Wall clock time and date at job start Tue Mar 31 2020 18:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35355 * 117.00131 * 2 1 4 4 C 1.38997 * 126.40763 * 267.61989 * 3 2 1 5 5 C 1.46918 * 126.49819 * 0.02562 * 4 3 2 6 6 O 1.21667 * 120.00219 * 89.99776 * 5 4 3 7 7 N 1.34773 * 119.99873 * 269.99901 * 5 4 3 8 8 C 1.47292 * 136.54355 * 0.02562 * 7 5 4 9 9 C 1.54080 * 87.60787 * 151.36241 * 8 7 5 10 10 H 1.09003 * 115.04577 * 142.49889 * 9 8 7 11 11 C 1.53063 * 111.39429 * 273.96915 * 9 8 7 12 12 C 1.53140 * 109.21541 * 142.39914 * 11 9 8 13 13 N 1.46547 * 108.25287 * 301.59057 * 12 11 9 14 14 C 1.36935 * 119.73991 * 236.44655 * 13 12 11 15 15 H 1.08003 * 119.99894 * 24.98620 * 14 13 12 16 16 C 1.38807 * 119.99819 * 204.98833 * 14 13 12 17 17 N 1.31618 * 120.00451 * 16.55715 * 16 14 13 18 18 Si 1.86805 * 119.99934 * 196.55534 * 16 14 13 19 19 H 1.48497 * 109.47117 * 59.99962 * 18 16 14 20 20 H 1.48502 * 109.47096 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46889 * 299.99783 * 18 16 14 22 22 C 1.45706 * 120.51879 * 56.42171 * 13 12 11 23 23 C 1.46463 * 136.54368 * 179.62364 * 7 5 4 24 24 H 1.09002 * 111.44253 * 96.38622 * 23 7 5 25 25 C 1.41461 * 107.00479 * 179.97438 * 4 3 2 26 26 C 1.50700 * 125.92988 * 179.97438 * 25 4 3 27 27 N 1.30317 * 108.13819 * 0.02562 * 25 4 3 28 28 N 1.34663 * 126.40164 * 87.30949 * 3 2 1 29 29 C 1.46496 * 125.74238 * 359.96985 * 28 3 2 30 30 H 1.09000 * 109.47331 * 304.92885 * 1 2 3 31 31 H 1.09004 * 109.46784 * 64.92180 * 1 2 3 32 32 H 1.08999 * 109.47271 * 184.92210 * 1 2 3 33 33 H 1.09000 * 113.52538 * 266.04629 * 8 7 5 34 34 H 1.08998 * 113.53178 * 36.67367 * 8 7 5 35 35 H 1.08998 * 109.51192 * 262.32513 * 11 9 8 36 36 H 1.09000 * 109.50898 * 22.47396 * 11 9 8 37 37 H 1.09002 * 109.70987 * 61.27932 * 12 11 9 38 38 H 1.09003 * 109.71078 * 181.90268 * 12 11 9 39 39 H 0.97002 * 120.00646 * 180.02562 * 17 16 14 40 40 H 1.08998 * 108.78752 * 80.89909 * 22 13 12 41 41 H 1.09004 * 108.78271 * 199.11303 * 22 13 12 42 42 H 1.08998 * 109.47259 * 90.00454 * 26 25 4 43 43 H 1.09006 * 109.47021 * 210.00370 * 26 25 4 44 44 H 1.09000 * 109.47332 * 329.99906 * 26 25 4 45 45 H 1.08998 * 109.47344 * 94.49372 * 29 28 3 46 46 H 1.09000 * 109.46780 * 214.49781 * 29 28 3 47 47 H 1.09001 * 109.46936 * 334.49036 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.4594 1.9200 -1.1177 5 6 2.3149 1.5090 -2.5208 6 8 1.3172 1.8170 -3.1453 7 7 3.2874 0.7906 -3.1162 8 6 4.5960 0.2359 -2.7296 9 6 4.3611 -0.8740 -3.7721 10 1 5.2495 -1.1877 -4.3203 11 6 3.5572 -2.0346 -3.1807 12 6 2.5907 -2.5702 -4.2409 13 7 1.7174 -1.4716 -4.6629 14 6 0.3585 -1.6077 -4.5640 15 1 -0.0647 -2.2919 -3.8435 16 6 -0.4752 -0.8663 -5.3899 17 7 0.0104 -0.2902 -6.4691 18 14 -2.2864 -0.6863 -4.9698 19 1 -2.4243 -0.0345 -3.6427 20 1 -2.9537 0.1465 -6.0026 21 1 -2.9213 -2.0282 -4.9307 22 6 2.2839 -0.2353 -5.1862 23 6 3.5176 0.2029 -4.4378 24 1 4.1251 0.8562 -5.0641 25 6 3.0473 3.1179 -0.6482 26 6 3.6420 4.2060 -1.5046 27 7 2.9862 3.1168 0.6535 28 7 2.3610 1.9411 1.0827 29 6 2.0982 1.5709 2.4755 30 1 -0.3634 0.5884 0.8425 31 1 -0.3633 0.4356 -0.9308 32 1 -0.3634 -1.0239 0.0882 33 1 5.4342 0.8895 -2.9711 34 1 4.6274 -0.1304 -1.7035 35 1 4.2372 -2.8290 -2.8731 36 1 2.9923 -1.6833 -2.3172 37 1 3.1536 -2.9419 -5.0972 38 1 1.9900 -3.3753 -3.8176 39 1 -0.5720 0.2282 -7.0461 40 1 2.5411 -0.3834 -6.2350 41 1 1.5322 0.5512 -5.1191 42 1 2.8705 4.9343 -1.7544 43 1 4.4452 4.7004 -0.9581 44 1 4.0407 3.7702 -2.4208 45 1 2.9783 1.0829 2.8941 46 1 1.8705 2.4670 3.0528 47 1 1.2500 0.8875 2.5159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084695487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:24 Heat of formation + Delta-G solvation = 88.149334 kcal Electronic energy + Delta-G solvation = -31434.315725 eV Core-core repulsion = 27429.403095 eV Total energy + Delta-G solvation = -4004.912630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.50167 -40.25275 -38.10450 -37.28216 -35.10218 -33.94447 -32.04218 -30.40454 -30.03764 -29.61599 -28.54200 -27.11072 -26.76013 -25.70358 -23.75323 -23.05321 -21.76365 -20.90072 -20.34317 -19.55646 -18.03579 -17.45093 -16.85448 -16.31115 -16.01614 -15.79155 -15.44717 -15.27927 -14.72917 -14.25806 -14.08568 -13.62446 -13.59941 -13.49620 -13.22169 -13.10474 -12.96555 -12.80526 -12.57730 -12.42703 -12.28803 -12.16872 -11.81726 -11.72661 -11.36588 -11.15343 -11.02411 -10.60555 -10.56810 -10.39504 -10.14148 -10.10776 -9.79374 -9.70727 -9.52915 -9.20524 -8.91532 -8.43378 -8.23413 -7.96760 -6.51868 -5.59615 -2.99474 1.43177 2.13463 2.41658 3.23475 3.48999 3.51788 3.55752 3.57131 3.61654 4.33989 4.65427 4.79725 4.80549 4.94138 5.05529 5.08502 5.10405 5.19718 5.30382 5.38875 5.52762 5.59915 5.61246 5.65159 5.65272 5.72626 5.76131 5.80455 5.84830 5.88643 6.02561 6.10939 6.24374 6.27830 6.42360 6.51403 6.54275 6.62449 6.70059 6.88201 7.11521 7.39088 7.56853 7.58089 7.83091 8.00083 8.46948 8.63993 8.92518 9.42153 10.07449 10.55558 11.48904 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.005361 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.208589 B = 5221.434845 C = 5967.022977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.302 6.302 3 C 0.292 3.708 4 C -0.266 4.266 5 C 0.626 3.374 6 O -0.513 6.513 7 N -0.621 5.621 8 C 0.099 3.901 9 C -0.113 4.113 10 H 0.091 0.909 11 C -0.116 4.116 12 C 0.150 3.850 13 N -0.583 5.583 14 C -0.249 4.249 15 H 0.060 0.940 16 C 0.012 3.988 17 N -0.903 5.903 18 Si 0.897 3.103 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.167 3.833 23 C 0.121 3.879 24 H 0.071 0.929 25 C 0.117 3.883 26 C -0.074 4.074 27 N -0.285 5.285 28 N -0.374 5.374 29 C 0.100 3.900 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.018 0.982 38 H 0.054 0.946 39 H 0.252 0.748 40 H 0.030 0.970 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.944 3.193 14.963 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.212 6.212 3 C 0.121 3.879 4 C -0.282 4.282 5 C 0.413 3.587 6 O -0.387 6.387 7 N -0.357 5.357 8 C -0.025 4.025 9 C -0.132 4.132 10 H 0.109 0.891 11 C -0.155 4.155 12 C 0.023 3.977 13 N -0.306 5.306 14 C -0.379 4.379 15 H 0.078 0.922 16 C -0.187 4.187 17 N -0.547 5.547 18 Si 0.728 3.272 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 C 0.041 3.959 23 C 0.017 3.983 24 H 0.089 0.911 25 C -0.049 4.049 26 C -0.133 4.133 27 N -0.110 5.110 28 N -0.164 5.164 29 C -0.041 4.041 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.109 0.891 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.380 3.932 15.755 18.753 hybrid contribution -1.282 -0.189 -0.176 1.308 sum 8.098 3.743 15.579 17.953 Atomic orbital electron populations 1.23228 0.76593 1.04209 1.02012 1.86016 1.21566 1.20563 1.93008 1.19260 0.97189 0.85354 0.86118 1.20038 1.16690 0.98043 0.93417 1.16276 0.81770 0.76669 0.83963 1.90880 1.28479 1.54261 1.65101 1.49328 1.17829 1.53007 1.15505 1.23250 0.85896 0.93762 0.99554 1.22681 0.98548 0.94700 0.97257 0.89114 1.21845 0.97964 0.95671 1.00047 1.20707 0.91958 0.91008 0.94010 1.43434 1.02065 1.10047 1.75010 1.18997 0.81348 1.23715 1.13794 0.92233 1.24861 0.97502 1.01119 0.95180 1.70004 1.34761 1.37233 1.12716 0.86449 0.85754 0.77299 0.77698 1.21234 1.21735 1.21279 1.20146 0.92288 0.90608 0.92898 1.22486 0.98725 0.91460 0.85642 0.91108 1.22139 0.96778 0.94868 0.91074 1.20245 1.00738 0.94765 0.97519 1.77055 1.20568 1.00959 1.12445 1.48708 1.46736 1.14576 1.06340 1.21875 1.02531 1.02067 0.77639 0.93761 0.91258 0.87530 0.90698 0.91448 0.92927 0.91766 0.96394 0.92766 0.93825 0.95270 0.88069 0.89842 0.90395 0.90242 0.90317 0.89130 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.13 101.05 1.12 1.63 16 2 O -0.30 -5.06 10.37 -17.76 -0.18 -5.24 16 3 C 0.29 4.91 7.02 -16.03 -0.11 4.80 16 4 C -0.27 -4.89 5.74 -104.88 -0.60 -5.49 16 5 C 0.63 13.44 7.52 -12.75 -0.10 13.34 16 6 O -0.51 -13.47 16.35 5.22 0.09 -13.39 16 7 N -0.62 -11.99 3.34 -189.54 -0.63 -12.62 16 8 C 0.10 1.47 7.75 -11.54 -0.09 1.38 16 9 C -0.11 -1.80 4.57 -90.47 -0.41 -2.22 16 10 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 11 C -0.12 -2.02 5.69 -26.63 -0.15 -2.18 16 12 C 0.15 3.16 6.46 -3.94 -0.03 3.14 16 13 N -0.58 -15.04 3.03 -175.06 -0.53 -15.57 16 14 C -0.25 -7.13 9.52 -15.06 -0.14 -7.28 16 15 H 0.06 1.68 7.84 -52.48 -0.41 1.27 16 16 C 0.01 0.35 4.89 -17.43 -0.09 0.27 16 17 N -0.90 -27.56 11.06 55.49 0.61 -26.95 16 18 Si 0.90 23.34 29.58 -169.99 -5.03 18.31 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C 0.17 4.20 4.61 -5.57 -0.03 4.17 16 23 C 0.12 2.37 3.98 -77.99 -0.31 2.06 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 C 0.12 1.85 7.26 -82.01 -0.60 1.26 16 26 C -0.07 -0.92 10.28 36.01 0.37 -0.55 16 27 N -0.28 -4.34 12.48 33.91 0.42 -3.91 16 28 N -0.37 -5.32 3.99 -67.67 -0.27 -5.59 16 29 C 0.10 0.90 11.41 59.84 0.68 1.59 16 30 H 0.04 0.51 7.93 -51.93 -0.41 0.10 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.98 8.05 -51.93 -0.42 0.57 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.27 7.68 -51.93 -0.40 0.87 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 1.13 7.87 -51.93 -0.41 0.72 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.03 0.79 8.00 -51.93 -0.42 0.37 16 41 H 0.10 3.00 5.00 -51.93 -0.26 2.74 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.99 8.01 -51.93 -0.42 0.57 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.66 7.81 -51.93 -0.41 0.26 16 LS Contribution 385.40 15.07 5.81 5.81 Total: -1.00 -36.66 385.40 -7.52 -44.18 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.33 Total: -0.95 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: -0.47 Total: 15.93 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.40 Total: -64.64 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.10 Total: -18.63 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.03 Total: 18.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.66 -7.52 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084695487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.329 kcal (2) G-P(sol) polarization free energy of solvation -36.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds