Wall clock time and date at job start Tue Mar 31 2020 19:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34849 * 125.96251 * 2 1 4 4 N 1.36317 * 106.68905 * 180.02562 * 3 2 1 5 5 C 1.35427 * 107.39661 * 359.95660 * 4 3 2 6 6 N 1.30088 * 108.62699 * 0.06029 * 5 4 3 7 7 C 1.51061 * 123.99571 * 180.18557 * 5 4 3 8 8 C 1.53393 * 108.19655 * 15.89198 * 7 5 4 9 9 H 1.09002 * 109.50884 * 71.17197 * 8 7 5 10 10 C 1.50699 * 109.51263 * 191.26868 * 8 7 5 11 11 O 1.21279 * 119.99809 * 119.90723 * 10 8 7 12 12 N 1.34769 * 120.00028 * 299.90681 * 10 8 7 13 13 C 1.46504 * 120.00102 * 180.02562 * 12 10 8 14 14 H 1.08999 * 110.88473 * 37.42313 * 13 12 10 15 15 C 1.54909 * 111.00183 * 273.54199 * 13 12 10 16 16 N 1.47420 * 104.83286 * 204.91324 * 15 13 12 17 17 C 1.36935 * 125.65055 * 204.09311 * 16 15 13 18 18 H 1.08000 * 119.99754 * 9.69473 * 17 16 15 19 19 C 1.38817 * 120.00145 * 189.69782 * 17 16 15 20 20 N 1.31620 * 119.99782 * 209.16550 * 19 17 16 21 21 Si 1.86799 * 119.99851 * 29.16455 * 19 17 16 22 22 H 1.48501 * 109.47117 * 275.35691 * 21 19 17 23 23 H 1.48498 * 109.47233 * 35.35494 * 21 19 17 24 24 H 1.48500 * 109.46874 * 155.35570 * 21 19 17 25 25 C 1.47027 * 108.70299 * 24.35760 * 16 15 13 26 26 C 1.54333 * 107.26095 * 358.58553 * 25 16 15 27 27 H 1.09002 * 110.51783 * 96.45535 * 26 25 16 28 28 O 1.42904 * 110.84609 * 219.67072 * 26 25 16 29 29 C 1.53149 * 109.27451 * 311.22361 * 8 7 5 30 30 C 1.46475 * 127.77859 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.47508 * 269.95836 * 1 2 3 32 32 H 1.09006 * 109.47338 * 29.95218 * 1 2 3 33 33 H 1.09001 * 109.47585 * 149.95431 * 1 2 3 34 34 H 1.08000 * 126.65748 * 0.04169 * 3 2 1 35 35 H 1.09000 * 109.68426 * 256.23820 * 7 5 4 36 36 H 1.09002 * 109.75967 * 135.58834 * 7 5 4 37 37 H 0.97007 * 120.00257 * 359.97438 * 12 10 8 38 38 H 1.09008 * 110.36572 * 86.07598 * 15 13 12 39 39 H 1.09005 * 110.36910 * 323.75777 * 15 13 12 40 40 H 0.96997 * 120.00085 * 4.89661 * 20 19 17 41 41 H 1.08999 * 109.87874 * 118.12441 * 25 16 15 42 42 H 1.08992 * 109.88366 * 239.29534 * 25 16 15 43 43 H 0.96702 * 114.00020 * 293.69064 * 28 26 25 44 44 H 1.09005 * 109.46563 * 189.46326 * 29 8 7 45 45 H 1.08996 * 109.46683 * 309.45206 * 29 8 7 46 46 H 1.09003 * 109.58038 * 77.28699 * 30 4 3 47 47 H 1.09001 * 109.69328 * 316.93968 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6415 -0.0006 5 6 3.5413 -0.7120 0.0001 6 7 2.2956 -1.0869 -0.0003 7 6 4.7654 -1.5972 0.0038 8 6 5.9738 -0.7420 0.4055 9 1 5.9050 -0.4890 1.4635 10 6 7.2430 -1.5145 0.1541 11 8 8.0750 -1.0805 -0.6142 12 7 7.4536 -2.6877 0.7831 13 6 8.6878 -3.4384 0.5392 14 1 9.5371 -2.7643 0.4276 15 6 8.5427 -4.3582 -0.6988 16 7 9.5203 -5.4401 -0.4819 17 6 10.0894 -6.2097 -1.4611 18 1 9.9539 -5.9485 -2.5002 19 6 10.8404 -7.3257 -1.1182 20 7 11.8209 -7.7248 -1.9002 21 14 10.4592 -8.2611 0.4532 22 1 11.1506 -7.6118 1.5959 23 1 8.9935 -8.2519 0.6916 24 1 10.9305 -9.6631 0.3214 25 6 9.7784 -5.5600 0.9606 26 6 8.9420 -4.4726 1.6675 27 1 8.0013 -4.8885 2.0285 28 8 9.6789 -3.8806 2.7392 29 6 5.9833 0.5428 -0.4280 30 6 4.8148 1.4382 -0.0013 31 1 -0.3634 -0.0007 1.0277 32 1 -0.3634 0.8904 -0.5131 33 1 -0.3634 -0.8896 -0.5145 34 1 1.9763 2.1222 0.0006 35 1 4.9224 -2.0108 -0.9924 36 1 4.6327 -2.4066 0.7218 37 1 6.7884 -3.0347 1.3980 38 1 8.7808 -3.8088 -1.6097 39 1 7.5327 -4.7648 -0.7531 40 1 12.0652 -7.1995 -2.6782 41 1 9.4774 -6.5476 1.3101 42 1 10.8375 -5.4000 1.1622 43 1 9.8641 -4.4857 3.4705 44 1 6.9230 1.0718 -0.2692 45 1 5.8818 0.2916 -1.4838 46 1 4.9990 1.8267 1.0003 47 1 4.7149 2.2671 -0.7021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077228873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:35 Heat of formation + Delta-G solvation = 4.033954 kcal Electronic energy + Delta-G solvation = -29045.413001 eV Core-core repulsion = 25036.852855 eV Total energy + Delta-G solvation = -4008.560147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.63595 -40.18996 -38.43610 -36.57736 -35.40874 -34.38223 -33.60479 -32.02346 -31.81068 -29.50965 -28.64950 -27.88230 -27.28451 -24.56734 -24.09489 -23.03474 -21.10968 -20.92602 -20.39970 -20.16695 -19.41307 -17.74035 -17.41331 -17.19673 -16.94032 -16.34041 -16.09878 -15.46755 -14.92943 -14.77874 -14.46720 -14.35844 -14.11816 -14.04567 -13.81170 -13.60952 -13.24481 -12.94617 -12.88203 -12.78840 -12.59359 -12.51770 -12.17995 -12.02451 -11.86451 -11.72571 -11.59026 -11.46875 -11.19150 -10.65459 -10.52220 -10.16752 -10.07475 -9.85789 -9.76724 -9.53463 -9.27336 -9.06917 -8.49139 -8.44446 -7.17475 -6.41450 -3.23596 1.76065 2.45900 2.50131 2.83488 2.97309 3.35419 3.46454 3.64471 3.85661 4.09409 4.18269 4.19241 4.22418 4.57670 4.61337 4.68595 4.71454 4.76511 4.79771 4.95692 5.00860 5.08679 5.11678 5.18477 5.26555 5.31463 5.36836 5.41705 5.46517 5.49153 5.63109 5.70755 5.76843 5.78062 5.78899 6.05718 6.18997 6.30054 6.46126 6.54184 6.54388 6.66306 6.89226 7.43667 7.60717 7.71929 7.88317 8.14641 8.28886 8.96272 9.50724 10.15274 11.07655 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002510 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.461988 B =11150.984633 C =11474.063945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.005 4.005 3 C -0.056 4.056 4 N -0.456 5.456 5 C 0.214 3.786 6 N -0.484 5.484 7 C -0.025 4.025 8 C -0.111 4.111 9 H 0.104 0.896 10 C 0.522 3.478 11 O -0.530 6.530 12 N -0.713 5.713 13 C 0.141 3.859 14 H 0.107 0.893 15 C 0.129 3.871 16 N -0.601 5.601 17 C -0.334 4.334 18 H 0.081 0.919 19 C -0.013 4.013 20 N -0.909 5.909 21 Si 1.053 2.947 22 H -0.294 1.294 23 H -0.293 1.293 24 H -0.297 1.297 25 C 0.093 3.907 26 C 0.085 3.915 27 H 0.069 0.931 28 O -0.559 6.559 29 C -0.116 4.116 30 C 0.104 3.896 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.173 0.827 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.399 0.601 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.032 0.968 42 H 0.055 0.945 43 H 0.379 0.621 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.590 19.282 9.540 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.188 4.188 4 N -0.139 5.139 5 C -0.048 4.048 6 N -0.203 5.203 7 C -0.064 4.064 8 C -0.133 4.133 9 H 0.123 0.877 10 C 0.307 3.693 11 O -0.406 6.406 12 N -0.363 5.363 13 C 0.035 3.965 14 H 0.125 0.875 15 C 0.002 3.998 16 N -0.330 5.330 17 C -0.460 4.460 18 H 0.099 0.901 19 C -0.214 4.214 20 N -0.548 5.548 21 Si 0.885 3.115 22 H -0.222 1.222 23 H -0.221 1.221 24 H -0.224 1.224 25 C -0.033 4.033 26 C 0.025 3.975 27 H 0.086 0.914 28 O -0.363 6.363 29 C -0.154 4.154 30 C -0.018 4.018 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.190 0.810 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.233 0.767 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.226 0.774 44 H 0.121 0.879 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.687 18.040 9.367 26.944 hybrid contribution -0.543 1.505 -0.140 1.606 sum -18.230 19.545 9.228 28.275 Atomic orbital electron populations 1.20001 0.87694 1.02555 1.02054 1.20808 0.96488 0.88293 1.07828 1.22293 0.82844 1.00366 1.13335 1.45386 1.06595 1.07422 1.54481 1.23052 0.94632 0.81541 1.05602 1.69957 0.99619 1.30419 1.20308 1.20145 0.86005 0.95427 1.04826 1.21433 0.93146 0.96055 1.02645 0.87746 1.20175 0.87631 0.81025 0.80437 1.90749 1.46038 1.68378 1.35399 1.45884 1.21877 1.21936 1.46650 1.22232 0.86972 0.92847 0.94410 0.87522 1.21886 0.93244 0.89215 0.95502 1.44607 1.48744 1.38726 1.00947 1.20041 1.29858 1.08335 0.87814 0.90134 1.25767 0.94645 0.96463 1.04549 1.70877 1.23221 1.43610 1.17092 0.83995 0.75151 0.76483 0.75823 1.22175 1.22114 1.22431 1.22305 0.98912 0.95762 0.86361 1.23048 0.94041 0.93302 0.87072 0.91368 1.86512 1.77217 1.41388 1.31232 1.21739 0.98126 0.94433 1.01135 1.22055 0.81906 0.94430 1.03424 0.91567 0.91503 0.91205 0.80961 0.88369 0.88024 0.76652 0.92460 0.95422 0.92416 0.95052 0.92757 0.77406 0.87887 0.89714 0.89509 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.00 0.38 -0.13 16 2 C -0.01 -0.05 7.10 -82.72 -0.59 -0.64 16 3 C -0.06 -0.50 11.55 -16.76 -0.19 -0.69 16 4 N -0.46 -4.16 3.13 -113.74 -0.36 -4.52 16 5 C 0.21 2.38 7.65 -155.23 -1.19 1.19 16 6 N -0.48 -6.31 11.24 -6.88 -0.08 -6.39 16 7 C -0.02 -0.23 5.47 -27.50 -0.15 -0.38 16 8 C -0.11 -0.97 2.55 -91.49 -0.23 -1.20 16 9 H 0.10 0.74 8.12 -51.93 -0.42 0.32 16 10 C 0.52 6.59 7.13 -10.99 -0.08 6.51 16 11 O -0.53 -8.88 15.57 5.56 0.09 -8.80 16 12 N -0.71 -8.90 5.14 -51.73 -0.27 -9.17 16 13 C 0.14 2.36 3.04 -65.78 -0.20 2.16 16 14 H 0.11 2.06 7.73 -51.93 -0.40 1.66 16 15 C 0.13 2.61 6.92 -2.53 -0.02 2.59 16 16 N -0.60 -14.67 3.29 -170.06 -0.56 -15.23 16 17 C -0.33 -9.55 10.41 -15.06 -0.16 -9.71 16 18 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 19 C -0.01 -0.37 5.41 -17.43 -0.09 -0.47 16 20 N -0.91 -28.25 13.70 55.49 0.76 -27.49 16 21 Si 1.05 25.97 24.71 -169.99 -4.20 21.77 16 22 H -0.29 -6.72 6.70 56.52 0.38 -6.35 16 23 H -0.29 -6.86 6.84 56.52 0.39 -6.48 16 24 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 25 C 0.09 1.95 4.72 -3.06 -0.01 1.93 16 26 C 0.09 1.36 3.94 -24.89 -0.10 1.26 16 27 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 28 O -0.56 -8.07 13.39 -35.23 -0.47 -8.54 16 29 C -0.12 -0.93 4.67 -26.52 -0.12 -1.05 16 30 C 0.10 0.65 6.98 -3.92 -0.03 0.62 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.10 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.10 0.82 7.94 -51.93 -0.41 0.41 16 37 H 0.40 3.76 8.23 -40.82 -0.34 3.43 16 38 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.27 8.20 8.73 -40.82 -0.36 7.84 16 41 H 0.03 0.68 3.91 -51.93 -0.20 0.48 16 42 H 0.05 1.23 7.78 -51.93 -0.40 0.83 16 43 H 0.38 3.81 9.12 45.56 0.42 4.22 16 44 H 0.10 0.82 7.79 -51.93 -0.40 0.41 16 45 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -37.27 375.48 -8.63 -45.90 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.42 Total: 4.81 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.79 Total: 1.99 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.50 Total: -62.79 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.39 Total: -17.34 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -4.20 Total: 21.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.27 -8.63 -45.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077228873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.936 kcal (2) G-P(sol) polarization free energy of solvation -37.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds