Wall clock time and date at job start Tue Mar 31 2020 19:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32133 * 119.90436 * 2 1 4 4 C 1.32084 * 120.07476 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.06383 * 179.97438 * 4 3 2 6 6 C 1.39437 * 119.87091 * 0.02562 * 4 3 2 7 7 C 1.48151 * 120.09701 * 179.97438 * 6 4 3 8 8 O 1.21519 * 120.00263 * 354.35577 * 7 6 4 9 9 N 1.34778 * 120.00441 * 174.34910 * 7 6 4 10 10 C 1.46495 * 120.00333 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46195 * 325.03017 * 10 9 7 12 12 C 1.53040 * 109.46206 * 85.00653 * 10 9 7 13 13 C 1.53198 * 109.31176 * 58.65131 * 12 10 9 14 14 N 1.46919 * 108.77449 * 54.63898 * 13 12 10 15 15 C 1.36939 * 120.63150 * 126.11215 * 14 13 12 16 16 H 1.07995 * 119.99992 * 330.49232 * 15 14 13 17 17 C 1.38808 * 120.00098 * 150.48342 * 15 14 13 18 18 N 1.31618 * 120.00257 * 345.95900 * 17 15 14 19 19 Si 1.86798 * 120.00073 * 165.95134 * 17 15 14 20 20 H 1.48500 * 109.47205 * 60.00248 * 19 17 15 21 21 H 1.48504 * 109.47248 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47236 * 300.00326 * 19 17 15 23 23 C 1.46925 * 118.74152 * 306.38993 * 14 13 12 24 24 C 1.53045 * 109.46039 * 205.07424 * 10 9 7 25 25 H 1.08999 * 109.49684 * 181.36741 * 24 10 9 26 26 O 1.42898 * 109.49917 * 61.29413 * 24 10 9 27 27 N 1.33002 * 119.80813 * 0.27244 * 6 4 3 28 28 C 1.31804 * 119.92496 * 359.45305 * 27 6 4 29 29 C 1.50693 * 119.93773 * 180.27265 * 28 27 6 30 30 H 1.09003 * 109.47250 * 89.99896 * 1 2 3 31 31 H 1.09001 * 109.47111 * 210.00151 * 1 2 3 32 32 H 1.08998 * 109.47383 * 329.99971 * 1 2 3 33 33 H 1.09000 * 109.46937 * 263.45390 * 5 4 3 34 34 H 1.08998 * 109.46955 * 23.46015 * 5 4 3 35 35 H 1.09000 * 109.47012 * 143.45705 * 5 4 3 36 36 H 0.97004 * 119.99286 * 0.02562 * 9 7 6 37 37 H 1.09006 * 109.49194 * 298.70547 * 12 10 9 38 38 H 1.08994 * 109.52552 * 178.62207 * 12 10 9 39 39 H 1.09002 * 109.58684 * 294.84838 * 13 12 10 40 40 H 1.09005 * 109.69723 * 174.49674 * 13 12 10 41 41 H 0.96999 * 120.00234 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.59128 * 173.39366 * 23 14 13 43 43 H 1.09002 * 109.58661 * 293.82547 * 23 14 13 44 44 H 0.96704 * 113.99985 * 180.02562 * 26 24 10 45 45 H 1.08999 * 109.47287 * 270.27719 * 29 28 27 46 46 H 1.09006 * 109.47072 * 30.27753 * 29 28 27 47 47 H 1.09006 * 109.47153 * 150.27429 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1493 -0.0005 5 6 4.2376 2.4559 -0.0011 6 6 4.1846 -0.0577 -0.0016 7 6 5.6661 -0.0592 -0.0027 8 8 6.2747 0.9875 -0.1062 9 7 6.3390 -1.2214 0.1111 10 6 7.8040 -1.2227 0.1106 11 1 8.1676 -0.4425 -0.5582 12 6 8.3147 -0.9576 1.5287 13 6 7.7737 -2.0367 2.4720 14 7 8.1352 -3.3565 1.9374 15 6 8.8036 -4.2648 2.7143 16 1 9.4717 -3.9229 3.4909 17 6 8.6223 -5.6248 2.5038 18 7 7.6201 -6.0482 1.7632 19 14 9.8008 -6.8540 3.2715 20 1 9.7702 -6.7126 4.7494 21 1 9.3923 -8.2318 2.8970 22 1 11.1773 -6.5949 2.7779 23 6 7.7714 -3.6813 0.5515 24 6 8.3124 -2.5837 -0.3704 25 1 9.4021 -2.5936 -0.3480 26 8 7.8605 -2.8169 -1.7059 27 7 3.5166 -1.2078 -0.0076 28 6 2.1985 -1.2026 -0.0016 29 6 1.4414 -2.5056 -0.0022 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 4.5199 2.7122 -1.0222 34 1 3.6016 3.2408 0.4081 35 1 5.1347 2.3595 0.6105 36 1 5.8532 -2.0569 0.1935 37 1 7.9715 0.0220 1.8616 38 1 9.4043 -0.9826 1.5341 39 1 6.6888 -1.9538 2.5381 40 1 8.2108 -1.9113 3.4627 41 1 7.4936 -6.9986 1.6157 42 1 8.2091 -4.6401 0.2738 43 1 6.6864 -3.7325 0.4609 44 1 8.1461 -3.6637 -2.0755 45 1 1.2585 -2.8190 -1.0299 46 1 2.0286 -3.2672 0.5110 47 1 0.4895 -2.3729 0.5122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090417161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:48 Heat of formation + Delta-G solvation = -16.708949 kcal Electronic energy + Delta-G solvation = -30032.700568 eV Core-core repulsion = 26023.240942 eV Total energy + Delta-G solvation = -4009.459626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53834 -39.65476 -37.87685 -35.31140 -35.16024 -34.40229 -34.04023 -31.96333 -30.27326 -29.80912 -29.05379 -28.69213 -26.32599 -25.26205 -23.73240 -22.63364 -22.15694 -21.68877 -20.77867 -18.82225 -18.31068 -17.52134 -16.82726 -16.53087 -15.92218 -15.44229 -15.27435 -14.94862 -14.73248 -14.38588 -13.99152 -13.76788 -13.66247 -13.50184 -13.37138 -13.21335 -13.08511 -12.79314 -12.73777 -12.30349 -12.26642 -12.23716 -11.97573 -11.84133 -11.69351 -11.58011 -11.07012 -11.01855 -10.87442 -10.83512 -10.45319 -10.22678 -10.02016 -9.88898 -9.61981 -9.33688 -9.07318 -9.02029 -8.65306 -8.52487 -6.75447 -5.88615 -3.35220 0.34589 0.95734 2.81637 3.26381 3.32331 3.38166 3.39182 3.69017 3.83190 3.89552 4.25344 4.39296 4.52741 4.61446 4.79103 5.01003 5.08250 5.19281 5.26324 5.26519 5.40342 5.43434 5.43967 5.53105 5.62708 5.68673 5.69950 5.79567 5.82676 5.85689 5.93055 6.03653 6.10591 6.23508 6.36081 6.41766 6.46727 6.70207 6.81117 6.93009 7.07372 7.11642 7.43852 7.56788 7.69703 7.88962 8.10758 8.35514 8.42650 9.09812 9.71679 10.28532 11.19218 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.003480 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.594418 B = 8044.147092 C = 9026.035464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.102 3.898 3 N -0.445 5.445 4 C 0.134 3.866 5 C -0.103 4.103 6 C 0.030 3.970 7 C 0.573 3.427 8 O -0.537 6.537 9 N -0.679 5.679 10 C 0.163 3.837 11 H 0.081 0.919 12 C -0.145 4.145 13 C 0.145 3.855 14 N -0.587 5.587 15 C -0.257 4.257 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.903 5.903 19 Si 0.905 3.095 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.146 3.854 24 C 0.066 3.934 25 H 0.063 0.937 26 O -0.572 6.572 27 N -0.401 5.401 28 C 0.071 3.929 29 C -0.104 4.104 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.019 0.981 40 H 0.057 0.943 41 H 0.255 0.745 42 H 0.093 0.907 43 H 0.026 0.974 44 H 0.376 0.624 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 9.875 -5.236 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.041 4.041 3 N -0.161 5.161 4 C -0.006 4.006 5 C -0.160 4.160 6 C -0.112 4.112 7 C 0.357 3.643 8 O -0.416 6.416 9 N -0.330 5.330 10 C 0.059 3.941 11 H 0.099 0.901 12 C -0.185 4.185 13 C 0.018 3.982 14 N -0.311 5.311 15 C -0.386 4.386 16 H 0.085 0.915 17 C -0.194 4.194 18 N -0.547 5.547 19 Si 0.735 3.265 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.019 3.981 24 C 0.005 3.995 25 H 0.081 0.919 26 O -0.377 6.377 27 N -0.118 5.118 28 C -0.073 4.073 29 C -0.161 4.161 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.111 0.889 43 H 0.044 0.956 44 H 0.223 0.777 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.078 11.002 -5.254 16.473 hybrid contribution 0.572 -1.777 0.313 1.893 sum -10.507 9.225 -4.942 14.829 Atomic orbital electron populations 1.20820 0.87522 1.04216 1.03677 1.22386 0.98485 0.88984 0.94236 1.68280 1.07878 1.28823 1.11093 1.22327 0.89711 0.96677 0.91882 1.21032 1.00032 0.90476 1.04501 1.22042 0.96002 0.90051 1.03078 1.17549 0.84805 0.84536 0.77451 1.90695 1.68450 1.30973 1.51436 1.45882 1.07478 1.09295 1.70327 1.20913 0.78815 0.97267 0.97151 0.90058 1.22416 1.01244 0.99912 0.94909 1.20926 0.96552 0.85486 0.95199 1.43915 1.66748 1.12176 1.08279 1.19157 1.18370 0.86267 1.14830 0.91550 1.25112 0.96997 0.97500 0.99756 1.69980 1.28457 1.14070 1.42161 0.86336 0.80704 0.80329 0.79165 1.20802 1.21576 1.20957 1.21414 0.97289 0.96153 0.83229 1.22948 0.97811 0.96112 0.82584 0.91916 1.86419 1.79359 1.42504 1.29416 1.68226 1.08547 1.28587 1.06425 1.22135 0.90083 0.96920 0.98158 1.20793 0.99263 0.92406 1.03681 0.89651 0.89579 0.90034 0.89700 0.91264 0.87328 0.74716 0.91649 0.90928 0.96288 0.92431 0.93455 0.88869 0.95577 0.77724 0.89829 0.89553 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 9.78 36.00 0.35 -0.42 16 2 C 0.10 1.21 6.79 -82.28 -0.56 0.65 16 3 N -0.45 -6.18 10.34 -5.24 -0.05 -6.23 16 4 C 0.13 2.00 6.82 -82.04 -0.56 1.44 16 5 C -0.10 -1.34 8.89 36.01 0.32 -1.02 16 6 C 0.03 0.49 6.75 -82.84 -0.56 -0.07 16 7 C 0.57 10.13 7.72 -12.19 -0.09 10.04 16 8 O -0.54 -9.82 12.99 5.35 0.07 -9.75 16 9 N -0.68 -12.33 4.14 -54.61 -0.23 -12.56 16 10 C 0.16 2.97 2.47 -67.89 -0.17 2.80 16 11 H 0.08 1.50 7.57 -51.93 -0.39 1.11 16 12 C -0.14 -2.59 5.77 -26.61 -0.15 -2.74 16 13 C 0.14 3.00 6.26 -3.71 -0.02 2.97 16 14 N -0.59 -14.00 2.99 -172.31 -0.51 -14.51 16 15 C -0.26 -6.75 9.58 -15.06 -0.14 -6.89 16 16 H 0.07 1.72 7.87 -52.49 -0.41 1.31 16 17 C 0.01 0.14 4.98 -17.43 -0.09 0.05 16 18 N -0.90 -24.91 11.13 55.49 0.62 -24.29 16 19 Si 0.91 20.90 29.58 -169.99 -5.03 15.88 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.15 3.25 4.62 -3.71 -0.02 3.24 16 24 C 0.07 1.24 3.36 -26.60 -0.09 1.15 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 O -0.57 -10.00 13.21 -35.23 -0.47 -10.47 16 27 N -0.40 -6.38 9.65 -5.89 -0.06 -6.44 16 28 C 0.07 0.91 6.79 -82.42 -0.56 0.35 16 29 C -0.10 -0.96 9.78 36.00 0.35 -0.61 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.46 5.95 -51.93 -0.31 0.15 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.11 1.53 5.83 -51.93 -0.30 1.23 16 36 H 0.41 7.96 6.23 -40.82 -0.25 7.71 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.09 2.31 6.08 -51.93 -0.32 1.99 16 43 H 0.03 0.63 6.64 -51.93 -0.34 0.28 16 44 H 0.38 5.25 9.08 45.56 0.41 5.67 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 0.53 5.95 -51.93 -0.31 0.22 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -31.09 374.15 -7.99 -39.08 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -5.98 Total: 12.70 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -1.99 Total: 10.94 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.23 Total: -64.03 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.40 Total: -20.21 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.09 -7.99 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090417161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.375 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds