Wall clock time and date at job start Tue Mar 31 2020 19:11:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.34849 * 125.96251 * 2 1
4 4 N 1.36317 * 106.68905 * 180.02562 * 3 2 1
5 5 C 1.35427 * 107.39661 * 359.95660 * 4 3 2
6 6 N 1.30088 * 108.62699 * 0.06029 * 5 4 3
7 7 C 1.51061 * 123.99571 * 180.18557 * 5 4 3
8 8 C 1.53393 * 108.19655 * 15.89198 * 7 5 4
9 9 H 1.09002 * 109.50884 * 71.17197 * 8 7 5
10 10 C 1.50699 * 109.51263 * 191.26868 * 8 7 5
11 11 O 1.21279 * 119.99809 * 119.90723 * 10 8 7
12 12 N 1.34769 * 120.00028 * 299.90681 * 10 8 7
13 13 C 1.46504 * 120.00102 * 180.02562 * 12 10 8
14 14 H 1.08999 * 110.88473 * 37.42313 * 13 12 10
15 15 C 1.54909 * 111.00183 * 273.54199 * 13 12 10
16 16 N 1.47420 * 104.83286 * 204.91324 * 15 13 12
17 17 C 1.36935 * 125.65055 * 204.09311 * 16 15 13
18 18 H 1.08000 * 119.99754 * 9.69473 * 17 16 15
19 19 C 1.38817 * 120.00145 * 189.69782 * 17 16 15
20 20 N 1.31620 * 119.99782 * 209.16550 * 19 17 16
21 21 Si 1.86799 * 119.99851 * 29.16455 * 19 17 16
22 22 H 1.48501 * 109.47117 * 275.35691 * 21 19 17
23 23 H 1.48498 * 109.47233 * 35.35494 * 21 19 17
24 24 H 1.48500 * 109.46874 * 155.35570 * 21 19 17
25 25 C 1.47027 * 108.70299 * 24.35760 * 16 15 13
26 26 C 1.54333 * 107.26095 * 358.58553 * 25 16 15
27 27 H 1.09002 * 110.51783 * 96.45535 * 26 25 16
28 28 O 1.42904 * 110.84609 * 219.67072 * 26 25 16
29 29 C 1.53149 * 109.27451 * 311.22361 * 8 7 5
30 30 C 1.46475 * 127.77859 * 179.97438 * 4 3 2
31 31 H 1.09003 * 109.47508 * 269.95836 * 1 2 3
32 32 H 1.09006 * 109.47338 * 29.95218 * 1 2 3
33 33 H 1.09001 * 109.47585 * 149.95431 * 1 2 3
34 34 H 1.08000 * 126.65748 * 0.04169 * 3 2 1
35 35 H 1.09000 * 109.68426 * 256.23820 * 7 5 4
36 36 H 1.09002 * 109.75967 * 135.58834 * 7 5 4
37 37 H 0.97007 * 120.00257 * 359.97438 * 12 10 8
38 38 H 1.09008 * 110.36572 * 86.07598 * 15 13 12
39 39 H 1.09005 * 110.36910 * 323.75777 * 15 13 12
40 40 H 0.96997 * 120.00085 * 4.89661 * 20 19 17
41 41 H 1.08999 * 109.87874 * 118.12441 * 25 16 15
42 42 H 1.08992 * 109.88366 * 239.29534 * 25 16 15
43 43 H 0.96702 * 114.00020 * 293.69064 * 28 26 25
44 44 H 1.09005 * 109.46563 * 189.46326 * 29 8 7
45 45 H 1.08996 * 109.46683 * 309.45206 * 29 8 7
46 46 H 1.09003 * 109.58038 * 77.28699 * 30 4 3
47 47 H 1.09001 * 109.69328 * 316.93968 * 30 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2989 1.0915 0.0000
4 7 3.5857 0.6415 -0.0006
5 6 3.5413 -0.7120 0.0001
6 7 2.2956 -1.0869 -0.0003
7 6 4.7654 -1.5972 0.0038
8 6 5.9738 -0.7420 0.4055
9 1 5.9050 -0.4890 1.4635
10 6 7.2430 -1.5145 0.1541
11 8 8.0750 -1.0805 -0.6142
12 7 7.4536 -2.6877 0.7831
13 6 8.6878 -3.4384 0.5392
14 1 9.5371 -2.7643 0.4276
15 6 8.5427 -4.3582 -0.6988
16 7 9.5203 -5.4401 -0.4819
17 6 10.0894 -6.2097 -1.4611
18 1 9.9539 -5.9485 -2.5002
19 6 10.8404 -7.3257 -1.1182
20 7 11.8209 -7.7248 -1.9002
21 14 10.4592 -8.2611 0.4532
22 1 11.1506 -7.6118 1.5959
23 1 8.9935 -8.2519 0.6916
24 1 10.9305 -9.6631 0.3214
25 6 9.7784 -5.5600 0.9606
26 6 8.9420 -4.4726 1.6675
27 1 8.0013 -4.8885 2.0285
28 8 9.6789 -3.8806 2.7392
29 6 5.9833 0.5428 -0.4280
30 6 4.8148 1.4382 -0.0013
31 1 -0.3634 -0.0007 1.0277
32 1 -0.3634 0.8904 -0.5131
33 1 -0.3634 -0.8896 -0.5145
34 1 1.9763 2.1222 0.0006
35 1 4.9224 -2.0108 -0.9924
36 1 4.6327 -2.4066 0.7218
37 1 6.7884 -3.0347 1.3980
38 1 8.7808 -3.8088 -1.6097
39 1 7.5327 -4.7648 -0.7531
40 1 12.0652 -7.1995 -2.6782
41 1 9.4774 -6.5476 1.3101
42 1 10.8375 -5.4000 1.1622
43 1 9.8641 -4.4857 3.4705
44 1 6.9230 1.0718 -0.2692
45 1 5.8818 0.2916 -1.4838
46 1 4.9990 1.8267 1.0003
47 1 4.7149 2.2671 -0.7021
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001077228873.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:11:34
Heat of formation + Delta-G solvation = -26.304829 kcal
Electronic energy + Delta-G solvation = -29046.728590 eV
Core-core repulsion = 25036.852855 eV
Total energy + Delta-G solvation = -4009.875735 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.179 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-43.33071 -41.31521 -39.78785 -37.35740 -36.83163 -35.72168 -34.48384 -33.91734
-32.45569 -30.69018 -29.82743 -29.31471 -28.11038 -25.98285 -25.03636 -23.98025
-22.74736 -22.02684 -21.65189 -21.08601 -20.11666 -19.70317 -18.58262 -18.13593
-17.87167 -17.61903 -16.88527 -16.55418 -16.26264 -16.15358 -15.62714 -15.22604
-15.18466 -14.94418 -14.83585 -14.70597 -14.52739 -14.45857 -14.22587 -13.84201
-13.56087 -13.39761 -13.31077 -13.12629 -13.03448 -12.83584 -12.60270 -12.49215
-12.29807 -12.15326 -12.10548 -11.65184 -11.30116 -11.16520 -10.93731 -10.85286
-10.67841 -10.46581 -10.24265 -9.22115 -9.12510 -8.74394 -5.47988 1.08447
1.37646 1.47946 1.51608 1.70459 1.84424 1.94244 2.08393 2.53520
2.86845 3.01357 3.11574 3.32478 3.44711 3.47406 3.55389 3.66712
3.81340 3.93630 3.98532 4.06537 4.12403 4.23356 4.24764 4.35344
4.38589 4.46840 4.51701 4.60724 4.63891 4.73033 4.75854 4.84394
4.92126 4.92768 4.94105 5.04253 5.06512 5.17753 5.33552 5.38822
5.52549 5.89188 6.03049 6.23977 6.44796 6.73972 6.81064 7.15444
7.16548 7.38274 8.02031 8.76031
Molecular weight = 334.18amu
Principal moments of inertia in cm(-1)
A = 0.019611 B = 0.002510 C = 0.002440
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1427.461988 B =11150.984633 C =11474.063945
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 C -0.039 4.039
3 C -0.045 4.045
4 N -0.455 5.455
5 C 0.196 3.804
6 N -0.525 5.525
7 C -0.020 4.020
8 C -0.094 4.094
9 H 0.134 0.866
10 C 0.522 3.478
11 O -0.575 6.575
12 N -0.699 5.699
13 C 0.155 3.845
14 H 0.077 0.923
15 C 0.128 3.872
16 N -0.624 5.624
17 C -0.332 4.332
18 H 0.041 0.959
19 C -0.071 4.071
20 N -0.944 5.944
21 Si 1.101 2.899
22 H -0.263 1.263
23 H -0.267 1.267
24 H -0.305 1.305
25 C 0.082 3.918
26 C 0.108 3.892
27 H 0.112 0.888
28 O -0.562 6.562
29 C -0.115 4.115
30 C 0.107 3.893
31 H 0.072 0.928
32 H 0.088 0.912
33 H 0.056 0.944
34 H 0.207 0.793
35 H 0.082 0.918
36 H 0.115 0.885
37 H 0.419 0.581
38 H 0.026 0.974
39 H 0.046 0.954
40 H 0.249 0.751
41 H 0.041 0.959
42 H 0.034 0.966
43 H 0.401 0.599
44 H 0.104 0.896
45 H 0.064 0.936
46 H 0.112 0.888
47 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.916 21.022 13.191 32.457
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.167 4.167
3 C -0.178 4.178
4 N -0.138 5.138
5 C -0.067 4.067
6 N -0.245 5.245
7 C -0.060 4.060
8 C -0.115 4.115
9 H 0.152 0.848
10 C 0.310 3.690
11 O -0.454 6.454
12 N -0.351 5.351
13 C 0.048 3.952
14 H 0.095 0.905
15 C 0.001 3.999
16 N -0.352 5.352
17 C -0.460 4.460
18 H 0.059 0.941
19 C -0.266 4.266
20 N -0.586 5.586
21 Si 0.926 3.074
22 H -0.189 1.189
23 H -0.193 1.193
24 H -0.233 1.233
25 C -0.044 4.044
26 C 0.048 3.952
27 H 0.130 0.870
28 O -0.370 6.370
29 C -0.153 4.153
30 C -0.014 4.014
31 H 0.091 0.909
32 H 0.107 0.893
33 H 0.075 0.925
34 H 0.224 0.776
35 H 0.100 0.900
36 H 0.134 0.866
37 H 0.257 0.743
38 H 0.045 0.955
39 H 0.064 0.936
40 H 0.058 0.942
41 H 0.058 0.942
42 H 0.052 0.948
43 H 0.253 0.747
44 H 0.123 0.877
45 H 0.083 0.917
46 H 0.130 0.870
47 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -20.056 19.819 13.074 31.080
hybrid contribution 0.186 1.074 -1.405 1.779
sum -19.870 20.894 11.669 31.105
Atomic orbital electron populations
1.20044 0.86304 1.03000 1.02616 1.21359 0.97802 0.88520 1.09033
1.22831 0.82363 1.01431 1.11223 1.45588 1.07564 1.07040 1.53561
1.23179 0.94476 0.82635 1.06405 1.69893 1.00858 1.32189 1.21571
1.20111 0.85729 0.95731 1.04395 1.21364 0.90274 0.95476 1.04422
0.84833 1.20880 0.88270 0.80747 0.79135 1.90743 1.47933 1.69434
1.37275 1.45676 1.20892 1.21566 1.46942 1.21683 0.87924 0.92191
0.93433 0.90481 1.21964 0.92956 0.88607 0.96338 1.44600 1.49715
1.38887 1.02047 1.19884 1.29690 1.08903 0.87517 0.94093 1.27203
0.94024 0.97607 1.07723 1.71000 1.25490 1.44298 1.17809 0.83402
0.76642 0.74491 0.72822 1.18892 1.19338 1.23347 1.22549 0.98975
0.98232 0.84606 1.22824 0.94772 0.90829 0.86795 0.87006 1.86484
1.77134 1.42020 1.31408 1.21708 0.99214 0.94504 0.99924 1.22239
0.79803 0.93888 1.05453 0.90900 0.89321 0.92493 0.77594 0.89969
0.86650 0.74252 0.95536 0.93643 0.94178 0.94169 0.94787 0.74740
0.87746 0.91716 0.86974 0.86653
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.87 10.42 71.24 0.74 -0.13 16
2 C -0.04 -0.78 7.10 41.40 0.29 -0.48 16
3 C -0.05 -0.67 11.55 83.22 0.96 0.29 16
4 N -0.45 -7.07 3.13 -513.77 -1.61 -8.68 16
5 C 0.20 4.03 7.65 138.24 1.06 5.09 16
6 N -0.52 -13.22 11.24 -175.67 -1.98 -15.19 16
7 C -0.02 -0.35 5.47 30.09 0.16 -0.18 16
8 C -0.09 -1.41 2.55 -11.36 -0.03 -1.44 16
9 H 0.13 1.32 8.12 -2.39 -0.02 1.30 16
10 C 0.52 12.46 7.13 87.66 0.63 13.09 16
11 O -0.58 -19.42 15.57 -3.03 -0.05 -19.46 16
12 N -0.70 -15.77 5.14 -435.98 -2.24 -18.01 16
13 C 0.15 4.98 3.04 46.38 0.14 5.12 16
14 H 0.08 2.99 7.73 -2.39 -0.02 2.97 16
15 C 0.13 5.21 6.92 86.86 0.60 5.82 16
16 N -0.62 -30.63 3.29 -691.96 -2.28 -32.91 16
17 C -0.33 -19.75 10.41 84.04 0.87 -18.87 16
18 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16
19 C -0.07 -4.24 5.41 84.86 0.46 -3.78 16
20 N -0.94 -61.13 13.70 21.65 0.30 -60.84 16
21 Si 1.10 51.82 24.71 68.60 1.70 53.51 16
22 H -0.26 -11.01 6.70 99.48 0.67 -10.34 16
23 H -0.27 -11.37 6.84 99.48 0.68 -10.69 16
24 H -0.31 -14.72 7.11 99.48 0.71 -14.01 16
25 C 0.08 3.27 4.72 86.73 0.41 3.68 16
26 C 0.11 3.06 3.94 31.78 0.13 3.18 16
27 H 0.11 2.31 8.00 -2.39 -0.02 2.29 16
28 O -0.56 -13.99 13.39 -148.98 -2.00 -15.98 16
29 C -0.12 -1.62 4.67 30.73 0.14 -1.48 16
30 C 0.11 0.96 6.98 86.47 0.60 1.57 16
31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
32 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16
33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
34 H 0.21 1.45 8.06 -2.91 -0.02 1.42 16
35 H 0.08 1.65 8.11 -2.39 -0.02 1.63 16
36 H 0.12 1.59 7.94 -2.39 -0.02 1.57 16
37 H 0.42 6.20 8.23 -92.70 -0.76 5.44 16
38 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16
39 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16
40 H 0.25 16.36 8.73 -92.71 -0.81 15.55 16
41 H 0.04 1.58 3.91 -2.39 -0.01 1.57 16
42 H 0.03 1.50 7.78 -2.39 -0.02 1.48 16
43 H 0.40 6.12 9.12 -74.06 -0.68 5.45 16
44 H 0.10 1.48 7.79 -2.38 -0.02 1.46 16
45 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16
46 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16
47 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16
Total: -1.00 -87.14 375.48 -1.52 -88.66
By element:
Atomic # 1 Polarization: 17.98 SS G_CDS: -0.54 Total: 17.45 kcal
Atomic # 6 Polarization: 4.28 SS G_CDS: 7.17 Total: 11.45 kcal
Atomic # 7 Polarization: -127.82 SS G_CDS: -7.80 Total: -135.63 kcal
Atomic # 8 Polarization: -33.40 SS G_CDS: -2.04 Total: -35.45 kcal
Atomic # 14 Polarization: 51.82 SS G_CDS: 1.70 Total: 53.51 kcal
Total: -87.14 -1.52 -88.66 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001077228873.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.355 kcal
(2) G-P(sol) polarization free energy of solvation -87.144 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.789 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.516 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.660 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds