.6130 -8.6166 1.1849 23 7 1.6667 -9.3882 1.3483 24 14 -0.9939 -9.3472 0.5738 25 1 -0.9862 -9.3885 -0.9106 26 1 -1.1453 -10.7251 1.1065 27 1 -2.1277 -8.5090 1.0397 28 6 2.2112 -5.3934 2.0514 29 1 3.2053 -5.3804 1.6044 30 6 1.2430 -4.5931 1.1775 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3633 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 5.1826 -1.7689 -1.0152 35 1 5.6849 -1.0372 0.5277 36 1 4.6668 -2.4972 0.5249 37 1 0.9531 -2.3639 2.9525 38 1 2.3623 -1.5264 2.2579 39 1 2.9172 -2.8916 4.3109 40 1 3.8294 -3.3910 2.8649 41 1 3.1737 -7.4188 5.2041 42 1 1.5302 -6.7866 4.9511 43 1 1.8898 -8.5533 3.3272 44 1 3.4473 -7.8454 2.8276 45 1 1.6087 -10.3363 1.1518 46 1 0.2362 -4.6563 1.5902 47 1 1.2505 -4.9892 0.1620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074359303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:05 Heat of formation + Delta-G solvation = 22.587526 kcal Electronic energy + Delta-G solvation = -30694.560046 eV Core-core repulsion = 26686.804442 eV Total energy + Delta-G solvation = -4007.755603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.64235 -39.78274 -38.32543 -35.95531 -34.70199 -33.69983 -32.21763 -31.40235 -31.32066 -29.84959 -28.39506 -27.55468 -26.92553 -25.17444 -23.89564 -22.65636 -21.83463 -20.86103 -20.24473 -19.66030 -18.70011 -17.69762 -16.83149 -16.64909 -15.63869 -15.47921 -15.27556 -14.99592 -14.91874 -14.47794 -14.08633 -13.94196 -13.70450 -13.53709 -13.45734 -13.25476 -13.04630 -12.84740 -12.62508 -12.61603 -12.55741 -12.37251 -12.14645 -11.83789 -11.33477 -11.01112 -10.95305 -10.94252 -10.80280 -10.59974 -10.25563 -10.22989 -9.97705 -9.69266 -9.61165 -9.52515 -8.99183 -8.66428 -8.53146 -8.31349 -6.73468 -5.83873 -3.28725 1.53885 2.31375 2.52381 2.79067 3.31479 3.36612 3.43971 3.45316 4.24837 4.31850 4.43580 4.46369 4.75584 4.92927 4.96975 5.12284 5.21723 5.25082 5.31245 5.39744 5.43111 5.47122 5.58277 5.59809 5.62495 5.73718 5.74910 5.76455 5.80194 5.92814 5.96067 6.10557 6.15406 6.25023 6.32433 6.33330 6.46563 6.66598 6.74672 6.88263 6.97576 7.12823 7.42432 7.49682 7.66083 7.72537 7.88795 8.32227 8.44769 9.10102 9.73706 10.31055 11.24309 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.003898 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.552470 B = 7180.669199 C = 8147.197965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.116 3.884 3 N -0.297 5.297 4 N -0.465 5.465 5 H 0.440 0.560 6 C 0.130 3.870 7 C -0.101 4.101 8 C -0.273 4.273 9 C 0.595 3.405 10 O -0.532 6.532 11 N -0.602 5.602 12 C 0.117 3.883 13 C -0.123 4.123 14 C 0.077 3.923 15 H 0.052 0.948 16 O -0.390 6.390 17 C 0.039 3.961 18 C 0.143 3.857 19 N -0.587 5.587 20 C -0.258 4.258 21 H 0.073 0.927 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.278 1.278 28 C 0.138 3.862 29 H 0.036 0.964 30 C 0.123 3.877 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.095 0.905 44 H 0.028 0.972 45 H 0.255 0.745 46 H 0.073 0.927 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 18.022 3.454 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 N -0.120 5.120 4 N -0.171 5.171 5 H 0.285 0.715 6 C -0.002 4.002 7 C -0.159 4.159 8 C -0.288 4.288 9 C 0.381 3.619 10 O -0.407 6.407 11 N -0.336 5.336 12 C -0.007 4.007 13 C -0.161 4.161 14 C 0.017 3.983 15 H 0.070 0.930 16 O -0.309 6.309 17 C -0.039 4.039 18 C 0.017 3.983 19 N -0.312 5.312 20 C -0.387 4.387 21 H 0.090 0.910 22 C -0.192 4.192 23 N -0.545 5.545 24 Si 0.732 3.268 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.203 1.203 28 C 0.030 3.970 29 H 0.053 0.947 30 C 0.001 3.999 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.050 18.822 2.917 19.472 hybrid contribution -0.427 -1.187 -0.350 1.309 sum 3.624 17.635 2.567 18.186 Atomic orbital electron populations 1.20280 0.86111 1.03942 1.03450 1.22321 0.96950 0.88820 0.97012 1.77066 0.86167 1.22149 1.26654 1.45941 1.07535 1.04688 1.58982 0.71542 1.21383 0.96226 0.84906 0.97669 1.20602 0.92042 0.98926 1.04348 1.19893 0.92120 0.94497 1.22281 1.17326 0.76827 0.84375 0.83401 1.90804 1.51296 1.67601 1.31040 1.48223 1.66636 1.13351 1.05343 1.21602 0.99485 0.95597 0.83991 1.21841 0.99707 0.94531 1.00050 1.22429 0.93728 0.89756 0.92393 0.92968 1.87734 1.49878 1.25671 1.67602 1.23332 0.97480 0.83440 0.99600 1.21432 0.96769 0.94515 0.85549 1.44029 1.37363 1.06500 1.43282 1.19142 0.99075 0.91967 1.28509 0.90970 1.25055 0.97144 0.97661 0.99346 1.70022 1.27190 1.05278 1.52032 0.86280 0.83370 0.78469 0.78692 1.21252 1.21541 1.20298 1.21291 0.96054 0.87086 0.92552 0.94673 1.21800 0.97352 0.77512 1.03186 0.89967 0.90396 0.89990 0.89266 0.90374 0.88988 0.91362 0.89761 0.90432 0.91021 0.90123 0.94118 0.88693 0.95436 0.93525 0.90873 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.28 36.01 0.37 -0.45 16 2 C 0.12 1.47 7.26 -82.02 -0.60 0.88 16 3 N -0.30 -3.62 12.63 33.90 0.43 -3.19 16 4 N -0.46 -4.49 7.29 33.86 0.25 -4.24 16 5 H 0.44 2.63 8.96 -182.72 -1.64 1.00 16 6 C 0.13 1.43 7.14 -81.60 -0.58 0.85 16 7 C -0.10 -0.88 10.25 36.01 0.37 -0.51 16 8 C -0.27 -3.74 3.86 -105.07 -0.41 -4.14 16 9 C 0.59 9.90 6.85 -12.52 -0.09 9.81 16 10 O -0.53 -11.08 16.51 5.27 0.09 -10.99 16 11 N -0.60 -9.48 2.98 -173.94 -0.52 -10.00 16 12 C 0.12 1.45 6.31 -3.67 -0.02 1.43 16 13 C -0.12 -1.65 5.82 -26.65 -0.16 -1.81 16 14 C 0.08 1.35 2.48 -26.63 -0.07 1.29 16 15 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 16 O -0.39 -7.49 10.49 -35.23 -0.37 -7.86 16 17 C 0.04 0.76 6.96 37.26 0.26 1.02 16 18 C 0.14 3.35 5.43 -3.47 -0.02 3.33 16 19 N -0.59 -14.33 3.04 -164.33 -0.50 -14.83 16 20 C -0.26 -6.80 8.88 -15.06 -0.13 -6.94 16 21 H 0.07 1.85 6.27 -52.49 -0.33 1.53 16 22 C 0.01 0.19 4.98 -17.43 -0.09 0.10 16 23 N -0.90 -25.60 11.16 55.49 0.62 -24.98 16 24 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C 0.14 2.86 3.03 -67.50 -0.20 2.66 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 C 0.12 2.36 4.48 -3.69 -0.02 2.35 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.95 7.96 -51.93 -0.41 0.54 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.94 6.20 -51.93 -0.32 0.62 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 2.43 6.21 -51.93 -0.32 2.10 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.07 1.40 7.38 -51.93 -0.38 1.02 16 47 H 0.10 2.30 6.79 -51.92 -0.35 1.95 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -33.33 372.81 -9.18 -42.51 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.38 Total: 1.75 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -1.38 Total: 9.87 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.28 Total: -57.24 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.28 Total: -18.85 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.33 -9.18 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074359303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.100 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds