Wall clock time and date at job start Tue Mar 31 2020 19:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32139 * 119.90217 * 2 1 4 4 C 1.32076 * 120.07362 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.06803 * 180.02562 * 4 3 2 6 6 C 1.39447 * 119.87287 * 0.02562 * 4 3 2 7 7 C 1.48143 * 120.09833 * 180.02562 * 6 4 3 8 8 O 1.21512 * 120.00085 * 354.13683 * 7 6 4 9 9 N 1.34783 * 120.00198 * 174.14549 * 7 6 4 10 10 C 1.46491 * 120.00289 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46187 * 35.02121 * 10 9 7 12 12 C 1.53050 * 109.44743 * 275.05778 * 10 9 7 13 13 C 1.53195 * 109.31265 * 178.62144 * 12 10 9 14 14 N 1.46928 * 108.77620 * 54.63517 * 13 12 10 15 15 C 1.36934 * 120.62899 * 126.41448 * 14 13 12 16 16 H 1.08004 * 119.99680 * 208.11342 * 15 14 13 17 17 C 1.38810 * 120.00370 * 28.11148 * 15 14 13 18 18 N 1.31623 * 119.99615 * 15.69144 * 17 15 14 19 19 Si 1.86795 * 120.00090 * 195.69142 * 17 15 14 20 20 H 1.48507 * 109.47081 * 90.00014 * 19 17 15 21 21 H 1.48501 * 109.47032 * 209.99679 * 19 17 15 22 22 H 1.48498 * 109.47472 * 330.00083 * 19 17 15 23 23 C 1.46934 * 118.73642 * 306.39268 * 14 13 12 24 24 C 1.53039 * 109.46186 * 154.99801 * 10 9 7 25 25 H 1.08994 * 109.50193 * 61.42046 * 24 10 9 26 26 O 1.42897 * 109.49591 * 301.32196 * 24 10 9 27 27 N 1.33005 * 119.80072 * 0.26979 * 6 4 3 28 28 C 1.31795 * 119.93100 * 359.45430 * 27 6 4 29 29 C 1.50702 * 119.93947 * 180.27692 * 28 27 6 30 30 H 1.08995 * 109.47258 * 90.00186 * 1 2 3 31 31 H 1.09001 * 109.47282 * 210.00507 * 1 2 3 32 32 H 1.09005 * 109.47006 * 329.99992 * 1 2 3 33 33 H 1.09003 * 109.47709 * 263.23673 * 5 4 3 34 34 H 1.08995 * 109.47015 * 23.23376 * 5 4 3 35 35 H 1.08998 * 109.47603 * 143.23558 * 5 4 3 36 36 H 0.97007 * 119.99535 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.49428 * 298.57412 * 12 10 9 38 38 H 1.09000 * 109.49471 * 58.67094 * 12 10 9 39 39 H 1.08996 * 109.58441 * 174.42082 * 13 12 10 40 40 H 1.09001 * 109.58418 * 294.70202 * 13 12 10 41 41 H 0.97004 * 119.99339 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.58261 * 293.82073 * 23 14 13 43 43 H 1.08999 * 109.58051 * 173.39832 * 23 14 13 44 44 H 0.96698 * 113.99894 * 180.16494 * 26 24 10 45 45 H 1.09007 * 109.46627 * 270.27668 * 29 28 27 46 46 H 1.08993 * 109.47215 * 30.27221 * 29 28 27 47 47 H 1.08997 * 109.47272 * 150.27896 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2376 2.4558 0.0001 6 6 4.1847 -0.0577 -0.0016 7 6 5.6661 -0.0591 -0.0016 8 8 6.2746 0.9873 -0.1082 9 7 6.3389 -1.2210 0.1164 10 6 7.8039 -1.2224 0.1159 11 1 8.1681 -0.3257 0.6172 12 6 8.3128 -1.2420 -1.3274 13 6 9.8444 -1.2087 -1.3250 14 7 10.3402 -2.3153 -0.4952 15 6 11.2475 -3.2105 -0.9958 16 1 11.2750 -4.2211 -0.6157 17 6 12.1317 -2.8192 -1.9916 18 7 12.3187 -1.5403 -2.2403 19 14 13.0564 -4.1076 -2.9787 20 1 12.2605 -4.4789 -4.1763 21 1 14.3672 -3.5565 -3.4069 22 1 13.2764 -5.3117 -2.1378 23 6 9.8443 -2.4427 0.8821 24 6 8.3128 -2.4621 0.8549 25 1 7.9695 -3.3593 0.3399 26 8 7.8120 -2.4586 2.1932 27 7 3.5165 -1.2077 -0.0075 28 6 2.1986 -1.2026 -0.0015 29 6 1.4414 -2.5056 -0.0019 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 4.5233 2.7113 -1.0204 34 1 3.6002 3.2412 0.4062 35 1 5.1326 2.3601 0.6147 36 1 5.8531 -2.0562 0.2017 37 1 7.9694 -2.1507 -1.8219 38 1 7.9308 -0.3709 -1.8597 39 1 10.2139 -1.3222 -2.3441 40 1 10.1886 -0.2591 -0.9151 41 1 12.9364 -1.2669 -2.9365 42 1 10.1886 -1.5947 1.4742 43 1 10.2140 -3.3703 1.3191 44 1 8.0974 -3.2162 2.7220 45 1 1.2585 -2.8191 -1.0298 46 1 2.0285 -3.2672 0.5111 47 1 0.4896 -2.3729 0.5123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090417159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:40 Heat of formation + Delta-G solvation = -18.290235 kcal Electronic energy + Delta-G solvation = -29322.995631 eV Core-core repulsion = 25313.467435 eV Total energy + Delta-G solvation = -4009.528196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.67133 -39.60909 -37.96757 -35.41765 -35.36128 -34.53619 -34.26024 -31.94991 -30.43578 -30.08054 -29.16920 -28.48471 -26.50805 -25.04687 -23.82814 -22.68145 -22.27509 -21.61063 -20.45402 -19.56263 -18.47888 -17.58500 -16.96767 -16.48109 -16.06576 -15.74279 -15.42375 -14.97423 -14.64510 -14.57579 -13.93961 -13.86756 -13.67711 -13.54532 -13.41207 -13.33736 -13.10070 -12.91164 -12.77475 -12.45904 -12.37090 -12.28386 -12.16451 -12.00904 -11.76404 -11.56699 -11.11477 -11.00727 -10.89590 -10.66793 -10.34783 -10.25547 -10.02718 -9.93707 -9.75404 -9.55958 -9.17874 -9.15729 -8.72225 -8.45476 -6.77916 -5.85309 -3.30744 0.21325 0.80511 2.70673 3.12033 3.34313 3.40855 3.42319 3.55724 3.70538 3.73293 4.11195 4.34856 4.39322 4.52019 4.65910 4.85769 4.94517 5.05247 5.13030 5.23871 5.28860 5.32269 5.36701 5.46905 5.49282 5.55189 5.60123 5.66150 5.76632 5.77366 5.96371 5.97819 6.09276 6.23150 6.37661 6.47713 6.51622 6.65653 6.76365 6.82962 6.96173 7.28875 7.42645 7.61298 7.72178 7.73543 7.92183 8.31600 8.37446 9.12641 9.74502 10.30323 11.23071 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002659 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.446452 B =10527.359720 C =10809.713644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.103 3.897 3 N -0.444 5.444 4 C 0.138 3.862 5 C -0.106 4.106 6 C 0.029 3.971 7 C 0.572 3.428 8 O -0.525 6.525 9 N -0.692 5.692 10 C 0.161 3.839 11 H 0.090 0.910 12 C -0.147 4.147 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.259 4.259 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.900 5.900 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.057 0.943 26 O -0.571 6.571 27 N -0.406 5.406 28 C 0.066 3.934 29 C -0.102 4.102 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.405 0.595 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.025 0.975 41 H 0.256 0.744 42 H 0.030 0.970 43 H 0.060 0.940 44 H 0.374 0.626 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.160 0.130 5.433 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.039 4.039 3 N -0.160 5.160 4 C -0.002 4.002 5 C -0.163 4.163 6 C -0.113 4.113 7 C 0.356 3.644 8 O -0.402 6.402 9 N -0.341 5.341 10 C 0.058 3.942 11 H 0.109 0.891 12 C -0.187 4.187 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.388 4.388 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.544 5.544 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.006 4.006 24 C 0.019 3.981 25 H 0.075 0.925 26 O -0.375 6.375 27 N -0.123 5.123 28 C -0.077 4.077 29 C -0.159 4.159 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.241 0.759 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.220 0.780 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.781 1.515 5.037 23.380 hybrid contribution 0.514 -1.609 -0.392 1.734 sum -22.267 -0.094 4.645 22.747 Atomic orbital electron populations 1.20830 0.87484 1.04226 1.03768 1.22400 0.98528 0.88974 0.94045 1.68306 1.07904 1.28791 1.10962 1.22374 0.89665 0.96793 0.91354 1.21062 1.00038 0.90406 1.04780 1.22082 0.96032 0.90058 1.03084 1.17543 0.84668 0.84593 0.77632 1.90751 1.68311 1.30883 1.50234 1.45958 1.07851 1.08858 1.71392 1.21110 0.77270 0.98787 0.97062 0.89148 1.22627 1.01056 1.01328 0.93711 1.20848 0.86404 0.89723 0.98518 1.44045 1.48610 1.31811 1.06754 1.19175 1.09981 0.91098 1.18534 0.91513 1.25093 0.97134 0.95830 1.01395 1.70020 1.37586 1.13529 1.33241 0.86243 0.78989 0.80859 0.80354 1.21355 1.21661 1.20406 1.21532 0.90193 0.99897 0.89012 1.22774 0.96587 0.96828 0.81905 0.92520 1.86484 1.75716 1.50628 1.24686 1.68153 1.08526 1.28729 1.06906 1.22098 0.90105 0.96900 0.98629 1.20767 0.99245 0.92244 1.03661 0.89566 0.89627 0.89949 0.89406 0.91126 0.87272 0.75942 0.92287 0.91855 0.88681 0.95736 0.93418 0.95241 0.92111 0.77970 0.89845 0.89937 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 9.78 36.01 0.35 -0.27 16 2 C 0.10 1.07 6.79 -82.28 -0.56 0.51 16 3 N -0.44 -5.66 10.34 -5.24 -0.05 -5.71 16 4 C 0.14 1.92 6.82 -82.04 -0.56 1.36 16 5 C -0.11 -1.33 8.88 36.00 0.32 -1.01 16 6 C 0.03 0.43 6.75 -82.84 -0.56 -0.13 16 7 C 0.57 9.57 7.71 -12.19 -0.09 9.47 16 8 O -0.52 -9.73 13.00 5.36 0.07 -9.66 16 9 N -0.69 -11.28 4.91 -54.62 -0.27 -11.55 16 10 C 0.16 2.95 2.12 -67.89 -0.14 2.81 16 11 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 12 C -0.15 -2.92 5.65 -26.60 -0.15 -3.07 16 13 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 14 N -0.59 -14.36 3.00 -172.31 -0.52 -14.87 16 15 C -0.26 -6.88 9.59 -15.06 -0.14 -7.03 16 16 H 0.07 1.73 7.88 -52.48 -0.41 1.32 16 17 C 0.00 0.13 4.95 -17.43 -0.09 0.04 16 18 N -0.90 -25.77 11.11 55.49 0.62 -25.15 16 19 Si 0.91 21.28 29.58 -169.99 -5.03 16.25 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 C 0.12 2.46 6.14 -3.71 -0.02 2.44 16 24 C 0.08 1.38 3.14 -26.61 -0.08 1.30 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 O -0.57 -8.74 13.16 -35.23 -0.46 -9.20 16 27 N -0.41 -5.43 9.65 -5.88 -0.06 -5.49 16 28 C 0.07 0.71 6.79 -82.43 -0.56 0.15 16 29 C -0.10 -0.66 9.78 36.01 0.35 -0.31 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.31 5.95 -51.93 -0.31 0.00 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 1.53 5.85 -51.93 -0.30 1.23 16 36 H 0.41 6.08 7.97 -40.82 -0.33 5.76 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.10 2.52 6.01 -51.93 -0.31 2.21 16 40 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.16 7.93 -51.93 -0.41 0.74 16 44 H 0.37 4.11 9.08 45.56 0.41 4.52 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.33 5.94 -51.93 -0.31 0.02 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -32.33 378.32 -8.11 -40.44 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.15 Total: 8.94 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -1.96 Total: 10.32 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.28 Total: -62.77 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.39 Total: -18.87 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.33 -8.11 -40.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090417159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.145 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds