Wall clock time and date at job start Tue Mar 31 2020 18:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30449 * 125.98456 * 2 1 4 4 N 1.39939 * 108.89129 * 180.02562 * 3 2 1 5 5 H 0.96997 * 125.75063 * 179.97438 * 4 3 2 6 6 C 1.34260 * 108.49423 * 359.75541 * 4 3 2 7 7 C 1.50700 * 126.29267 * 180.24463 * 6 4 3 8 8 C 1.38043 * 107.41493 * 0.38940 * 6 4 3 9 9 C 1.47426 * 126.41233 * 179.87156 * 8 6 4 10 10 O 1.21606 * 120.00497 * 269.71724 * 9 8 6 11 11 N 1.34781 * 120.00189 * 89.71417 * 9 8 6 12 12 C 1.46839 * 120.40244 * 0.02562 * 11 9 8 13 13 C 1.53366 * 109.25040 * 232.21156 * 12 11 9 14 14 C 1.52784 * 108.81456 * 306.17203 * 13 12 11 15 15 H 1.08997 * 109.34439 * 303.34156 * 14 13 12 16 16 O 1.42597 * 111.11900 * 182.55201 * 14 13 12 17 17 C 1.43151 * 113.63378 * 176.39670 * 16 14 13 18 18 C 1.53200 * 109.73728 * 61.69343 * 17 16 14 19 19 N 1.47349 * 108.79599 * 308.77410 * 18 17 16 20 20 C 1.36939 * 121.30575 * 230.22537 * 19 18 17 21 21 H 1.07994 * 120.00033 * 152.88156 * 20 19 18 22 22 C 1.38812 * 119.99581 * 332.87910 * 20 19 18 23 23 N 1.31622 * 120.00296 * 344.29577 * 22 20 19 24 24 Si 1.86798 * 119.99794 * 164.30115 * 22 20 19 25 25 H 1.48500 * 109.47411 * 94.42343 * 24 22 20 26 26 H 1.48500 * 109.46962 * 214.42419 * 24 22 20 27 27 H 1.48501 * 109.47276 * 334.42266 * 24 22 20 28 28 C 1.46875 * 117.39593 * 50.25084 * 19 18 17 29 29 H 1.09001 * 110.21322 * 67.97984 * 28 19 18 30 30 C 1.47121 * 120.41093 * 179.97438 * 11 9 8 31 31 H 1.09003 * 109.47057 * 269.95675 * 1 2 3 32 32 H 1.08995 * 109.47044 * 29.95883 * 1 2 3 33 33 H 1.08998 * 109.46903 * 149.95537 * 1 2 3 34 34 H 1.09002 * 109.46613 * 270.18060 * 7 6 4 35 35 H 1.08999 * 109.47154 * 30.17446 * 7 6 4 36 36 H 1.08996 * 109.47543 * 150.17757 * 7 6 4 37 37 H 1.08996 * 109.50827 * 112.28103 * 12 11 9 38 38 H 1.08999 * 109.54389 * 352.16920 * 12 11 9 39 39 H 1.09001 * 109.58122 * 186.37393 * 13 12 11 40 40 H 1.09000 * 109.69178 * 66.03944 * 13 12 11 41 41 H 1.09000 * 109.42118 * 181.77120 * 17 16 14 42 42 H 1.08996 * 109.42540 * 301.60739 * 17 16 14 43 43 H 1.08998 * 109.57986 * 188.98430 * 18 17 16 44 44 H 1.08994 * 109.58763 * 68.57492 * 18 17 16 45 45 H 0.96999 * 119.99982 * 179.97438 * 23 22 20 46 46 H 1.08995 * 109.73243 * 246.46685 * 30 11 9 47 47 H 1.09008 * 109.72770 * 7.14438 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2301 -0.0011 6 6 3.6439 -0.6979 0.0045 7 6 4.8800 -1.5600 0.0110 8 6 2.3373 -1.1432 -0.0007 9 6 1.8916 -2.5485 -0.0005 10 8 1.7075 -3.1282 -1.0535 11 7 1.6883 -3.1909 1.1668 12 6 1.9073 -2.4994 2.4435 13 6 2.8407 -3.3422 3.3214 14 6 2.2630 -4.7513 3.4437 15 1 1.2510 -4.6931 3.8443 16 8 3.0641 -5.5624 4.3003 17 6 2.5270 -6.8713 4.5184 18 6 2.4423 -7.6243 3.1870 19 7 1.7423 -6.7767 2.2058 20 6 0.6958 -7.2598 1.4665 21 1 -0.0651 -6.5853 1.1025 22 6 0.6130 -8.6166 1.1849 23 7 1.6667 -9.3882 1.3483 24 14 -0.9939 -9.3472 0.5738 25 1 -0.9862 -9.3885 -0.9106 26 1 -1.1453 -10.7251 1.1065 27 1 -2.1277 -8.5090 1.0397 28 6 2.2112 -5.3934 2.0514 29 1 3.2053 -5.3804 1.6044 30 6 1.2430 -4.5931 1.1775 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3633 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 5.1826 -1.7689 -1.0152 35 1 5.6849 -1.0372 0.5277 36 1 4.6668 -2.4972 0.5249 37 1 0.9531 -2.3639 2.9525 38 1 2.3623 -1.5264 2.2579 39 1 2.9172 -2.8916 4.3109 40 1 3.8294 -3.3910 2.8649 41 1 3.1737 -7.4188 5.2041 42 1 1.5302 -6.7866 4.9511 43 1 1.8898 -8.5533 3.3272 44 1 3.4473 -7.8454 2.8276 45 1 1.6087 -10.3363 1.1518 46 1 0.2362 -4.6563 1.5902 47 1 1.2505 -4.9892 0.1620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074359303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:04 Heat of formation + Delta-G solvation = -1.109946 kcal Electronic energy + Delta-G solvation = -30695.587645 eV Core-core repulsion = 26686.804442 eV Total energy + Delta-G solvation = -4008.783203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.59514 -41.18202 -39.80357 -37.37560 -36.51714 -34.54643 -33.63194 -33.04306 -32.49284 -31.36191 -29.40428 -28.81197 -28.23095 -26.67891 -25.46499 -24.08011 -23.24166 -22.21954 -21.37852 -21.08024 -19.85570 -18.79815 -18.60021 -17.90863 -17.10555 -16.99210 -16.72655 -16.34255 -16.12296 -16.03952 -15.52118 -15.43277 -14.97026 -14.80335 -14.66745 -14.57132 -14.25880 -14.18303 -13.92447 -13.70303 -13.40477 -13.33766 -13.31099 -13.02105 -12.93850 -12.81063 -12.68133 -12.39664 -12.31839 -12.04591 -11.90421 -11.88458 -11.70704 -11.24049 -11.01564 -10.74161 -10.50012 -10.37441 -9.71874 -9.62134 -8.72528 -7.90167 -5.37936 0.65616 1.33562 1.45624 1.47464 1.50701 1.56509 1.71278 2.07341 2.48636 2.83365 3.25483 3.43657 3.46753 3.55027 3.80304 3.94961 3.97531 4.04858 4.09869 4.21414 4.30069 4.32118 4.41884 4.50184 4.55123 4.57087 4.58679 4.67941 4.73088 4.74731 4.84538 4.87001 4.88611 4.97966 4.99628 5.04426 5.11602 5.15296 5.31510 5.42276 5.47456 5.56275 5.64316 6.26188 6.27180 6.35467 6.39515 6.56237 7.06395 7.14129 7.74224 8.29024 9.16083 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.003898 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.552470 B = 7180.669199 C = 8147.197965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.112 3.888 3 N -0.309 5.309 4 N -0.446 5.446 5 H 0.458 0.542 6 C 0.147 3.853 7 C -0.101 4.101 8 C -0.305 4.305 9 C 0.599 3.401 10 O -0.585 6.585 11 N -0.597 5.597 12 C 0.118 3.882 13 C -0.113 4.113 14 C 0.082 3.918 15 H 0.056 0.944 16 O -0.391 6.391 17 C 0.052 3.948 18 C 0.147 3.853 19 N -0.605 5.605 20 C -0.261 4.261 21 H 0.075 0.925 22 C -0.046 4.046 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.292 1.292 26 H -0.289 1.289 27 H -0.265 1.265 28 C 0.136 3.864 29 H 0.008 0.992 30 C 0.139 3.861 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.049 0.951 43 H 0.070 0.930 44 H -0.003 1.003 45 H 0.251 0.749 46 H 0.074 0.926 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 21.046 5.227 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 N -0.132 5.132 4 N -0.154 5.154 5 H 0.306 0.694 6 C 0.013 3.987 7 C -0.159 4.159 8 C -0.320 4.320 9 C 0.388 3.612 10 O -0.465 6.465 11 N -0.329 5.329 12 C -0.003 4.003 13 C -0.151 4.151 14 C 0.022 3.978 15 H 0.074 0.926 16 O -0.310 6.310 17 C -0.025 4.025 18 C 0.021 3.979 19 N -0.330 5.330 20 C -0.390 4.390 21 H 0.093 0.907 22 C -0.242 4.242 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.219 1.219 26 H -0.215 1.215 27 H -0.190 1.190 28 C 0.029 3.971 29 H 0.026 0.974 30 C 0.015 3.985 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.015 0.985 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.272 21.925 4.735 22.833 hybrid contribution -0.397 -2.075 -0.955 2.318 sum 3.875 19.850 3.780 20.575 Atomic orbital electron populations 1.20343 0.85100 1.03748 1.04620 1.22570 0.97833 0.88358 0.96741 1.77043 0.87014 1.22022 1.27116 1.45934 1.07575 1.04433 1.57462 0.69369 1.21583 0.95959 0.85517 0.95629 1.20697 0.92200 0.98169 1.04855 1.19700 0.93729 0.92771 1.25805 1.17757 0.75528 0.85377 0.82580 1.90771 1.53619 1.69127 1.32990 1.48232 1.65978 1.11855 1.06843 1.21853 1.00649 0.95800 0.82043 1.21849 0.99441 0.91773 1.02049 1.22491 0.94446 0.91355 0.89481 0.92597 1.87744 1.50339 1.25385 1.67513 1.23173 0.98847 0.83358 0.97168 1.21297 0.94410 0.94446 0.87702 1.44317 1.37160 1.08012 1.43492 1.19452 0.99603 0.92163 1.27791 0.90722 1.25783 0.99910 0.98172 1.00296 1.70172 1.28957 1.05135 1.53781 0.85324 0.80322 0.77679 0.77546 1.21881 1.21537 1.18959 1.21425 0.94702 0.85852 0.95156 0.97415 1.21335 0.97155 0.79549 1.00411 0.88086 0.89075 0.91650 0.88990 0.86531 0.90795 0.89284 0.87473 0.87088 0.91107 0.87333 0.93219 0.91208 0.98495 0.94023 0.90778 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.28 71.24 0.73 -0.79 16 2 C 0.11 2.63 7.26 43.52 0.32 2.94 16 3 N -0.31 -6.69 12.63 -46.67 -0.59 -7.28 16 4 N -0.45 -7.19 7.29 -46.80 -0.34 -7.53 16 5 H 0.46 3.76 8.96 -213.43 -1.91 1.84 16 6 C 0.15 2.88 7.14 42.14 0.30 3.19 16 7 C -0.10 -1.53 10.25 71.24 0.73 -0.80 16 8 C -0.31 -7.94 3.86 -20.15 -0.08 -8.02 16 9 C 0.60 20.11 6.85 86.66 0.59 20.71 16 10 O -0.59 -25.59 16.51 -4.05 -0.07 -25.65 16 11 N -0.60 -18.57 2.98 -822.48 -2.45 -21.02 16 12 C 0.12 2.60 6.31 86.44 0.55 3.15 16 13 C -0.11 -2.68 5.82 30.65 0.18 -2.50 16 14 C 0.08 2.75 2.48 30.66 0.08 2.82 16 15 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 16 O -0.39 -14.27 10.49 -148.98 -1.56 -15.83 16 17 C 0.05 1.96 6.96 72.05 0.50 2.46 16 18 C 0.15 7.11 5.43 86.28 0.47 7.58 16 19 N -0.60 -30.45 3.04 -673.81 -2.05 -32.50 16 20 C -0.26 -14.17 8.88 84.03 0.75 -13.42 16 21 H 0.08 3.95 6.27 -2.91 -0.02 3.93 16 22 C -0.05 -2.57 4.98 84.86 0.42 -2.14 16 23 N -0.93 -55.28 11.16 21.65 0.24 -55.03 16 24 Si 0.96 45.07 29.58 68.60 2.03 47.10 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 C 0.14 5.75 3.03 45.07 0.14 5.88 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 C 0.14 5.48 4.48 86.27 0.39 5.87 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.47 8.01 -2.39 -0.02 1.45 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.44 7.96 -2.39 -0.02 1.42 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.11 1.98 6.20 -2.39 -0.01 1.96 16 39 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 3.71 6.21 -2.39 -0.01 3.70 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.07 2.89 7.38 -2.39 -0.02 2.87 16 47 H 0.06 2.98 6.79 -2.38 -0.02 2.96 16 Total: -1.00 -76.50 372.81 0.35 -76.15 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.92 Total: 14.68 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: 6.06 Total: 26.92 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -5.19 Total: -123.36 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.63 Total: -41.48 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.50 0.35 -76.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074359303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.043 kcal (2) G-P(sol) polarization free energy of solvation -76.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds