Wall clock time and date at job start Tue Mar 31 2020 19:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30523 * 119.69995 * 2 1 4 4 N 1.28276 * 122.98271 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.03021 * 180.02562 * 4 3 2 6 6 C 1.34681 * 121.93310 * 359.72467 * 4 3 2 7 7 O 1.21904 * 120.46878 * 180.29168 * 6 4 3 8 8 C 1.42321 * 119.06533 * 0.53065 * 6 4 3 9 9 C 1.47419 * 121.29832 * 179.76040 * 8 6 4 10 10 O 1.21605 * 120.00033 * 184.32648 * 9 8 6 11 11 N 1.34775 * 120.00123 * 4.33628 * 9 8 6 12 12 C 1.46496 * 120.00255 * 174.94616 * 11 9 8 13 13 C 1.52994 * 109.47340 * 180.27321 * 12 11 9 14 14 H 1.09001 * 112.84919 * 45.33413 * 13 12 11 15 15 C 1.53788 * 113.61489 * 176.52813 * 13 12 11 16 16 C 1.53782 * 87.07881 * 139.97999 * 15 13 12 17 17 H 1.08997 * 113.61460 * 220.01762 * 16 15 13 18 18 N 1.46510 * 113.61255 * 89.11938 * 16 15 13 19 19 C 1.36936 * 119.99825 * 154.99779 * 18 16 15 20 20 H 1.08000 * 120.00082 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99904 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99791 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46903 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46901 * 120.00060 * 23 21 19 26 26 H 1.48494 * 109.47195 * 239.99859 * 23 21 19 27 27 C 1.53784 * 113.61586 * 274.13631 * 13 12 11 28 28 C 1.39312 * 117.40197 * 359.49304 * 8 6 4 29 29 C 1.50700 * 120.99281 * 180.22866 * 28 8 6 30 30 H 1.09006 * 109.46556 * 270.01772 * 1 2 3 31 31 H 1.09002 * 109.46996 * 30.01390 * 1 2 3 32 32 H 1.08998 * 109.47290 * 150.02304 * 1 2 3 33 33 H 1.08998 * 109.47355 * 0.02562 * 5 4 3 34 34 H 1.09001 * 109.46626 * 120.00457 * 5 4 3 35 35 H 1.08997 * 109.46781 * 239.99802 * 5 4 3 36 36 H 0.97000 * 119.99823 * 355.21631 * 11 9 8 37 37 H 1.09004 * 109.46840 * 300.27168 * 12 11 9 38 38 H 1.09000 * 109.47056 * 60.26850 * 12 11 9 39 39 H 1.09000 * 113.61500 * 254.52937 * 15 13 12 40 40 H 1.09002 * 113.61336 * 25.43490 * 15 13 12 41 41 H 0.96999 * 119.99589 * 334.99019 * 18 16 15 42 42 H 0.96996 * 119.99887 * 179.97438 * 22 21 19 43 43 H 1.09000 * 113.61043 * 334.56649 * 27 13 12 44 44 H 1.09001 * 113.61090 * 105.46953 * 27 13 12 45 45 H 1.08997 * 109.47619 * 84.21544 * 29 28 8 46 46 H 1.08999 * 109.47172 * 204.21905 * 29 28 8 47 47 H 1.09004 * 109.46985 * 324.21493 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1538 1.1338 0.0000 4 7 3.4344 1.2072 0.0005 5 6 4.0708 2.5268 0.0010 6 6 4.2111 0.1069 0.0065 7 8 5.4259 0.2078 0.0122 8 6 3.5935 -1.1753 0.0010 9 6 4.3961 -2.4119 0.0020 10 8 3.8466 -3.4935 -0.0822 11 7 5.7388 -2.3438 0.0964 12 6 6.5285 -3.5725 0.2089 13 6 8.0133 -3.2172 0.3076 14 1 8.2082 -2.4026 1.0052 15 6 8.9262 -4.4374 0.5148 16 6 9.9092 -3.7688 -0.4607 17 1 10.3819 -4.4672 -1.1513 18 7 10.8691 -2.8759 0.1933 19 6 12.0773 -2.6185 -0.3977 20 1 12.3227 -3.0740 -1.3456 21 6 12.9865 -1.7720 0.2217 22 7 12.6871 -1.2164 1.3767 23 14 14.6349 -1.4214 -0.5841 24 1 14.7258 -2.1621 -1.8679 25 1 14.7590 0.0354 -0.8438 26 1 15.7300 -1.8582 0.3187 27 6 8.6953 -3.0347 -1.0587 28 6 2.2010 -1.2163 0.0005 29 6 1.4633 -2.5304 0.0000 30 1 -0.3633 0.0003 1.0278 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 3.3031 3.3005 0.0014 34 1 4.6912 2.6305 0.8912 35 1 4.6918 2.6310 -0.8887 36 1 6.1820 -1.4809 0.0937 37 1 6.2254 -4.1186 1.1022 38 1 6.3612 -4.1938 -0.6710 39 1 9.3118 -4.5267 1.5304 40 1 8.5028 -5.3685 0.1383 41 1 10.6487 -2.4669 1.0448 42 1 13.3226 -0.6252 1.8097 43 1 8.2085 -3.5817 -1.8661 44 1 8.8946 -1.9933 -1.3114 45 1 1.3753 -2.8982 1.0223 46 1 0.4684 -2.3884 -0.4219 47 1 2.0127 -3.2552 -0.6009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086443897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:12 Heat of formation + Delta-G solvation = 30.177656 kcal Electronic energy + Delta-G solvation = -28694.598377 eV Core-core repulsion = 24687.171906 eV Total energy + Delta-G solvation = -4007.426471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51672 -39.72915 -38.46922 -38.43514 -36.14760 -34.56415 -33.13116 -32.65810 -31.05468 -30.09173 -28.56954 -27.51645 -26.55723 -24.98160 -24.70625 -23.51963 -22.60768 -21.58451 -20.92476 -19.12156 -18.31686 -17.75979 -17.22229 -17.21473 -16.74721 -16.10090 -15.54023 -15.26053 -14.83164 -14.55583 -14.42027 -14.24090 -14.10486 -13.72339 -13.67779 -13.62569 -13.27160 -13.09384 -12.97068 -12.88570 -12.77831 -12.44182 -12.18154 -12.15213 -11.83638 -11.67389 -11.31562 -10.98914 -10.82218 -10.43500 -10.30020 -10.18750 -10.09992 -9.96090 -9.64317 -9.62835 -9.38729 -8.93914 -8.84318 -8.71367 -6.94616 -5.76191 -3.04897 -0.20446 1.16151 1.78126 2.47351 3.19442 3.30926 3.44322 3.49878 3.52291 3.52836 4.05589 4.26977 4.34974 4.59627 4.76092 4.77349 4.87900 4.99118 5.06211 5.12652 5.15886 5.19742 5.21571 5.26026 5.34085 5.38456 5.43913 5.50362 5.51799 5.73224 5.73991 5.78612 5.92736 6.00748 6.06778 6.19766 6.28637 6.44690 6.58196 6.68656 6.84735 6.98581 7.13247 7.16571 7.63879 7.73538 7.77085 8.30366 8.43009 9.53498 10.12009 10.46296 11.46445 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.002475 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.325837 B =11309.192930 C =12674.475437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.050 3.950 3 N -0.205 5.205 4 N -0.340 5.340 5 C 0.082 3.918 6 C 0.492 3.508 7 O -0.516 6.516 8 C -0.230 4.230 9 C 0.573 3.427 10 O -0.544 6.544 11 N -0.706 5.706 12 C 0.129 3.871 13 C -0.119 4.119 14 H 0.092 0.908 15 C -0.147 4.147 16 C 0.168 3.832 17 H 0.062 0.938 18 N -0.706 5.706 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.015 4.015 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.168 4.168 28 C 0.044 3.956 29 C -0.138 4.138 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.417 0.583 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.234 3.374 -2.201 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 N -0.031 5.031 4 N -0.160 5.160 5 C -0.058 4.058 6 C 0.291 3.709 7 O -0.394 6.394 8 C -0.245 4.245 9 C 0.359 3.641 10 O -0.425 6.425 11 N -0.364 5.364 12 C 0.006 3.994 13 C -0.138 4.138 14 H 0.111 0.889 15 C -0.186 4.186 16 C 0.056 3.944 17 H 0.080 0.920 18 N -0.344 5.344 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.209 4.209 28 C 0.036 3.964 29 C -0.194 4.194 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.262 0.738 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.111 0.889 46 H 0.095 0.905 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -28.679 3.693 -2.343 29.011 hybrid contribution 1.305 0.298 -0.023 1.339 sum -27.374 3.991 -2.366 27.765 Atomic orbital electron populations 1.20635 0.85738 1.04397 1.03938 1.21758 0.98203 0.86710 1.05283 1.70665 0.95162 1.29003 1.08293 1.46604 1.01914 1.10140 1.57323 1.22249 0.98736 0.79705 1.05123 1.17904 0.88170 0.84884 0.79965 1.90773 1.12023 1.85102 1.51473 1.21504 0.94337 0.93976 1.14714 1.17298 0.82586 0.86882 0.77330 1.90680 1.71365 1.28719 1.51724 1.46562 1.05761 1.12542 1.71564 1.21508 0.90417 0.86025 1.01426 1.22693 0.91035 0.99966 1.00092 0.88928 1.23439 0.97581 0.96222 1.01407 1.21092 0.88323 0.91735 0.93297 0.91953 1.42186 1.14814 1.53210 1.24223 1.19343 0.92185 1.22546 1.03000 0.90943 1.24771 0.98864 1.00183 0.97228 1.69679 1.36036 1.35393 1.16959 0.86094 0.83966 0.77637 0.78370 1.20507 1.21887 1.21861 1.23906 0.99986 1.02209 0.94817 1.21647 0.92411 0.97498 0.84858 1.21405 0.99937 0.93093 1.04989 0.89788 0.89948 0.89358 0.88051 0.89098 0.89113 0.73778 0.91840 0.91457 0.91337 0.90452 0.78095 0.93538 0.91485 0.91496 0.88903 0.90455 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 9.80 36.01 0.35 0.01 16 2 C 0.05 0.40 6.87 -82.47 -0.57 -0.17 16 3 N -0.21 -1.89 10.71 33.66 0.36 -1.53 16 4 N -0.34 -3.61 3.62 -69.82 -0.25 -3.86 16 5 C 0.08 0.62 10.21 59.85 0.61 1.23 16 6 C 0.49 6.65 7.50 -14.73 -0.11 6.53 16 7 O -0.52 -8.29 13.86 5.01 0.07 -8.22 16 8 C -0.23 -3.01 5.95 -104.19 -0.62 -3.63 16 9 C 0.57 8.73 7.74 -12.52 -0.10 8.63 16 10 O -0.54 -8.72 13.49 5.27 0.07 -8.65 16 11 N -0.71 -11.21 5.48 -61.39 -0.34 -11.55 16 12 C 0.13 1.99 5.50 -4.05 -0.02 1.97 16 13 C -0.12 -2.03 3.62 -89.81 -0.33 -2.35 16 14 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 15 C -0.15 -2.52 7.39 -25.91 -0.19 -2.71 16 16 C 0.17 3.47 4.57 -67.02 -0.31 3.16 16 17 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 18 N -0.71 -18.18 5.31 -52.54 -0.28 -18.46 16 19 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 23 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 C -0.17 -3.11 7.44 -25.83 -0.19 -3.31 16 28 C 0.04 0.42 5.98 -103.55 -0.62 -0.20 16 29 C -0.14 -1.07 8.78 36.01 0.32 -0.75 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.20 5.99 -51.93 -0.31 -0.11 16 33 H 0.10 0.50 8.05 -51.93 -0.42 0.08 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.42 7.03 5.20 -40.82 -0.21 6.81 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 41 H 0.39 10.52 7.90 -40.82 -0.32 10.19 16 42 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.34 5.87 -51.93 -0.31 0.04 16 47 H 0.12 1.19 5.68 -51.93 -0.29 0.90 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -34.55 383.33 -7.78 -42.34 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -6.88 Total: 13.38 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.02 Total: 0.96 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.22 Total: -63.31 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.14 Total: -16.87 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.55 -7.78 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086443897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.513 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds