Wall clock time and date at job start Tue Mar 31 2020 19:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30524 * 119.70585 * 2 1 4 4 N 1.28265 * 122.98472 * 180.02562 * 3 2 1 5 5 C 1.46504 * 119.03051 * 180.02562 * 4 3 2 6 6 C 1.34682 * 121.93656 * 359.70629 * 4 3 2 7 7 O 1.21903 * 120.46754 * 180.29382 * 6 4 3 8 8 C 1.42320 * 119.06814 * 0.54766 * 6 4 3 9 9 C 1.47410 * 121.30297 * 179.73993 * 8 6 4 10 10 O 1.21609 * 119.99923 * 173.58722 * 9 8 6 11 11 N 1.34778 * 119.99836 * 353.86275 * 9 8 6 12 12 C 1.46498 * 119.99506 * 184.65430 * 11 9 8 13 13 C 1.53003 * 109.46835 * 180.02562 * 12 11 9 14 14 H 1.09006 * 112.84953 * 316.19197 * 13 12 11 15 15 C 1.53776 * 113.61665 * 87.49895 * 13 12 11 16 16 C 1.53781 * 87.08087 * 139.98118 * 15 13 12 17 17 H 1.09002 * 113.61676 * 89.11705 * 16 15 13 18 18 N 1.46501 * 113.69267 * 220.00580 * 16 15 13 19 19 C 1.36935 * 120.00265 * 252.53414 * 18 16 15 20 20 H 1.07996 * 120.00256 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99869 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00185 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46961 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47218 * 120.00031 * 23 21 19 26 26 H 1.48497 * 109.47197 * 240.00112 * 23 21 19 27 27 C 1.53780 * 87.08160 * 334.56695 * 16 15 13 28 28 C 1.39323 * 117.39564 * 359.47410 * 8 6 4 29 29 C 1.50703 * 120.99016 * 180.28798 * 28 8 6 30 30 H 1.09005 * 109.46727 * 270.02079 * 1 2 3 31 31 H 1.09004 * 109.47071 * 30.01463 * 1 2 3 32 32 H 1.08990 * 109.47633 * 150.01992 * 1 2 3 33 33 H 1.08995 * 109.47235 * 0.02562 * 5 4 3 34 34 H 1.08998 * 109.47242 * 120.00231 * 5 4 3 35 35 H 1.09003 * 109.46974 * 240.00008 * 5 4 3 36 36 H 0.96995 * 119.99762 * 4.65036 * 11 9 8 37 37 H 1.09002 * 109.47293 * 299.99324 * 12 11 9 38 38 H 1.08994 * 109.47500 * 59.99958 * 12 11 9 39 39 H 1.08997 * 113.61569 * 254.53083 * 15 13 12 40 40 H 1.08998 * 113.61434 * 25.43674 * 15 13 12 41 41 H 0.97006 * 119.99836 * 72.53784 * 18 16 15 42 42 H 0.97000 * 119.99897 * 179.97438 * 22 21 19 43 43 H 1.08993 * 113.61700 * 270.88080 * 27 16 15 44 44 H 1.09006 * 113.69091 * 139.98696 * 27 16 15 45 45 H 1.09005 * 109.46710 * 84.44796 * 29 28 8 46 46 H 1.08993 * 109.47113 * 204.45071 * 29 28 8 47 47 H 1.08996 * 109.47076 * 324.45413 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1337 0.0000 4 7 3.4343 1.2071 -0.0005 5 6 4.0708 2.5266 0.0001 6 6 4.2110 0.1067 0.0048 7 8 5.4258 0.2077 0.0096 8 6 3.5935 -1.1755 -0.0007 9 6 4.3959 -2.4120 -0.0010 10 8 3.8486 -3.4921 0.1118 11 7 5.7367 -2.3452 -0.1208 12 6 6.5251 -3.5757 -0.2237 13 6 8.0084 -3.2220 -0.3484 14 1 8.1910 -2.4012 -1.0421 15 6 8.7181 -3.0560 1.0057 16 6 9.9180 -3.7840 0.3771 17 1 10.6237 -3.1163 -0.1173 18 7 10.5713 -4.7326 1.2825 19 6 11.7985 -4.4380 1.8136 20 1 12.2848 -3.5062 1.5655 21 6 12.4172 -5.3366 2.6719 22 7 11.8244 -6.4721 2.9747 23 14 14.0911 -4.9345 3.3970 24 1 14.5381 -3.6070 2.9039 25 1 13.9945 -4.9048 4.8786 26 1 15.0709 -5.9716 2.9856 27 6 8.9147 -4.4417 -0.5849 28 6 2.2008 -1.2164 -0.0001 29 6 1.4631 -2.5305 0.0007 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 3.3031 3.3003 0.0014 34 1 4.6919 2.6300 0.8899 35 1 4.6911 2.6312 -0.8901 36 1 6.1796 -1.4824 -0.1389 37 1 6.3704 -4.1821 0.6688 38 1 6.2098 -4.1368 -1.1033 39 1 8.9247 -2.0179 1.2661 40 1 8.2467 -3.6111 1.8167 41 1 10.1344 -5.5694 1.5057 42 1 12.2569 -7.1002 3.5742 43 1 8.4970 -5.3755 -0.2089 44 1 9.2788 -4.5229 -1.6092 45 1 1.3724 -2.8955 1.0238 46 1 0.4694 -2.3896 -0.4243 47 1 2.0141 -3.2569 -0.5966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086164052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:08 Heat of formation + Delta-G solvation = 3.132402 kcal Electronic energy + Delta-G solvation = -28440.231763 eV Core-core repulsion = 24431.632523 eV Total energy + Delta-G solvation = -4008.599241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.33831 -40.89834 -39.84680 -39.36304 -36.95285 -36.05614 -35.01405 -33.44919 -32.28425 -31.60003 -29.37296 -28.67751 -27.31421 -26.50608 -26.08193 -25.14031 -23.37749 -22.47064 -22.04013 -20.65040 -19.87720 -19.07245 -18.61935 -18.02664 -17.78317 -17.14121 -16.91185 -16.53365 -16.41705 -16.00573 -15.58217 -15.15307 -15.11604 -14.95691 -14.90760 -14.67329 -14.30111 -14.14052 -13.76334 -13.70872 -13.45985 -13.39970 -13.28285 -13.05847 -12.97162 -12.94265 -12.69117 -12.60150 -12.48807 -12.18723 -12.08407 -11.62164 -11.57365 -11.27642 -11.08383 -11.02363 -10.86781 -10.71737 -10.07626 -9.63634 -9.00321 -7.96201 -5.24869 -1.04664 0.34687 1.04160 1.45500 1.46679 1.49009 1.56855 2.11505 2.32723 2.55052 2.77594 3.25665 3.35004 3.45645 3.60148 3.69059 3.70793 3.88080 4.02421 4.20673 4.26042 4.29139 4.30623 4.32591 4.39092 4.45777 4.52391 4.63414 4.66353 4.68646 4.76353 4.81123 4.92455 4.92831 4.93318 4.98858 5.08545 5.15448 5.22512 5.33224 5.40150 5.48539 5.53066 5.67462 6.23321 6.26133 6.54487 6.90084 7.14783 7.31483 8.08547 8.31803 9.27460 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.002147 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.512655 B =13035.921037 C =13771.279301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.057 3.943 3 N -0.205 5.205 4 N -0.340 5.340 5 C 0.076 3.924 6 C 0.486 3.514 7 O -0.555 6.555 8 C -0.270 4.270 9 C 0.566 3.434 10 O -0.562 6.562 11 N -0.711 5.711 12 C 0.136 3.864 13 C -0.101 4.101 14 H 0.109 0.891 15 C -0.155 4.155 16 C 0.147 3.853 17 H 0.079 0.921 18 N -0.728 5.728 19 C -0.243 4.243 20 H 0.077 0.923 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.975 3.025 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.292 1.292 27 C -0.129 4.129 28 C 0.064 3.936 29 C -0.132 4.132 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.415 0.585 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.119 0.881 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.460 19.258 -10.495 36.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 N -0.031 5.031 4 N -0.158 5.158 5 C -0.063 4.063 6 C 0.286 3.714 7 O -0.436 6.436 8 C -0.285 4.285 9 C 0.354 3.646 10 O -0.443 6.443 11 N -0.370 5.370 12 C 0.013 3.987 13 C -0.120 4.120 14 H 0.127 0.873 15 C -0.196 4.196 16 C 0.037 3.963 17 H 0.097 0.903 18 N -0.366 5.366 19 C -0.375 4.375 20 H 0.095 0.905 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.804 3.196 24 H -0.189 1.189 25 H -0.222 1.222 26 H -0.219 1.219 27 C -0.169 4.169 28 C 0.056 3.944 29 C -0.187 4.187 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.147 0.853 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.260 0.740 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.117 0.883 46 H 0.137 0.863 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -28.941 19.682 -10.405 36.513 hybrid contribution 1.748 -0.842 0.887 2.133 sum -27.193 18.840 -9.518 34.424 Atomic orbital electron populations 1.20878 0.82277 1.06089 1.05534 1.22469 1.00088 0.85463 1.03166 1.70819 0.94356 1.29334 1.08554 1.46753 1.02272 1.10332 1.56472 1.22484 0.99684 0.78991 1.05113 1.17944 0.87955 0.85594 0.79916 1.90687 1.13252 1.85692 1.53968 1.21405 0.95520 0.93128 1.18397 1.17683 0.82535 0.87640 0.76740 1.90719 1.71725 1.29863 1.52024 1.46533 1.06281 1.11894 1.72304 1.21313 0.89789 0.86191 1.01418 1.22454 0.91647 0.99587 0.98277 0.87330 1.23737 0.99179 1.00319 0.96347 1.21899 0.91462 0.91963 0.90969 0.90251 1.42612 1.19697 1.20605 1.53637 1.19763 0.95326 1.01971 1.20420 0.90469 1.25622 1.02852 0.96915 1.01837 1.69834 1.40418 1.10903 1.41036 0.85046 0.79516 0.77626 0.77420 1.18938 1.22183 1.21907 1.23291 0.96196 0.97013 1.00366 1.22035 0.91421 0.99186 0.81798 1.21386 1.01254 0.91103 1.04999 0.88102 0.88662 0.87268 0.85313 0.89292 0.88856 0.74049 0.92920 0.90814 0.92497 0.92412 0.79504 0.94039 0.90841 0.89937 0.88269 0.86254 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.22 9.80 71.23 0.70 0.48 16 2 C 0.06 0.68 6.87 43.19 0.30 0.98 16 3 N -0.20 -2.96 10.71 -47.43 -0.51 -3.47 16 4 N -0.34 -6.04 3.62 -493.00 -1.78 -7.83 16 5 C 0.08 0.84 10.21 127.77 1.30 2.14 16 6 C 0.49 11.92 7.50 85.27 0.64 12.56 16 7 O -0.55 -16.14 13.87 -5.00 -0.07 -16.21 16 8 C -0.27 -6.64 5.95 -19.59 -0.12 -6.76 16 9 C 0.57 17.09 7.71 86.66 0.67 17.76 16 10 O -0.56 -18.51 13.61 -4.06 -0.06 -18.56 16 11 N -0.71 -21.66 5.48 -466.39 -2.56 -24.21 16 12 C 0.14 4.17 5.52 86.38 0.48 4.64 16 13 C -0.10 -3.05 3.75 -10.27 -0.04 -3.09 16 14 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 15 C -0.16 -5.81 7.43 31.12 0.23 -5.58 16 16 C 0.15 6.06 4.48 45.52 0.20 6.26 16 17 H 0.08 3.20 8.10 -2.39 -0.02 3.18 16 18 N -0.73 -38.49 5.40 -320.45 -1.73 -40.23 16 19 C -0.24 -13.98 9.97 84.03 0.84 -13.14 16 20 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 22 N -0.97 -61.40 13.06 21.65 0.28 -61.12 16 23 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 C -0.13 -4.34 7.39 31.12 0.23 -4.11 16 28 C 0.06 1.08 5.99 -19.17 -0.11 0.96 16 29 C -0.13 -1.71 8.61 71.24 0.61 -1.10 16 30 H 0.10 0.03 8.14 -2.38 -0.02 0.01 16 31 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.11 -0.15 5.99 -2.39 -0.01 -0.16 16 33 H 0.13 0.65 8.04 -2.39 -0.02 0.63 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.41 12.71 5.22 -92.71 -0.48 12.23 16 37 H 0.05 1.80 7.84 -2.39 -0.02 1.78 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.40 7.89 -2.39 -0.02 2.38 16 41 H 0.37 21.18 7.92 -92.70 -0.73 20.44 16 42 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 44 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.12 0.50 5.88 -2.39 -0.01 0.49 16 47 H 0.08 1.62 5.96 -2.39 -0.01 1.61 16 Total: -1.00 -77.93 383.66 1.80 -76.14 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: -0.20 Total: 38.25 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.40 Total: 7.69 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -6.30 Total: -136.85 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.12 Total: -34.77 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -77.93 1.80 -76.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086164052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.268 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds