Wall clock time and date at job start Tue Mar 31 2020 18:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30827 * 125.89932 * 2 1 4 4 N 1.40088 * 108.20781 * 179.74545 * 3 2 1 5 5 H 0.97001 * 126.03859 * 180.23466 * 4 3 2 6 6 C 1.34950 * 107.92248 * 0.35905 * 4 3 2 7 7 C 1.50700 * 126.12686 * 179.90363 * 6 4 3 8 8 C 1.35313 * 107.74316 * 359.64646 * 6 4 3 9 9 C 1.50701 * 126.03676 * 180.24597 * 8 6 4 10 10 C 1.50703 * 109.47268 * 89.99954 * 9 8 6 11 11 O 1.21285 * 119.99524 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00034 * 180.02562 * 10 9 8 13 13 C 1.44959 * 117.32457 * 356.39035 * 12 10 9 14 14 C 1.51773 * 111.99759 * 203.54508 * 13 12 10 15 15 O 1.41327 * 111.63539 * 319.67446 * 14 13 12 16 16 C 1.40783 * 118.40163 * 56.76584 * 15 14 13 17 17 H 1.08995 * 109.34951 * 188.31584 * 16 15 14 18 18 C 1.54195 * 110.22702 * 67.70400 * 16 15 14 19 19 N 1.46877 * 106.39404 * 210.33640 * 18 16 15 20 20 C 1.36937 * 125.36294 * 197.86309 * 19 18 16 21 21 H 1.08001 * 119.99621 * 169.28666 * 20 19 18 22 22 C 1.38813 * 120.00363 * 349.28017 * 20 19 18 23 23 N 1.31621 * 119.99914 * 350.24992 * 22 20 19 24 24 Si 1.86801 * 120.00010 * 170.24094 * 22 20 19 25 25 H 1.48505 * 109.46788 * 84.93739 * 24 22 20 26 26 H 1.48494 * 109.46926 * 204.93130 * 24 22 20 27 27 H 1.48498 * 109.47238 * 324.93659 * 24 22 20 28 28 C 1.46780 * 109.27105 * 17.84350 * 19 18 16 29 29 C 1.44546 * 117.32070 * 176.65705 * 12 10 9 30 30 H 1.08999 * 109.48691 * 285.85417 * 29 12 10 31 31 H 1.09004 * 109.47323 * 270.04033 * 1 2 3 32 32 H 1.08996 * 109.46988 * 30.04025 * 1 2 3 33 33 H 1.09005 * 109.46889 * 150.04184 * 1 2 3 34 34 H 1.08996 * 109.47126 * 269.69164 * 7 6 4 35 35 H 1.09001 * 109.46857 * 29.69284 * 7 6 4 36 36 H 1.08999 * 109.47125 * 149.68878 * 7 6 4 37 37 H 1.09004 * 109.47523 * 209.99632 * 9 8 6 38 38 H 1.09000 * 109.47333 * 329.99596 * 9 8 6 39 39 H 1.08998 * 109.00040 * 324.33685 * 13 12 10 40 40 H 1.09002 * 108.99353 * 83.09584 * 13 12 10 41 41 H 1.09002 * 109.15667 * 199.02111 * 14 13 12 42 42 H 1.09000 * 108.82239 * 80.10316 * 14 13 12 43 43 H 1.08997 * 110.07457 * 91.10437 * 18 16 15 44 44 H 1.09003 * 110.11841 * 329.59248 * 18 16 15 45 45 H 0.96998 * 119.99954 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.83106 * 239.35939 * 28 19 18 47 47 H 1.08999 * 109.90614 * 118.43004 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0059 5 1 4.3908 1.2079 0.0104 6 6 3.6143 -0.7154 0.0014 7 6 4.8351 -1.5990 0.0031 8 6 2.3272 -1.1330 0.0009 9 6 1.8599 -2.5658 0.0016 10 6 1.7033 -3.0423 1.4227 11 8 1.9475 -2.2924 2.3441 12 7 1.2928 -4.3021 1.6696 13 6 0.9413 -5.1233 0.5279 14 6 -0.0087 -6.2451 0.9054 15 8 0.3368 -6.8248 2.1472 16 6 0.4133 -5.9895 3.2779 17 1 0.8296 -6.5510 4.1142 18 6 -0.9888 -5.4673 3.6508 19 7 -0.7904 -4.1459 4.2605 20 6 -1.7056 -3.4855 5.0360 21 1 -1.4124 -2.6012 5.5824 22 6 -3.0101 -3.9524 5.1200 23 7 -3.4202 -4.9081 4.3131 24 14 -4.1835 -3.2247 6.3782 25 1 -4.8080 -1.9979 5.8211 26 1 -5.2412 -4.2161 6.6999 27 1 -3.4342 -2.8816 7.6135 28 6 0.5434 -3.6450 3.9079 29 6 1.2335 -4.7217 3.0516 30 1 2.2439 -4.8896 3.4243 31 1 -0.3634 0.0007 1.0277 32 1 -0.3633 0.8896 -0.5144 33 1 -0.3633 -0.8904 -0.5132 34 1 5.1301 -1.8130 -1.0241 35 1 5.6508 -1.0905 0.5170 36 1 4.6073 -2.5324 0.5178 37 1 0.9014 -2.6357 -0.5127 38 1 2.5937 -3.1875 -0.5113 39 1 0.4693 -4.4961 -0.2284 40 1 1.8496 -5.5576 0.1102 41 1 0.0207 -7.0138 0.1331 42 1 -1.0199 -5.8432 0.9691 43 1 -1.4615 -6.1416 4.3649 44 1 -1.6057 -5.3779 2.7565 45 1 -4.3317 -5.2346 4.3720 46 1 1.1226 -3.4660 4.8138 47 1 0.4539 -2.7204 3.3377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083272588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:41 Heat of formation + Delta-G solvation = 40.899846 kcal Electronic energy + Delta-G solvation = -30678.424146 eV Core-core repulsion = 26671.462624 eV Total energy + Delta-G solvation = -4006.961522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47061 -40.57654 -38.27909 -35.90203 -34.73461 -33.46172 -33.09626 -32.21502 -30.00295 -29.44564 -27.92299 -27.69844 -27.24720 -25.89531 -24.45689 -23.24543 -21.28909 -20.24818 -19.96339 -19.24129 -18.32725 -17.44508 -17.31917 -16.86235 -16.46556 -15.49980 -15.31519 -15.10194 -14.84293 -14.58619 -14.12541 -13.94147 -13.79604 -13.51094 -13.39902 -13.31991 -13.00121 -12.71276 -12.60333 -12.39030 -12.30350 -12.20093 -12.03311 -11.95120 -11.55806 -11.36648 -10.97239 -10.85029 -10.63591 -10.55391 -10.47130 -10.32398 -10.10314 -9.70200 -9.31297 -9.19519 -8.93451 -8.54972 -8.34174 -8.15954 -6.71335 -5.70694 -3.02971 1.84205 2.65132 2.84105 2.91226 3.25724 3.43365 3.48515 3.51014 4.11174 4.53424 4.54726 4.64870 4.75869 4.87271 4.88925 5.07355 5.13396 5.21121 5.24095 5.24820 5.39962 5.42406 5.44669 5.52221 5.59668 5.65156 5.73167 5.76677 5.77769 5.87792 5.97154 6.00214 6.04386 6.12303 6.14072 6.26599 6.63456 6.68450 6.89711 7.23911 7.27283 7.42000 7.49380 7.58595 7.71793 7.77753 7.88539 8.29107 8.51971 9.24285 9.85924 10.51086 11.42146 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.004112 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.004959 B = 6808.148471 C = 8174.637918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.100 3.900 3 N -0.299 5.299 4 N -0.478 5.478 5 H 0.435 0.565 6 C 0.100 3.900 7 C -0.092 4.092 8 C -0.214 4.214 9 C -0.059 4.059 10 C 0.505 3.495 11 O -0.514 6.514 12 N -0.591 5.591 13 C 0.079 3.921 14 C 0.056 3.944 15 O -0.371 6.371 16 C 0.067 3.933 17 H 0.111 0.889 18 C 0.153 3.847 19 N -0.601 5.601 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.909 3.091 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.124 3.876 29 C 0.115 3.885 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.040 0.960 45 H 0.252 0.748 46 H 0.029 0.971 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.637 1.062 -14.416 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 N -0.123 5.123 4 N -0.186 5.186 5 H 0.279 0.721 6 C -0.029 4.029 7 C -0.151 4.151 8 C -0.226 4.226 9 C -0.100 4.100 10 C 0.292 3.708 11 O -0.389 6.389 12 N -0.326 5.326 13 C -0.045 4.045 14 C -0.021 4.021 15 O -0.288 6.288 16 C 0.008 3.992 17 H 0.128 0.872 18 C 0.027 3.973 19 N -0.329 5.329 20 C -0.353 4.353 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.207 1.207 28 C -0.002 4.002 29 C 0.011 3.989 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.604 2.468 -13.836 20.268 hybrid contribution -0.342 0.051 0.630 0.719 sum 14.261 2.519 -13.206 19.599 Atomic orbital electron populations 1.20230 0.86657 1.02925 1.03807 1.22165 0.96913 0.90049 0.97570 1.77266 0.86320 1.22221 1.26459 1.46041 1.07328 1.04663 1.60577 0.72135 1.20744 0.96699 0.84988 1.00477 1.20450 0.92982 0.98659 1.02988 1.19024 0.91310 0.94722 1.17546 1.19977 1.03052 0.92433 0.94563 1.20700 0.77410 0.81096 0.91556 1.90681 1.48474 1.54025 1.45762 1.46728 1.66539 1.13283 1.06092 1.21603 0.99781 0.94512 0.88622 1.22207 0.97836 0.95448 0.86611 1.86845 1.89988 1.36380 1.15573 1.22990 0.98860 0.89929 0.87394 0.87160 1.21655 0.90003 0.87379 0.98214 1.44231 1.12647 1.16574 1.59445 1.18991 0.89055 1.08402 1.18857 0.90622 1.24801 0.96607 0.99413 0.99475 1.69953 1.16872 1.31240 1.38646 0.86179 0.80637 0.78020 0.81196 1.21527 1.21623 1.20731 1.21803 0.86815 0.96120 0.95447 1.21504 0.99405 0.97044 0.80990 0.91503 0.89805 0.90968 0.90558 0.90211 0.91047 0.89686 0.88349 0.88729 0.89983 0.91847 0.87928 0.92091 0.92076 0.94198 0.93780 0.95291 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.26 36.01 0.37 -0.64 16 2 C 0.10 1.47 7.22 -82.41 -0.59 0.87 16 3 N -0.30 -4.49 12.70 33.67 0.43 -4.06 16 4 N -0.48 -5.68 7.36 33.48 0.25 -5.43 16 5 H 0.44 3.63 8.96 -182.61 -1.64 1.99 16 6 C 0.10 1.16 7.21 -82.26 -0.59 0.57 16 7 C -0.09 -0.72 10.04 36.01 0.36 -0.36 16 8 C -0.21 -2.87 4.59 -105.05 -0.48 -3.35 16 9 C -0.06 -0.69 4.18 -29.03 -0.12 -0.82 16 10 C 0.50 8.05 7.04 -10.98 -0.08 7.98 16 11 O -0.51 -10.25 13.06 5.55 0.07 -10.18 16 12 N -0.59 -9.37 3.09 -169.12 -0.52 -9.89 16 13 C 0.08 0.94 5.85 -5.49 -0.03 0.91 16 14 C 0.06 0.78 6.73 36.54 0.25 1.02 16 15 O -0.37 -6.38 10.25 -34.36 -0.35 -6.73 16 16 C 0.07 1.29 3.91 -26.27 -0.10 1.19 16 17 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 18 C 0.15 3.71 4.99 -3.21 -0.02 3.70 16 19 N -0.60 -15.82 3.39 -171.42 -0.58 -16.40 16 20 C -0.22 -6.46 10.21 -15.06 -0.15 -6.62 16 21 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 22 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 23 N -0.92 -27.11 10.67 55.49 0.59 -26.51 16 24 Si 0.91 22.51 29.56 -169.99 -5.03 17.48 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.12 2.84 6.06 -3.42 -0.02 2.82 16 29 C 0.11 2.14 3.34 -68.66 -0.23 1.92 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.86 7.26 -51.93 -0.38 0.48 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.72 7.78 -51.93 -0.40 0.32 16 37 H 0.10 1.01 6.23 -51.93 -0.32 0.69 16 38 H 0.09 0.82 7.72 -51.93 -0.40 0.42 16 39 H 0.08 0.80 6.33 -51.93 -0.33 0.47 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 43 H 0.06 1.65 7.33 -51.93 -0.38 1.27 16 44 H 0.04 1.06 6.09 -51.93 -0.32 0.74 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 1.59 5.18 -51.93 -0.27 1.32 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -36.29 367.47 -9.28 -45.58 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.14 Total: 1.70 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -1.54 Total: 8.90 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.16 Total: -62.30 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.28 Total: -16.91 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.29 -9.28 -45.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083272588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.478 kcal (2) G-P(sol) polarization free energy of solvation -36.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds