Wall clock time and date at job start Tue Mar 31 2020 19:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34849 * 125.96251 * 2 1 4 4 N 1.36317 * 106.68905 * 180.02562 * 3 2 1 5 5 C 1.35427 * 107.39661 * 359.95660 * 4 3 2 6 6 N 1.30088 * 108.62699 * 0.06029 * 5 4 3 7 7 C 1.51061 * 123.99571 * 180.18557 * 5 4 3 8 8 C 1.53393 * 108.19655 * 15.89198 * 7 5 4 9 9 H 1.09002 * 109.50884 * 71.17197 * 8 7 5 10 10 C 1.50699 * 109.51263 * 191.26868 * 8 7 5 11 11 O 1.21279 * 119.99809 * 119.90723 * 10 8 7 12 12 N 1.34769 * 120.00028 * 299.90681 * 10 8 7 13 13 C 1.46504 * 120.00102 * 180.02562 * 12 10 8 14 14 H 1.08999 * 110.88473 * 37.42313 * 13 12 10 15 15 C 1.54909 * 111.00183 * 273.54199 * 13 12 10 16 16 N 1.47420 * 104.83286 * 204.91324 * 15 13 12 17 17 C 1.36935 * 125.65055 * 204.09311 * 16 15 13 18 18 H 1.08000 * 119.99754 * 9.69473 * 17 16 15 19 19 C 1.38817 * 120.00145 * 189.69782 * 17 16 15 20 20 N 1.31620 * 119.99782 * 209.16550 * 19 17 16 21 21 Si 1.86799 * 119.99851 * 29.16455 * 19 17 16 22 22 H 1.48501 * 109.47117 * 275.35691 * 21 19 17 23 23 H 1.48498 * 109.47233 * 35.35494 * 21 19 17 24 24 H 1.48500 * 109.46874 * 155.35570 * 21 19 17 25 25 C 1.47027 * 108.70299 * 24.35760 * 16 15 13 26 26 C 1.54333 * 107.26095 * 358.58553 * 25 16 15 27 27 H 1.09002 * 110.51783 * 96.45535 * 26 25 16 28 28 O 1.42904 * 110.84609 * 219.67072 * 26 25 16 29 29 C 1.53149 * 109.27451 * 311.22361 * 8 7 5 30 30 C 1.46475 * 127.77859 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.47508 * 269.95836 * 1 2 3 32 32 H 1.09006 * 109.47338 * 29.95218 * 1 2 3 33 33 H 1.09001 * 109.47585 * 149.95431 * 1 2 3 34 34 H 1.08000 * 126.65748 * 0.04169 * 3 2 1 35 35 H 1.09000 * 109.68426 * 256.23820 * 7 5 4 36 36 H 1.09002 * 109.75967 * 135.58834 * 7 5 4 37 37 H 0.97007 * 120.00257 * 359.97438 * 12 10 8 38 38 H 1.09008 * 110.36572 * 86.07598 * 15 13 12 39 39 H 1.09005 * 110.36910 * 323.75777 * 15 13 12 40 40 H 0.96997 * 120.00085 * 4.89661 * 20 19 17 41 41 H 1.08999 * 109.87874 * 118.12441 * 25 16 15 42 42 H 1.08992 * 109.88366 * 239.29534 * 25 16 15 43 43 H 0.96702 * 114.00020 * 293.69064 * 28 26 25 44 44 H 1.09005 * 109.46563 * 189.46326 * 29 8 7 45 45 H 1.08996 * 109.46683 * 309.45206 * 29 8 7 46 46 H 1.09003 * 109.58038 * 77.28699 * 30 4 3 47 47 H 1.09001 * 109.69328 * 316.93968 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6415 -0.0006 5 6 3.5413 -0.7120 0.0001 6 7 2.2956 -1.0869 -0.0003 7 6 4.7654 -1.5972 0.0038 8 6 5.9738 -0.7420 0.4055 9 1 5.9050 -0.4890 1.4635 10 6 7.2430 -1.5145 0.1541 11 8 8.0750 -1.0805 -0.6142 12 7 7.4536 -2.6877 0.7831 13 6 8.6878 -3.4384 0.5392 14 1 9.5371 -2.7643 0.4276 15 6 8.5427 -4.3582 -0.6988 16 7 9.5203 -5.4401 -0.4819 17 6 10.0894 -6.2097 -1.4611 18 1 9.9539 -5.9485 -2.5002 19 6 10.8404 -7.3257 -1.1182 20 7 11.8209 -7.7248 -1.9002 21 14 10.4592 -8.2611 0.4532 22 1 11.1506 -7.6118 1.5959 23 1 8.9935 -8.2519 0.6916 24 1 10.9305 -9.6631 0.3214 25 6 9.7784 -5.5600 0.9606 26 6 8.9420 -4.4726 1.6675 27 1 8.0013 -4.8885 2.0285 28 8 9.6789 -3.8806 2.7392 29 6 5.9833 0.5428 -0.4280 30 6 4.8148 1.4382 -0.0013 31 1 -0.3634 -0.0007 1.0277 32 1 -0.3634 0.8904 -0.5131 33 1 -0.3634 -0.8896 -0.5145 34 1 1.9763 2.1222 0.0006 35 1 4.9224 -2.0108 -0.9924 36 1 4.6327 -2.4066 0.7218 37 1 6.7884 -3.0347 1.3980 38 1 8.7808 -3.8088 -1.6097 39 1 7.5327 -4.7648 -0.7531 40 1 12.0652 -7.1995 -2.6782 41 1 9.4774 -6.5476 1.3101 42 1 10.8375 -5.4000 1.1622 43 1 9.8641 -4.4857 3.4705 44 1 6.9230 1.0718 -0.2692 45 1 5.8818 0.2916 -1.4838 46 1 4.9990 1.8267 1.0003 47 1 4.7149 2.2671 -0.7021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077228873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:34 Heat of formation + Delta-G solvation = -26.304829 kcal Electronic energy + Delta-G solvation = -29046.728590 eV Core-core repulsion = 25036.852855 eV Total energy + Delta-G solvation = -4009.875735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.33071 -41.31521 -39.78785 -37.35740 -36.83163 -35.72168 -34.48384 -33.91734 -32.45569 -30.69018 -29.82743 -29.31471 -28.11038 -25.98285 -25.03636 -23.98025 -22.74736 -22.02684 -21.65189 -21.08601 -20.11666 -19.70317 -18.58262 -18.13593 -17.87167 -17.61903 -16.88527 -16.55418 -16.26264 -16.15358 -15.62714 -15.22604 -15.18466 -14.94418 -14.83585 -14.70597 -14.52739 -14.45857 -14.22587 -13.84201 -13.56087 -13.39761 -13.31077 -13.12629 -13.03448 -12.83584 -12.60270 -12.49215 -12.29807 -12.15326 -12.10548 -11.65184 -11.30116 -11.16520 -10.93731 -10.85286 -10.67841 -10.46581 -10.24265 -9.22115 -9.12510 -8.74394 -5.47988 1.08447 1.37646 1.47946 1.51608 1.70459 1.84424 1.94244 2.08393 2.53520 2.86845 3.01357 3.11574 3.32478 3.44711 3.47406 3.55389 3.66712 3.81340 3.93630 3.98532 4.06537 4.12403 4.23356 4.24764 4.35344 4.38589 4.46840 4.51701 4.60724 4.63891 4.73033 4.75854 4.84394 4.92126 4.92768 4.94105 5.04253 5.06512 5.17753 5.33552 5.38822 5.52549 5.89188 6.03049 6.23977 6.44796 6.73972 6.81064 7.15444 7.16548 7.38274 8.02031 8.76031 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002510 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.461988 B =11150.984633 C =11474.063945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.455 5.455 5 C 0.196 3.804 6 N -0.525 5.525 7 C -0.020 4.020 8 C -0.094 4.094 9 H 0.134 0.866 10 C 0.522 3.478 11 O -0.575 6.575 12 N -0.699 5.699 13 C 0.155 3.845 14 H 0.077 0.923 15 C 0.128 3.872 16 N -0.624 5.624 17 C -0.332 4.332 18 H 0.041 0.959 19 C -0.071 4.071 20 N -0.944 5.944 21 Si 1.101 2.899 22 H -0.263 1.263 23 H -0.267 1.267 24 H -0.305 1.305 25 C 0.082 3.918 26 C 0.108 3.892 27 H 0.112 0.888 28 O -0.562 6.562 29 C -0.115 4.115 30 C 0.107 3.893 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.207 0.793 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.419 0.581 38 H 0.026 0.974 39 H 0.046 0.954 40 H 0.249 0.751 41 H 0.041 0.959 42 H 0.034 0.966 43 H 0.401 0.599 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.112 0.888 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.916 21.022 13.191 32.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.167 4.167 3 C -0.178 4.178 4 N -0.138 5.138 5 C -0.067 4.067 6 N -0.245 5.245 7 C -0.060 4.060 8 C -0.115 4.115 9 H 0.152 0.848 10 C 0.310 3.690 11 O -0.454 6.454 12 N -0.351 5.351 13 C 0.048 3.952 14 H 0.095 0.905 15 C 0.001 3.999 16 N -0.352 5.352 17 C -0.460 4.460 18 H 0.059 0.941 19 C -0.266 4.266 20 N -0.586 5.586 21 Si 0.926 3.074 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.233 1.233 25 C -0.044 4.044 26 C 0.048 3.952 27 H 0.130 0.870 28 O -0.370 6.370 29 C -0.153 4.153 30 C -0.014 4.014 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.257 0.743 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.253 0.747 44 H 0.123 0.877 45 H 0.083 0.917 46 H 0.130 0.870 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.056 19.819 13.074 31.080 hybrid contribution 0.186 1.074 -1.405 1.779 sum -19.870 20.894 11.669 31.105 Atomic orbital electron populations 1.20044 0.86304 1.03000 1.02616 1.21359 0.97802 0.88520 1.09033 1.22831 0.82363 1.01431 1.11223 1.45588 1.07564 1.07040 1.53561 1.23179 0.94476 0.82635 1.06405 1.69893 1.00858 1.32189 1.21571 1.20111 0.85729 0.95731 1.04395 1.21364 0.90274 0.95476 1.04422 0.84833 1.20880 0.88270 0.80747 0.79135 1.90743 1.47933 1.69434 1.37275 1.45676 1.20892 1.21566 1.46942 1.21683 0.87924 0.92191 0.93433 0.90481 1.21964 0.92956 0.88607 0.96338 1.44600 1.49715 1.38887 1.02047 1.19884 1.29690 1.08903 0.87517 0.94093 1.27203 0.94024 0.97607 1.07723 1.71000 1.25490 1.44298 1.17809 0.83402 0.76642 0.74491 0.72822 1.18892 1.19338 1.23347 1.22549 0.98975 0.98232 0.84606 1.22824 0.94772 0.90829 0.86795 0.87006 1.86484 1.77134 1.42020 1.31408 1.21708 0.99214 0.94504 0.99924 1.22239 0.79803 0.93888 1.05453 0.90900 0.89321 0.92493 0.77594 0.89969 0.86650 0.74252 0.95536 0.93643 0.94178 0.94169 0.94787 0.74740 0.87746 0.91716 0.86974 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.42 71.24 0.74 -0.13 16 2 C -0.04 -0.78 7.10 41.40 0.29 -0.48 16 3 C -0.05 -0.67 11.55 83.22 0.96 0.29 16 4 N -0.45 -7.07 3.13 -513.77 -1.61 -8.68 16 5 C 0.20 4.03 7.65 138.24 1.06 5.09 16 6 N -0.52 -13.22 11.24 -175.67 -1.98 -15.19 16 7 C -0.02 -0.35 5.47 30.09 0.16 -0.18 16 8 C -0.09 -1.41 2.55 -11.36 -0.03 -1.44 16 9 H 0.13 1.32 8.12 -2.39 -0.02 1.30 16 10 C 0.52 12.46 7.13 87.66 0.63 13.09 16 11 O -0.58 -19.42 15.57 -3.03 -0.05 -19.46 16 12 N -0.70 -15.77 5.14 -435.98 -2.24 -18.01 16 13 C 0.15 4.98 3.04 46.38 0.14 5.12 16 14 H 0.08 2.99 7.73 -2.39 -0.02 2.97 16 15 C 0.13 5.21 6.92 86.86 0.60 5.82 16 16 N -0.62 -30.63 3.29 -691.96 -2.28 -32.91 16 17 C -0.33 -19.75 10.41 84.04 0.87 -18.87 16 18 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 19 C -0.07 -4.24 5.41 84.86 0.46 -3.78 16 20 N -0.94 -61.13 13.70 21.65 0.30 -60.84 16 21 Si 1.10 51.82 24.71 68.60 1.70 53.51 16 22 H -0.26 -11.01 6.70 99.48 0.67 -10.34 16 23 H -0.27 -11.37 6.84 99.48 0.68 -10.69 16 24 H -0.31 -14.72 7.11 99.48 0.71 -14.01 16 25 C 0.08 3.27 4.72 86.73 0.41 3.68 16 26 C 0.11 3.06 3.94 31.78 0.13 3.18 16 27 H 0.11 2.31 8.00 -2.39 -0.02 2.29 16 28 O -0.56 -13.99 13.39 -148.98 -2.00 -15.98 16 29 C -0.12 -1.62 4.67 30.73 0.14 -1.48 16 30 C 0.11 0.96 6.98 86.47 0.60 1.57 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.21 1.45 8.06 -2.91 -0.02 1.42 16 35 H 0.08 1.65 8.11 -2.39 -0.02 1.63 16 36 H 0.12 1.59 7.94 -2.39 -0.02 1.57 16 37 H 0.42 6.20 8.23 -92.70 -0.76 5.44 16 38 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.25 16.36 8.73 -92.71 -0.81 15.55 16 41 H 0.04 1.58 3.91 -2.39 -0.01 1.57 16 42 H 0.03 1.50 7.78 -2.39 -0.02 1.48 16 43 H 0.40 6.12 9.12 -74.06 -0.68 5.45 16 44 H 0.10 1.48 7.79 -2.38 -0.02 1.46 16 45 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 46 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -87.14 375.48 -1.52 -88.66 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -0.54 Total: 17.45 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 7.17 Total: 11.45 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -7.80 Total: -135.63 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -2.04 Total: -35.45 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 1.70 Total: 53.51 kcal Total: -87.14 -1.52 -88.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077228873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.355 kcal (2) G-P(sol) polarization free energy of solvation -87.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds