Wall clock time and date at job start Tue Mar 31 2020 18:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30827 * 125.89932 * 2 1 4 4 N 1.40088 * 108.20781 * 179.74545 * 3 2 1 5 5 H 0.97001 * 126.03859 * 180.23466 * 4 3 2 6 6 C 1.34950 * 107.92248 * 0.35905 * 4 3 2 7 7 C 1.50700 * 126.12686 * 179.90363 * 6 4 3 8 8 C 1.35313 * 107.74316 * 359.64646 * 6 4 3 9 9 C 1.50701 * 126.03676 * 180.24597 * 8 6 4 10 10 C 1.50703 * 109.47268 * 89.99954 * 9 8 6 11 11 O 1.21285 * 119.99524 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00034 * 180.02562 * 10 9 8 13 13 C 1.44959 * 117.32457 * 356.39035 * 12 10 9 14 14 C 1.51773 * 111.99759 * 203.54508 * 13 12 10 15 15 O 1.41327 * 111.63539 * 319.67446 * 14 13 12 16 16 C 1.40783 * 118.40163 * 56.76584 * 15 14 13 17 17 H 1.08995 * 109.34951 * 188.31584 * 16 15 14 18 18 C 1.54195 * 110.22702 * 67.70400 * 16 15 14 19 19 N 1.46877 * 106.39404 * 210.33640 * 18 16 15 20 20 C 1.36937 * 125.36294 * 197.86309 * 19 18 16 21 21 H 1.08001 * 119.99621 * 169.28666 * 20 19 18 22 22 C 1.38813 * 120.00363 * 349.28017 * 20 19 18 23 23 N 1.31621 * 119.99914 * 350.24992 * 22 20 19 24 24 Si 1.86801 * 120.00010 * 170.24094 * 22 20 19 25 25 H 1.48505 * 109.46788 * 84.93739 * 24 22 20 26 26 H 1.48494 * 109.46926 * 204.93130 * 24 22 20 27 27 H 1.48498 * 109.47238 * 324.93659 * 24 22 20 28 28 C 1.46780 * 109.27105 * 17.84350 * 19 18 16 29 29 C 1.44546 * 117.32070 * 176.65705 * 12 10 9 30 30 H 1.08999 * 109.48691 * 285.85417 * 29 12 10 31 31 H 1.09004 * 109.47323 * 270.04033 * 1 2 3 32 32 H 1.08996 * 109.46988 * 30.04025 * 1 2 3 33 33 H 1.09005 * 109.46889 * 150.04184 * 1 2 3 34 34 H 1.08996 * 109.47126 * 269.69164 * 7 6 4 35 35 H 1.09001 * 109.46857 * 29.69284 * 7 6 4 36 36 H 1.08999 * 109.47125 * 149.68878 * 7 6 4 37 37 H 1.09004 * 109.47523 * 209.99632 * 9 8 6 38 38 H 1.09000 * 109.47333 * 329.99596 * 9 8 6 39 39 H 1.08998 * 109.00040 * 324.33685 * 13 12 10 40 40 H 1.09002 * 108.99353 * 83.09584 * 13 12 10 41 41 H 1.09002 * 109.15667 * 199.02111 * 14 13 12 42 42 H 1.09000 * 108.82239 * 80.10316 * 14 13 12 43 43 H 1.08997 * 110.07457 * 91.10437 * 18 16 15 44 44 H 1.09003 * 110.11841 * 329.59248 * 18 16 15 45 45 H 0.96998 * 119.99954 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.83106 * 239.35939 * 28 19 18 47 47 H 1.08999 * 109.90614 * 118.43004 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0059 5 1 4.3908 1.2079 0.0104 6 6 3.6143 -0.7154 0.0014 7 6 4.8351 -1.5990 0.0031 8 6 2.3272 -1.1330 0.0009 9 6 1.8599 -2.5658 0.0016 10 6 1.7033 -3.0423 1.4227 11 8 1.9475 -2.2924 2.3441 12 7 1.2928 -4.3021 1.6696 13 6 0.9413 -5.1233 0.5279 14 6 -0.0087 -6.2451 0.9054 15 8 0.3368 -6.8248 2.1472 16 6 0.4133 -5.9895 3.2779 17 1 0.8296 -6.5510 4.1142 18 6 -0.9888 -5.4673 3.6508 19 7 -0.7904 -4.1459 4.2605 20 6 -1.7056 -3.4855 5.0360 21 1 -1.4124 -2.6012 5.5824 22 6 -3.0101 -3.9524 5.1200 23 7 -3.4202 -4.9081 4.3131 24 14 -4.1835 -3.2247 6.3782 25 1 -4.8080 -1.9979 5.8211 26 1 -5.2412 -4.2161 6.6999 27 1 -3.4342 -2.8816 7.6135 28 6 0.5434 -3.6450 3.9079 29 6 1.2335 -4.7217 3.0516 30 1 2.2439 -4.8896 3.4243 31 1 -0.3634 0.0007 1.0277 32 1 -0.3633 0.8896 -0.5144 33 1 -0.3633 -0.8904 -0.5132 34 1 5.1301 -1.8130 -1.0241 35 1 5.6508 -1.0905 0.5170 36 1 4.6073 -2.5324 0.5178 37 1 0.9014 -2.6357 -0.5127 38 1 2.5937 -3.1875 -0.5113 39 1 0.4693 -4.4961 -0.2284 40 1 1.8496 -5.5576 0.1102 41 1 0.0207 -7.0138 0.1331 42 1 -1.0199 -5.8432 0.9691 43 1 -1.4615 -6.1416 4.3649 44 1 -1.6057 -5.3779 2.7565 45 1 -4.3317 -5.2346 4.3720 46 1 1.1226 -3.4660 4.8138 47 1 0.4539 -2.7204 3.3377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083272588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:40 Heat of formation + Delta-G solvation = 13.949926 kcal Electronic energy + Delta-G solvation = -30679.592782 eV Core-core repulsion = 26671.462624 eV Total energy + Delta-G solvation = -4008.130158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47900 -41.86667 -39.62474 -37.62905 -36.02120 -34.58032 -34.31185 -33.71888 -31.67092 -30.39203 -29.49032 -28.99928 -28.42855 -27.06608 -26.22756 -24.58664 -22.81963 -21.67026 -21.09871 -20.39571 -19.59450 -19.07272 -18.28340 -18.19096 -18.11144 -16.83991 -16.76026 -16.38031 -16.25451 -15.90910 -15.65161 -15.22156 -14.94340 -14.94089 -14.45301 -14.34882 -14.16248 -14.06823 -13.91297 -13.81487 -13.50300 -13.23587 -13.16436 -13.02419 -12.86449 -12.81817 -12.77971 -12.50172 -12.34581 -12.13935 -12.09460 -11.86943 -11.58828 -11.44983 -10.78230 -10.69415 -10.35807 -10.17565 -9.45739 -9.30359 -8.84562 -7.91161 -5.26664 0.92272 1.42849 1.44656 1.53855 1.58494 1.74002 1.99991 2.10029 2.46687 2.82128 3.27052 3.44526 3.68694 3.74569 3.76446 3.78182 3.90689 4.05036 4.09724 4.20524 4.27771 4.29988 4.41593 4.44038 4.48297 4.52044 4.60102 4.65890 4.76496 4.77667 4.84282 4.94675 4.97637 5.06406 5.07056 5.11527 5.15650 5.25444 5.35965 5.48566 5.61295 5.70724 5.72786 6.15858 6.36461 6.47776 6.51050 6.75204 7.05861 7.31848 7.72776 8.36218 9.19509 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.004112 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.004959 B = 6808.148471 C = 8174.637918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.078 3.922 3 N -0.337 5.337 4 N -0.473 5.473 5 H 0.448 0.552 6 C 0.108 3.892 7 C -0.090 4.090 8 C -0.241 4.241 9 C -0.047 4.047 10 C 0.501 3.499 11 O -0.563 6.563 12 N -0.596 5.596 13 C 0.072 3.928 14 C 0.047 3.953 15 O -0.373 6.373 16 C 0.087 3.913 17 H 0.122 0.878 18 C 0.164 3.836 19 N -0.619 5.619 20 C -0.250 4.250 21 H 0.068 0.932 22 C -0.054 4.054 23 N -0.942 5.942 24 Si 0.975 3.025 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.274 1.274 28 C 0.125 3.875 29 C 0.128 3.872 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.137 0.863 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.148 0.852 42 H 0.028 0.972 43 H 0.024 0.976 44 H 0.013 0.987 45 H 0.250 0.750 46 H 0.017 0.983 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.628 0.004 -16.557 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 N -0.161 5.161 4 N -0.182 5.182 5 H 0.294 0.706 6 C -0.022 4.022 7 C -0.148 4.148 8 C -0.252 4.252 9 C -0.088 4.088 10 C 0.291 3.709 11 O -0.441 6.441 12 N -0.330 5.330 13 C -0.049 4.049 14 C -0.029 4.029 15 O -0.290 6.290 16 C 0.027 3.973 17 H 0.139 0.861 18 C 0.038 3.962 19 N -0.347 5.347 20 C -0.379 4.379 21 H 0.086 0.914 22 C -0.248 4.248 23 N -0.590 5.590 24 Si 0.803 3.197 25 H -0.211 1.211 26 H -0.212 1.212 27 H -0.199 1.199 28 C 0.000 4.000 29 C 0.022 3.978 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.154 0.846 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.166 0.834 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.614 1.405 -16.018 23.121 hybrid contribution -0.943 0.419 1.260 1.628 sum 15.672 1.824 -14.758 21.604 Atomic orbital electron populations 1.20218 0.86518 1.04324 1.02344 1.22468 0.97485 0.90894 0.97974 1.77174 0.87806 1.23184 1.27950 1.46103 1.06924 1.05351 1.59868 0.70595 1.21384 0.97690 0.85030 0.98084 1.20604 0.91489 0.97664 1.05064 1.19317 0.91862 0.95203 1.18860 1.20022 1.05104 0.91980 0.91644 1.21511 0.76050 0.80395 0.92966 1.90662 1.50666 1.55167 1.47651 1.46886 1.66382 1.14079 1.05689 1.21966 1.01458 0.93937 0.87575 1.22575 0.96693 0.97621 0.86058 1.86854 1.89780 1.36215 1.16115 1.22642 0.95250 0.90442 0.88956 0.86070 1.21434 0.92923 0.86051 0.95757 1.44485 1.13441 1.17481 1.59250 1.19264 0.90185 1.08727 1.19678 0.91364 1.25594 0.98000 0.99955 1.01247 1.70141 1.16937 1.32177 1.39759 0.85165 0.78360 0.77257 0.78935 1.21056 1.21249 1.19941 1.21806 0.85575 0.97036 0.95562 1.21185 0.99277 0.94722 0.82581 0.89772 0.92562 0.89993 0.88835 0.87183 0.89709 0.89882 0.86761 0.84566 0.87326 0.87493 0.83407 0.95331 0.95802 0.96934 0.94103 0.96506 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.01 10.26 71.24 0.73 -1.28 16 2 C 0.08 2.27 7.22 43.10 0.31 2.58 16 3 N -0.34 -10.10 12.70 -47.39 -0.60 -10.70 16 4 N -0.47 -10.66 7.36 -48.00 -0.35 -11.01 16 5 H 0.45 6.88 8.96 -213.33 -1.91 4.97 16 6 C 0.11 2.27 7.21 41.40 0.30 2.57 16 7 C -0.09 -1.07 10.04 71.24 0.71 -0.35 16 8 C -0.24 -6.02 4.59 -20.14 -0.09 -6.11 16 9 C -0.05 -0.95 4.18 29.10 0.12 -0.83 16 10 C 0.50 15.14 7.04 87.66 0.62 15.75 16 11 O -0.56 -22.54 13.06 -3.05 -0.04 -22.58 16 12 N -0.60 -17.58 3.09 -807.36 -2.50 -20.07 16 13 C 0.07 1.44 5.85 86.26 0.51 1.95 16 14 C 0.05 1.17 6.73 71.58 0.48 1.65 16 15 O -0.37 -12.11 10.25 -145.85 -1.50 -13.61 16 16 C 0.09 3.29 3.91 30.89 0.12 3.41 16 17 H 0.12 4.31 8.14 -2.39 -0.02 4.29 16 18 C 0.16 8.26 4.99 86.71 0.43 8.70 16 19 N -0.62 -33.96 3.39 -696.24 -2.36 -36.32 16 20 C -0.25 -14.95 10.21 84.03 0.86 -14.09 16 21 H 0.07 4.06 7.85 -2.91 -0.02 4.04 16 22 C -0.05 -3.17 5.40 84.86 0.46 -2.71 16 23 N -0.94 -57.41 10.67 21.65 0.23 -57.18 16 24 Si 0.98 47.34 29.56 68.60 2.03 49.36 16 25 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 28 C 0.13 5.94 6.06 86.63 0.52 6.47 16 29 C 0.13 4.68 3.34 45.56 0.15 4.83 16 30 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 2.05 7.26 -2.38 -0.02 2.04 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.08 7.78 -2.39 -0.02 1.07 16 37 H 0.11 1.95 6.23 -2.38 -0.01 1.94 16 38 H 0.14 1.61 7.72 -2.39 -0.02 1.59 16 39 H 0.11 1.62 6.33 -2.39 -0.02 1.61 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.03 0.90 6.73 -2.39 -0.02 0.88 16 43 H 0.02 1.35 7.33 -2.39 -0.02 1.33 16 44 H 0.01 0.70 6.09 -2.39 -0.01 0.69 16 45 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.04 2.30 5.18 -2.39 -0.01 2.28 16 Total: -1.00 -84.75 367.47 0.24 -84.51 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -0.90 Total: 15.07 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 6.23 Total: 22.53 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -5.58 Total: -135.29 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.53 Total: -36.19 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -84.75 0.24 -84.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083272588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.460 kcal (2) G-P(sol) polarization free energy of solvation -84.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds