Wall clock time and date at job start Tue Mar 31 2020 19:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34852 * 125.96732 * 2 1 4 4 N 1.36314 * 106.68937 * 179.97438 * 3 2 1 5 5 C 1.35420 * 107.39764 * 0.05584 * 4 3 2 6 6 N 1.30090 * 108.62971 * 359.93025 * 5 4 3 7 7 C 1.51043 * 123.98021 * 179.89035 * 5 4 3 8 8 C 1.53406 * 108.21320 * 344.05725 * 7 5 4 9 9 H 1.08998 * 109.54584 * 288.86307 * 8 7 5 10 10 C 1.50693 * 109.50936 * 168.74883 * 8 7 5 11 11 O 1.21284 * 119.99788 * 240.23802 * 10 8 7 12 12 N 1.34773 * 120.00444 * 60.23639 * 10 8 7 13 13 C 1.46504 * 120.00143 * 180.02562 * 12 10 8 14 14 H 1.08991 * 110.91743 * 31.10215 * 13 12 10 15 15 C 1.54913 * 111.00197 * 267.19516 * 13 12 10 16 16 N 1.47418 * 104.83149 * 204.91889 * 15 13 12 17 17 C 1.36942 * 125.65140 * 204.09485 * 16 15 13 18 18 H 1.08000 * 119.99414 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00341 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00171 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99713 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46833 * 60.00750 * 21 19 17 23 23 H 1.48505 * 109.46677 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47015 * 299.99918 * 21 19 17 25 25 C 1.47024 * 108.70466 * 24.12695 * 16 15 13 26 26 C 1.54316 * 107.26977 * 358.94505 * 25 16 15 27 27 H 1.09007 * 110.72364 * 96.34806 * 26 25 16 28 28 O 1.42903 * 110.71980 * 219.43757 * 26 25 16 29 29 C 1.53144 * 109.23456 * 48.82101 * 8 7 5 30 30 C 1.46466 * 127.77873 * 180.08548 * 4 3 2 31 31 H 1.08993 * 109.47550 * 89.99241 * 1 2 3 32 32 H 1.09000 * 109.47685 * 209.99811 * 1 2 3 33 33 H 1.09008 * 109.47109 * 329.99455 * 1 2 3 34 34 H 1.07996 * 126.65375 * 359.94643 * 3 2 1 35 35 H 1.09003 * 109.71512 * 224.38118 * 7 5 4 36 36 H 1.09002 * 109.71770 * 103.74025 * 7 5 4 37 37 H 0.97005 * 119.99782 * 359.97438 * 12 10 8 38 38 H 1.08998 * 110.36431 * 86.08137 * 15 13 12 39 39 H 1.08996 * 110.45844 * 323.80283 * 15 13 12 40 40 H 0.96996 * 120.00320 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.88420 * 239.52143 * 25 16 15 42 42 H 1.09010 * 110.00825 * 118.43191 * 25 16 15 43 43 H 0.96700 * 114.00311 * 298.54931 * 28 26 25 44 44 H 1.08997 * 109.47588 * 50.51784 * 29 8 7 45 45 H 1.08999 * 109.46381 * 170.51508 * 29 8 7 46 46 H 1.08996 * 109.58350 * 43.05361 * 30 4 3 47 47 H 1.09004 * 109.69865 * 282.71116 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0914 0.0000 4 7 3.5857 0.6414 0.0006 5 6 3.5413 -0.7121 -0.0003 6 7 2.2955 -1.0870 0.0001 7 6 4.7654 -1.5969 -0.0025 8 6 5.9743 -0.7420 -0.4036 9 1 5.9069 -0.4887 -1.4616 10 6 7.2432 -1.5146 -0.1510 11 8 8.0734 -1.0817 0.6199 12 7 7.4554 -2.6866 -0.7815 13 6 8.6888 -3.4380 -0.5354 14 1 9.0471 -3.2756 0.4810 15 6 9.7786 -3.0718 -1.5737 16 7 10.6649 -4.2487 -1.6216 17 6 11.9774 -4.2442 -2.0123 18 1 12.4460 -3.3210 -2.3200 19 6 12.7056 -5.4260 -2.0129 20 7 12.1345 -6.5511 -1.6384 21 14 14.4958 -5.4196 -2.5466 22 1 15.2739 -4.5193 -1.6582 23 1 15.0434 -6.7972 -2.4583 24 1 14.5928 -4.9377 -3.9478 25 6 9.9062 -5.4286 -1.1811 26 6 8.4848 -4.9499 -0.8183 27 1 7.8020 -5.0999 -1.6547 28 8 8.0072 -5.6226 0.3486 29 6 5.9829 0.5425 0.4304 30 6 4.8148 1.4379 0.0025 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5140 34 1 1.9764 2.1221 -0.0008 35 1 4.6329 -2.4062 -0.7206 36 1 4.9219 -2.0106 0.9938 37 1 6.7912 -3.0331 -1.3978 38 1 10.3333 -2.1922 -1.2471 39 1 9.3296 -2.8950 -2.5510 40 1 12.6432 -7.3769 -1.6392 41 1 10.3832 -5.8707 -0.3064 42 1 9.8563 -6.1618 -1.9862 43 1 7.9362 -6.5818 0.2483 44 1 5.8800 0.2910 1.4860 45 1 6.9227 1.0715 0.2728 46 1 4.7128 2.2655 0.7045 47 1 5.0012 1.8283 -0.9979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077228872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:31 Heat of formation + Delta-G solvation = -28.292423 kcal Electronic energy + Delta-G solvation = -28886.694837 eV Core-core repulsion = 24876.732914 eV Total energy + Delta-G solvation = -4009.961924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.31536 -41.22086 -39.57571 -37.32443 -36.66278 -35.62768 -34.41931 -33.51081 -32.43692 -30.45643 -29.79001 -28.84314 -28.01401 -26.37866 -25.05674 -24.01606 -22.40327 -21.94553 -21.60948 -21.04133 -20.08805 -19.11200 -18.39866 -17.95451 -17.77702 -17.35183 -16.84060 -16.47118 -16.30818 -15.80214 -15.58843 -15.14892 -15.02096 -14.85830 -14.80645 -14.55848 -14.46519 -14.19945 -13.82004 -13.77861 -13.49071 -13.16128 -13.12274 -13.11373 -12.85823 -12.73621 -12.69851 -12.57592 -12.26203 -12.13597 -12.12455 -11.89057 -11.53274 -11.12844 -10.90964 -10.79561 -10.76139 -10.45125 -10.17544 -9.10960 -8.97442 -7.89226 -5.26434 1.10017 1.45441 1.48881 1.52416 1.54970 1.86567 1.99981 2.09827 2.47489 3.12220 3.14614 3.31560 3.48304 3.49427 3.55708 3.59760 3.86846 3.97327 4.07537 4.07602 4.13637 4.21829 4.26708 4.36922 4.45553 4.49273 4.53436 4.54955 4.65819 4.75560 4.82336 4.87556 4.93611 5.01209 5.05950 5.08854 5.19109 5.36374 5.40527 5.43034 5.45330 5.65682 5.90759 6.13016 6.25402 6.49773 6.85264 7.03971 7.17755 7.19618 7.69072 8.31144 9.20316 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.002274 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.399159 B =12309.189585 C =12972.390630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.455 5.455 5 C 0.196 3.804 6 N -0.524 5.524 7 C -0.018 4.018 8 C -0.095 4.095 9 H 0.131 0.869 10 C 0.523 3.477 11 O -0.576 6.576 12 N -0.699 5.699 13 C 0.153 3.847 14 H 0.073 0.927 15 C 0.131 3.869 16 N -0.623 5.623 17 C -0.247 4.247 18 H 0.082 0.918 19 C -0.063 4.063 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.274 1.274 25 C 0.160 3.840 26 C 0.089 3.911 27 H 0.094 0.906 28 O -0.569 6.569 29 C -0.114 4.114 30 C 0.107 3.893 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.207 0.793 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.417 0.583 38 H 0.036 0.964 39 H 0.045 0.955 40 H 0.249 0.751 41 H 0.020 0.980 42 H 0.026 0.974 43 H 0.395 0.605 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.117 0.883 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.066 15.992 0.498 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.167 4.167 3 C -0.179 4.179 4 N -0.137 5.137 5 C -0.067 4.067 6 N -0.245 5.245 7 C -0.057 4.057 8 C -0.117 4.117 9 H 0.149 0.851 10 C 0.310 3.690 11 O -0.455 6.455 12 N -0.350 5.350 13 C 0.046 3.954 14 H 0.091 0.909 15 C 0.005 3.995 16 N -0.350 5.350 17 C -0.376 4.376 18 H 0.100 0.900 19 C -0.256 4.256 20 N -0.597 5.597 21 Si 0.809 3.191 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.200 1.200 25 C 0.034 3.966 26 C 0.029 3.971 27 H 0.112 0.888 28 O -0.377 6.377 29 C -0.152 4.152 30 C -0.014 4.014 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.224 0.776 35 H 0.130 0.870 36 H 0.102 0.898 37 H 0.254 0.746 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.038 0.962 42 H 0.044 0.956 43 H 0.246 0.754 44 H 0.085 0.915 45 H 0.122 0.878 46 H 0.135 0.865 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.480 16.063 1.260 26.851 hybrid contribution 1.368 -0.512 -0.536 1.556 sum -20.112 15.551 0.724 25.434 Atomic orbital electron populations 1.20041 0.86249 1.03043 1.02587 1.21371 0.97826 0.88509 1.09036 1.22834 0.82354 1.01447 1.11247 1.45584 1.07574 1.07046 1.53528 1.23173 0.94476 0.82636 1.06396 1.69892 1.00822 1.32170 1.21586 1.20076 0.85680 0.95620 1.04362 1.21375 0.90406 0.95601 1.04325 0.85141 1.20862 0.88190 0.80835 0.79130 1.90726 1.48175 1.69062 1.37502 1.45717 1.20806 1.21819 1.46683 1.21734 0.84900 0.89642 0.99077 0.90863 1.21947 0.90902 0.90258 0.96439 1.44512 1.08379 1.03961 1.78183 1.19404 0.86220 0.94724 1.37244 0.89973 1.25668 1.02695 0.95254 1.02022 1.70115 1.36722 0.98576 1.54299 0.85123 0.79315 0.76344 0.78364 1.20599 1.21848 1.19968 1.21639 0.88395 0.89195 0.97327 1.23191 0.94818 0.91051 0.88043 0.88838 1.86425 1.87855 1.25752 1.37665 1.21700 0.99178 0.94383 0.99968 1.22239 0.79850 0.93922 1.05413 0.90987 0.92409 0.89280 0.77592 0.86996 0.89786 0.74582 0.94594 0.93751 0.94155 0.96217 0.95626 0.75447 0.91457 0.87796 0.86537 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.42 71.23 0.74 -0.13 16 2 C -0.04 -0.79 7.10 41.40 0.29 -0.50 16 3 C -0.05 -0.70 11.55 83.22 0.96 0.26 16 4 N -0.45 -7.34 3.13 -513.83 -1.61 -8.95 16 5 C 0.20 4.15 7.65 138.24 1.06 5.21 16 6 N -0.52 -13.39 11.24 -175.69 -1.98 -15.36 16 7 C -0.02 -0.33 5.47 30.09 0.16 -0.16 16 8 C -0.10 -1.58 2.55 -11.36 -0.03 -1.61 16 9 H 0.13 1.56 8.12 -2.39 -0.02 1.54 16 10 C 0.52 13.37 7.13 87.66 0.62 13.99 16 11 O -0.58 -20.07 15.47 -3.04 -0.05 -20.12 16 12 N -0.70 -17.76 5.10 -435.97 -2.23 -19.99 16 13 C 0.15 5.45 3.15 46.38 0.15 5.60 16 14 H 0.07 3.14 7.54 -2.39 -0.02 3.12 16 15 C 0.13 5.38 6.93 86.86 0.60 5.98 16 16 N -0.62 -31.82 3.39 -692.00 -2.35 -34.17 16 17 C -0.25 -13.86 10.28 84.03 0.86 -13.00 16 18 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 19 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 20 N -0.95 -56.00 10.31 21.65 0.22 -55.78 16 21 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.16 7.62 5.14 86.73 0.45 8.07 16 26 C 0.09 3.11 3.97 31.78 0.13 3.23 16 27 H 0.09 2.66 8.01 -2.38 -0.02 2.64 16 28 O -0.57 -18.71 13.39 -148.98 -2.00 -20.71 16 29 C -0.11 -1.69 4.67 30.73 0.14 -1.55 16 30 C 0.11 1.04 6.98 86.48 0.60 1.65 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.11 1.72 7.95 -2.39 -0.02 1.71 16 36 H 0.08 1.72 8.11 -2.39 -0.02 1.70 16 37 H 0.42 7.67 8.29 -92.70 -0.77 6.90 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.02 1.08 7.30 -2.39 -0.02 1.06 16 42 H 0.03 1.32 7.50 -2.38 -0.02 1.30 16 43 H 0.40 9.88 9.11 -74.06 -0.67 9.21 16 44 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 45 H 0.10 1.57 7.79 -2.39 -0.02 1.55 16 46 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -80.28 380.43 -1.18 -81.47 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -0.44 Total: 22.14 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 7.21 Total: 23.95 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -7.94 Total: -134.25 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -2.04 Total: -40.83 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -80.28 -1.18 -81.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077228872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.173 kcal (2) G-P(sol) polarization free energy of solvation -80.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds