Wall clock time and date at job start Tue Mar 31 2020 19:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34844 * 125.96913 * 2 1 4 4 N 1.36316 * 106.69185 * 180.02562 * 3 2 1 5 5 C 1.35417 * 107.39835 * 359.95735 * 4 3 2 6 6 N 1.30090 * 108.63032 * 0.05927 * 5 4 3 7 7 C 1.51043 * 123.98287 * 180.08503 * 5 4 3 8 8 C 1.53398 * 108.20788 * 15.95511 * 7 5 4 9 9 H 1.09002 * 109.55097 * 71.14334 * 8 7 5 10 10 C 1.50704 * 109.50850 * 191.25454 * 8 7 5 11 11 O 1.21282 * 119.99963 * 119.76193 * 10 8 7 12 12 N 1.34773 * 120.00040 * 299.76922 * 10 8 7 13 13 C 1.46508 * 120.00075 * 179.97438 * 12 10 8 14 14 H 1.08999 * 110.88573 * 31.11624 * 13 12 10 15 15 C 1.54908 * 111.00204 * 267.19055 * 13 12 10 16 16 N 1.47424 * 104.83121 * 204.91396 * 15 13 12 17 17 C 1.36937 * 125.64705 * 204.11265 * 16 15 13 18 18 H 1.08002 * 120.00089 * 354.82092 * 17 16 15 19 19 C 1.38815 * 119.99889 * 174.82698 * 17 16 15 20 20 N 1.31616 * 119.99923 * 7.04787 * 19 17 16 21 21 Si 1.86800 * 119.99900 * 187.05400 * 19 17 16 22 22 H 1.48494 * 109.46917 * 94.98506 * 21 19 17 23 23 H 1.48496 * 109.46807 * 214.97997 * 21 19 17 24 24 H 1.48498 * 109.47203 * 334.98185 * 21 19 17 25 25 C 1.47021 * 108.69989 * 24.13290 * 16 15 13 26 26 C 1.54320 * 107.27600 * 358.94031 * 25 16 15 27 27 H 1.08995 * 110.72251 * 219.44815 * 26 25 16 28 28 O 1.42895 * 110.87218 * 96.23763 * 26 25 16 29 29 C 1.53148 * 109.24361 * 311.18412 * 8 7 5 30 30 C 1.46474 * 127.77545 * 179.97438 * 4 3 2 31 31 H 1.08991 * 109.47251 * 89.99506 * 1 2 3 32 32 H 1.09003 * 109.46793 * 209.99799 * 1 2 3 33 33 H 1.09006 * 109.46462 * 329.99213 * 1 2 3 34 34 H 1.08009 * 126.65490 * 0.02562 * 3 2 1 35 35 H 1.09003 * 109.71568 * 256.28031 * 7 5 4 36 36 H 1.08994 * 109.75131 * 135.65280 * 7 5 4 37 37 H 0.96998 * 120.00204 * 359.97438 * 12 10 8 38 38 H 1.08996 * 110.37004 * 323.75940 * 15 13 12 39 39 H 1.09008 * 110.36104 * 86.07902 * 15 13 12 40 40 H 0.96997 * 120.00026 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.88355 * 239.51933 * 25 16 15 42 42 H 1.09003 * 110.00739 * 118.43350 * 25 16 15 43 43 H 0.96698 * 113.99906 * 66.39359 * 28 26 25 44 44 H 1.09005 * 109.46839 * 189.49245 * 29 8 7 45 45 H 1.09003 * 109.46627 * 309.47359 * 29 8 7 46 46 H 1.09001 * 109.59041 * 77.37396 * 30 4 3 47 47 H 1.08998 * 109.57662 * 316.95921 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0913 0.0000 4 7 3.5858 0.6413 -0.0006 5 6 3.5414 -0.7121 0.0000 6 7 2.2957 -1.0871 -0.0003 7 6 4.7655 -1.5970 0.0015 8 6 5.9744 -0.7421 0.4027 9 1 5.9073 -0.4894 1.4609 10 6 7.2433 -1.5146 0.1494 11 8 8.0733 -1.0814 -0.6215 12 7 7.4557 -2.6870 0.7794 13 6 8.6890 -3.4383 0.5327 14 1 9.5160 -2.7647 0.3078 15 6 8.4908 -4.4737 -0.6023 16 7 9.5023 -5.5147 -0.3443 17 6 10.0292 -6.3648 -1.2796 18 1 9.6461 -6.3610 -2.2894 19 6 11.0556 -7.2315 -0.9299 20 7 11.4283 -7.3365 0.3280 21 14 11.9078 -8.2487 -2.2446 22 1 13.1341 -7.5444 -2.6978 23 1 12.2765 -9.5734 -1.6840 24 1 10.9904 -8.4368 -3.3971 25 6 9.8512 -5.4893 1.0837 26 6 9.0310 -4.3564 1.7358 27 1 9.6305 -3.8206 2.4716 28 8 7.8395 -4.8702 2.3344 29 6 5.9828 0.5428 -0.4306 30 6 4.8149 1.4379 -0.0013 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3632 0.8900 0.5140 34 1 1.9765 2.1221 0.0004 35 1 4.9218 -2.0101 -0.9950 36 1 4.6336 -2.4069 0.7189 37 1 6.7920 -3.0334 1.3961 38 1 7.4883 -4.8992 -0.5568 39 1 8.6632 -4.0097 -1.5735 40 1 12.1458 -7.9418 0.5723 41 1 10.9165 -5.2908 1.2016 42 1 9.5988 -6.4435 1.5464 43 1 7.9983 -5.4504 3.0915 44 1 6.9228 1.0718 -0.2731 45 1 5.8799 0.2917 -1.4863 46 1 5.0001 1.8252 1.0006 47 1 4.7128 2.2663 -0.7023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083568546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:41 Heat of formation + Delta-G solvation = -26.889063 kcal Electronic energy + Delta-G solvation = -29055.528445 eV Core-core repulsion = 25045.627376 eV Total energy + Delta-G solvation = -4009.901069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.31562 -41.20770 -39.59952 -37.31426 -36.45430 -35.48802 -34.40294 -33.49063 -32.43703 -30.49215 -29.83137 -28.88603 -28.00207 -26.41771 -25.05688 -24.01192 -22.36774 -21.81500 -21.49762 -21.00765 -20.08993 -19.21969 -18.36040 -18.04479 -17.75940 -16.96163 -16.87998 -16.56327 -16.27411 -15.80166 -15.48125 -15.18317 -14.96413 -14.89441 -14.76389 -14.65780 -14.48176 -14.26146 -13.95765 -13.79704 -13.47328 -13.19438 -13.11396 -12.84031 -12.81522 -12.75877 -12.58762 -12.30341 -12.24751 -12.12991 -12.10232 -11.92165 -11.89667 -10.97429 -10.88581 -10.81111 -10.75401 -10.45298 -10.08020 -9.11110 -8.95112 -7.90993 -5.25285 1.09761 1.44371 1.46345 1.52428 1.55265 1.87077 2.04233 2.09647 2.47684 3.10687 3.23036 3.29032 3.48250 3.50296 3.59572 3.68189 3.83703 3.95633 4.01318 4.08341 4.14783 4.27206 4.27614 4.36473 4.47009 4.51842 4.53728 4.65428 4.67414 4.75786 4.83241 4.87525 4.92823 5.03645 5.06620 5.09908 5.18905 5.36605 5.40196 5.43512 5.49942 5.64720 5.90720 6.13971 6.25567 6.56872 6.87664 7.05782 7.18270 7.22693 7.70238 8.33972 9.19383 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.002373 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.223574 B =11795.790938 C =11938.940454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.040 4.040 3 C -0.044 4.044 4 N -0.454 5.454 5 C 0.196 3.804 6 N -0.526 5.526 7 C -0.020 4.020 8 C -0.095 4.095 9 H 0.131 0.869 10 C 0.520 3.480 11 O -0.576 6.576 12 N -0.694 5.694 13 C 0.152 3.848 14 H 0.095 0.905 15 C 0.131 3.869 16 N -0.622 5.622 17 C -0.247 4.247 18 H 0.076 0.924 19 C -0.059 4.059 20 N -0.946 5.946 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.272 1.272 25 C 0.158 3.842 26 C 0.092 3.908 27 H 0.092 0.908 28 O -0.564 6.564 29 C -0.114 4.114 30 C 0.106 3.894 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.209 0.791 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.419 0.581 38 H 0.025 0.975 39 H 0.029 0.971 40 H 0.250 0.750 41 H 0.026 0.974 42 H 0.023 0.977 43 H 0.398 0.602 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.112 0.888 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 21.165 6.126 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.169 4.169 3 C -0.177 4.177 4 N -0.137 5.137 5 C -0.067 4.067 6 N -0.247 5.247 7 C -0.059 4.059 8 C -0.116 4.116 9 H 0.148 0.852 10 C 0.307 3.693 11 O -0.455 6.455 12 N -0.346 5.346 13 C 0.045 3.955 14 H 0.113 0.887 15 C 0.004 3.996 16 N -0.349 5.349 17 C -0.375 4.375 18 H 0.094 0.906 19 C -0.253 4.253 20 N -0.594 5.594 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.197 1.197 25 C 0.033 3.967 26 C 0.032 3.968 27 H 0.109 0.891 28 O -0.373 6.373 29 C -0.152 4.152 30 C -0.014 4.014 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.226 0.774 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.257 0.743 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.249 0.751 44 H 0.126 0.874 45 H 0.084 0.916 46 H 0.130 0.870 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.523 20.964 5.114 27.178 hybrid contribution 1.062 -0.919 -0.172 1.415 sum -15.461 20.045 4.942 25.793 Atomic orbital electron populations 1.20044 0.86265 1.03162 1.02449 1.21384 0.97839 0.88513 1.09119 1.22843 0.82310 1.01429 1.11116 1.45597 1.07660 1.06926 1.53487 1.23114 0.94375 0.82704 1.06493 1.69901 1.00925 1.32313 1.21560 1.20060 0.86107 0.95684 1.04092 1.21361 0.90357 0.95603 1.04311 0.85160 1.20871 0.88263 0.80872 0.79307 1.90716 1.47928 1.69652 1.37193 1.45655 1.21510 1.21051 1.46367 1.21934 0.88025 0.91352 0.94185 0.88718 1.21896 0.92116 0.88988 0.96577 1.44559 1.46742 1.37974 1.05601 1.19393 1.13204 1.13354 0.91592 0.90633 1.25610 0.99667 1.01359 0.98660 1.70114 1.31928 1.41201 1.16197 0.85078 0.78556 0.77436 0.78382 1.21281 1.21691 1.19655 1.21728 0.96131 0.95126 0.83755 1.23130 0.86515 0.93468 0.93722 0.89063 1.86207 1.30835 1.68873 1.51353 1.21710 0.99321 0.94259 0.99863 1.22276 0.79777 0.93899 1.05479 0.91296 0.92379 0.89017 0.77395 0.90088 0.87542 0.74343 0.95762 0.95279 0.94097 0.95580 0.95870 0.75102 0.87428 0.91614 0.86966 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.42 71.24 0.74 -0.19 16 2 C -0.04 -0.86 7.10 41.40 0.29 -0.56 16 3 C -0.04 -0.69 11.55 83.22 0.96 0.27 16 4 N -0.45 -7.63 3.13 -513.78 -1.61 -9.24 16 5 C 0.20 4.45 7.65 138.24 1.06 5.51 16 6 N -0.53 -14.33 11.24 -175.69 -1.98 -16.31 16 7 C -0.02 -0.41 5.47 30.09 0.16 -0.24 16 8 C -0.09 -1.64 2.55 -11.36 -0.03 -1.67 16 9 H 0.13 1.62 8.12 -2.39 -0.02 1.60 16 10 C 0.52 13.43 7.13 87.66 0.63 14.06 16 11 O -0.58 -19.53 15.47 -3.03 -0.05 -19.58 16 12 N -0.69 -18.58 5.07 -435.94 -2.21 -20.79 16 13 C 0.15 5.32 3.31 46.38 0.15 5.47 16 14 H 0.09 3.58 7.54 -2.39 -0.02 3.56 16 15 C 0.13 5.73 6.92 86.85 0.60 6.33 16 16 N -0.62 -32.53 3.39 -691.99 -2.35 -34.88 16 17 C -0.25 -14.19 10.27 84.03 0.86 -13.32 16 18 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 19 C -0.06 -3.40 5.48 84.86 0.46 -2.94 16 20 N -0.95 -55.81 10.36 21.65 0.22 -55.59 16 21 Si 0.98 46.19 29.56 68.60 2.03 48.22 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 25 C 0.16 7.44 5.15 86.73 0.45 7.89 16 26 C 0.09 3.09 4.19 31.78 0.13 3.22 16 27 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 28 O -0.56 -16.11 12.15 -148.98 -1.81 -17.92 16 29 C -0.11 -1.69 4.67 30.74 0.14 -1.54 16 30 C 0.11 1.04 6.98 86.48 0.60 1.64 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.08 1.87 8.11 -2.39 -0.02 1.85 16 36 H 0.11 2.03 7.95 -2.39 -0.02 2.01 16 37 H 0.42 9.58 7.31 -92.71 -0.68 8.90 16 38 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.03 1.37 7.30 -2.39 -0.02 1.35 16 42 H 0.02 1.20 7.54 -2.39 -0.02 1.19 16 43 H 0.40 8.53 9.12 -74.06 -0.68 7.85 16 44 H 0.11 1.53 7.79 -2.38 -0.02 1.51 16 45 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 46 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -79.16 378.77 -0.88 -80.04 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -0.35 Total: 22.13 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 7.22 Total: 23.92 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -7.92 Total: -136.81 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.86 Total: -37.50 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -79.16 -0.88 -80.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083568546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.147 kcal (2) G-P(sol) polarization free energy of solvation -79.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds