Wall clock time and date at job start Tue Mar 31 2020 19:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30524 * 119.70585 * 2 1 4 4 N 1.28265 * 122.98472 * 180.02562 * 3 2 1 5 5 C 1.46504 * 119.03051 * 180.02562 * 4 3 2 6 6 C 1.34682 * 121.93656 * 359.70629 * 4 3 2 7 7 O 1.21903 * 120.46754 * 180.29382 * 6 4 3 8 8 C 1.42320 * 119.06814 * 0.54766 * 6 4 3 9 9 C 1.47410 * 121.30297 * 179.73993 * 8 6 4 10 10 O 1.21609 * 119.99923 * 173.58722 * 9 8 6 11 11 N 1.34778 * 119.99836 * 353.86275 * 9 8 6 12 12 C 1.46498 * 119.99506 * 184.65430 * 11 9 8 13 13 C 1.53003 * 109.46835 * 180.02562 * 12 11 9 14 14 H 1.09006 * 112.84953 * 316.19197 * 13 12 11 15 15 C 1.53776 * 113.61665 * 87.49895 * 13 12 11 16 16 C 1.53781 * 87.08087 * 139.98118 * 15 13 12 17 17 H 1.09002 * 113.61676 * 89.11705 * 16 15 13 18 18 N 1.46501 * 113.69267 * 220.00580 * 16 15 13 19 19 C 1.36935 * 120.00265 * 252.53414 * 18 16 15 20 20 H 1.07996 * 120.00256 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99869 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00185 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46961 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47218 * 120.00031 * 23 21 19 26 26 H 1.48497 * 109.47197 * 240.00112 * 23 21 19 27 27 C 1.53780 * 87.08160 * 334.56695 * 16 15 13 28 28 C 1.39323 * 117.39564 * 359.47410 * 8 6 4 29 29 C 1.50703 * 120.99016 * 180.28798 * 28 8 6 30 30 H 1.09005 * 109.46727 * 270.02079 * 1 2 3 31 31 H 1.09004 * 109.47071 * 30.01463 * 1 2 3 32 32 H 1.08990 * 109.47633 * 150.01992 * 1 2 3 33 33 H 1.08995 * 109.47235 * 0.02562 * 5 4 3 34 34 H 1.08998 * 109.47242 * 120.00231 * 5 4 3 35 35 H 1.09003 * 109.46974 * 240.00008 * 5 4 3 36 36 H 0.96995 * 119.99762 * 4.65036 * 11 9 8 37 37 H 1.09002 * 109.47293 * 299.99324 * 12 11 9 38 38 H 1.08994 * 109.47500 * 59.99958 * 12 11 9 39 39 H 1.08997 * 113.61569 * 254.53083 * 15 13 12 40 40 H 1.08998 * 113.61434 * 25.43674 * 15 13 12 41 41 H 0.97006 * 119.99836 * 72.53784 * 18 16 15 42 42 H 0.97000 * 119.99897 * 179.97438 * 22 21 19 43 43 H 1.08993 * 113.61700 * 270.88080 * 27 16 15 44 44 H 1.09006 * 113.69091 * 139.98696 * 27 16 15 45 45 H 1.09005 * 109.46710 * 84.44796 * 29 28 8 46 46 H 1.08993 * 109.47113 * 204.45071 * 29 28 8 47 47 H 1.08996 * 109.47076 * 324.45413 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1337 0.0000 4 7 3.4343 1.2071 -0.0005 5 6 4.0708 2.5266 0.0001 6 6 4.2110 0.1067 0.0048 7 8 5.4258 0.2077 0.0096 8 6 3.5935 -1.1755 -0.0007 9 6 4.3959 -2.4120 -0.0010 10 8 3.8486 -3.4921 0.1118 11 7 5.7367 -2.3452 -0.1208 12 6 6.5251 -3.5757 -0.2237 13 6 8.0084 -3.2220 -0.3484 14 1 8.1910 -2.4012 -1.0421 15 6 8.7181 -3.0560 1.0057 16 6 9.9180 -3.7840 0.3771 17 1 10.6237 -3.1163 -0.1173 18 7 10.5713 -4.7326 1.2825 19 6 11.7985 -4.4380 1.8136 20 1 12.2848 -3.5062 1.5655 21 6 12.4172 -5.3366 2.6719 22 7 11.8244 -6.4721 2.9747 23 14 14.0911 -4.9345 3.3970 24 1 14.5381 -3.6070 2.9039 25 1 13.9945 -4.9048 4.8786 26 1 15.0709 -5.9716 2.9856 27 6 8.9147 -4.4417 -0.5849 28 6 2.2008 -1.2164 -0.0001 29 6 1.4631 -2.5305 0.0007 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 3.3031 3.3003 0.0014 34 1 4.6919 2.6300 0.8899 35 1 4.6911 2.6312 -0.8901 36 1 6.1796 -1.4824 -0.1389 37 1 6.3704 -4.1821 0.6688 38 1 6.2098 -4.1368 -1.1033 39 1 8.9247 -2.0179 1.2661 40 1 8.2467 -3.6111 1.8167 41 1 10.1344 -5.5694 1.5057 42 1 12.2569 -7.1002 3.5742 43 1 8.4970 -5.3755 -0.2089 44 1 9.2788 -4.5229 -1.6092 45 1 1.3724 -2.8955 1.0238 46 1 0.4694 -2.3896 -0.4243 47 1 2.0141 -3.2569 -0.5966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086164052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:09 Heat of formation + Delta-G solvation = 27.931445 kcal Electronic energy + Delta-G solvation = -28439.156396 eV Core-core repulsion = 24431.632523 eV Total energy + Delta-G solvation = -4007.523874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.58961 -39.76064 -38.53910 -38.40603 -36.20968 -34.59793 -33.21942 -32.72194 -31.11922 -30.19157 -28.62531 -27.55675 -26.61709 -25.00034 -24.76374 -23.62312 -22.66817 -21.02998 -20.92434 -19.30490 -18.81331 -17.81331 -17.29604 -17.00806 -16.87475 -16.15829 -15.64063 -15.34930 -14.80119 -14.64552 -14.53241 -14.35650 -14.10641 -13.82302 -13.68504 -13.54652 -13.34043 -13.17238 -13.06377 -12.88492 -12.77331 -12.51057 -12.22368 -11.81170 -11.75766 -11.69642 -11.30584 -11.17041 -10.81194 -10.46775 -10.37666 -10.28093 -10.11322 -10.04994 -9.75875 -9.73590 -9.41348 -8.98545 -8.83271 -8.76414 -6.90939 -5.74078 -3.02399 -0.26203 1.08658 1.70149 2.41848 3.14274 3.24745 3.45320 3.46534 3.50857 3.53236 3.99614 4.21238 4.29094 4.62373 4.67651 4.71614 4.76715 4.93922 5.01609 5.05822 5.08739 5.10597 5.14967 5.20333 5.33846 5.36906 5.38606 5.47143 5.52199 5.63581 5.68213 5.89104 5.92957 5.98447 6.03550 6.15488 6.36729 6.40853 6.45666 6.59714 6.70497 6.92436 7.08038 7.19810 7.57234 7.70647 7.74135 8.25891 8.44704 9.55665 10.14665 10.49180 11.48504 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.002147 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.512655 B =13035.921037 C =13771.279301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.053 3.947 3 N -0.207 5.207 4 N -0.341 5.341 5 C 0.082 3.918 6 C 0.494 3.506 7 O -0.522 6.522 8 C -0.230 4.230 9 C 0.571 3.429 10 O -0.540 6.540 11 N -0.707 5.707 12 C 0.131 3.869 13 C -0.127 4.127 14 H 0.088 0.912 15 C -0.160 4.160 16 C 0.166 3.834 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.241 4.241 20 H 0.072 0.928 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.141 4.141 28 C 0.043 3.957 29 C -0.132 4.132 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.415 0.585 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.282 17.234 -9.478 33.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 N -0.033 5.033 4 N -0.160 5.160 5 C -0.057 4.057 6 C 0.293 3.707 7 O -0.400 6.400 8 C -0.244 4.244 9 C 0.357 3.643 10 O -0.419 6.419 11 N -0.366 5.366 12 C 0.007 3.993 13 C -0.146 4.146 14 H 0.106 0.894 15 C -0.201 4.201 16 C 0.054 3.946 17 H 0.093 0.907 18 N -0.351 5.351 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.181 4.181 28 C 0.035 3.965 29 C -0.188 4.188 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.259 0.741 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.721 17.579 -9.350 33.324 hybrid contribution 1.267 -0.284 0.603 1.432 sum -25.454 17.295 -8.747 31.993 Atomic orbital electron populations 1.20646 0.85672 1.04438 1.04039 1.21769 0.98238 0.86667 1.04964 1.70673 0.95094 1.29000 1.08502 1.46581 1.01963 1.10076 1.57401 1.22229 0.98751 0.79817 1.04937 1.17877 0.88114 0.84864 0.79846 1.90734 1.12109 1.85208 1.51931 1.21534 0.94346 0.93982 1.14581 1.17290 0.82597 0.86874 0.77526 1.90738 1.71421 1.28826 1.50958 1.46506 1.05923 1.12242 1.71922 1.21472 0.89973 0.85950 1.01868 1.22625 0.91844 0.99917 1.00214 0.89405 1.23922 0.99886 1.00937 0.95337 1.21524 0.90729 0.91883 0.90491 0.90683 1.42421 1.20002 1.20111 1.52548 1.19362 0.94567 1.02114 1.21161 0.91054 1.24772 0.98951 0.96735 1.00664 1.69675 1.38750 1.09775 1.39895 0.86114 0.83999 0.77358 0.78716 1.20552 1.21899 1.21883 1.23441 0.97380 0.96958 1.00313 1.21668 0.92452 0.97542 0.84797 1.21318 0.99710 0.92718 1.05073 0.89695 0.89918 0.89299 0.88037 0.89189 0.89218 0.74070 0.91070 0.91760 0.92752 0.90401 0.78079 0.93556 0.90099 0.92025 0.88554 0.90449 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.30 9.80 36.00 0.35 0.05 16 2 C 0.05 0.39 6.87 -82.48 -0.57 -0.18 16 3 N -0.21 -1.73 10.71 33.66 0.36 -1.37 16 4 N -0.34 -3.22 3.62 -69.82 -0.25 -3.47 16 5 C 0.08 0.50 10.21 59.85 0.61 1.12 16 6 C 0.49 6.06 7.50 -14.73 -0.11 5.95 16 7 O -0.52 -7.42 13.87 5.01 0.07 -7.35 16 8 C -0.23 -2.83 5.95 -104.19 -0.62 -3.45 16 9 C 0.57 8.44 7.71 -12.53 -0.10 8.34 16 10 O -0.54 -8.70 13.61 5.27 0.07 -8.62 16 11 N -0.71 -10.58 5.48 -61.39 -0.34 -10.91 16 12 C 0.13 1.98 5.52 -4.04 -0.02 1.96 16 13 C -0.13 -1.96 3.75 -89.81 -0.34 -2.30 16 14 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.16 -2.96 7.43 -25.92 -0.19 -3.15 16 16 C 0.17 3.42 4.48 -67.12 -0.30 3.12 16 17 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 18 N -0.71 -18.47 5.40 -52.64 -0.28 -18.75 16 19 C -0.24 -6.86 9.97 -15.06 -0.15 -7.01 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 23 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 C -0.14 -2.42 7.39 -25.92 -0.19 -2.61 16 28 C 0.04 0.40 5.99 -103.54 -0.62 -0.22 16 29 C -0.13 -0.99 8.61 36.01 0.31 -0.68 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.16 5.99 -51.93 -0.31 -0.15 16 33 H 0.10 0.37 8.04 -51.93 -0.42 -0.04 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.42 6.24 5.22 -40.82 -0.21 6.03 16 37 H 0.07 1.17 7.84 -51.93 -0.41 0.77 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.56 7.89 -51.93 -0.41 1.15 16 41 H 0.39 10.56 7.92 -40.82 -0.32 10.24 16 42 H 0.25 7.57 8.31 -40.82 -0.34 7.24 16 43 H 0.08 1.42 8.08 -51.93 -0.42 1.01 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.32 5.88 -51.93 -0.31 0.01 16 47 H 0.11 1.08 5.96 -51.93 -0.31 0.77 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -34.90 383.66 -7.81 -42.71 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.89 Total: 11.84 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.03 Total: 0.39 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.21 Total: -62.57 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.14 Total: -15.98 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.90 -7.81 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086164052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.641 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds