Wall clock time and date at job start Tue Mar 31 2020 19:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32133 * 119.90436 * 2 1 4 4 C 1.32084 * 120.07476 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.06383 * 179.97438 * 4 3 2 6 6 C 1.39437 * 119.87091 * 0.02562 * 4 3 2 7 7 C 1.48151 * 120.09701 * 179.97438 * 6 4 3 8 8 O 1.21519 * 120.00263 * 354.35577 * 7 6 4 9 9 N 1.34778 * 120.00441 * 174.34910 * 7 6 4 10 10 C 1.46495 * 120.00333 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46195 * 325.03017 * 10 9 7 12 12 C 1.53040 * 109.46206 * 85.00653 * 10 9 7 13 13 C 1.53198 * 109.31176 * 58.65131 * 12 10 9 14 14 N 1.46919 * 108.77449 * 54.63898 * 13 12 10 15 15 C 1.36939 * 120.63150 * 126.11215 * 14 13 12 16 16 H 1.07995 * 119.99992 * 330.49232 * 15 14 13 17 17 C 1.38808 * 120.00098 * 150.48342 * 15 14 13 18 18 N 1.31618 * 120.00257 * 345.95900 * 17 15 14 19 19 Si 1.86798 * 120.00073 * 165.95134 * 17 15 14 20 20 H 1.48500 * 109.47205 * 60.00248 * 19 17 15 21 21 H 1.48504 * 109.47248 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47236 * 300.00326 * 19 17 15 23 23 C 1.46925 * 118.74152 * 306.38993 * 14 13 12 24 24 C 1.53045 * 109.46039 * 205.07424 * 10 9 7 25 25 H 1.08999 * 109.49684 * 181.36741 * 24 10 9 26 26 O 1.42898 * 109.49917 * 61.29413 * 24 10 9 27 27 N 1.33002 * 119.80813 * 0.27244 * 6 4 3 28 28 C 1.31804 * 119.92496 * 359.45305 * 27 6 4 29 29 C 1.50693 * 119.93773 * 180.27265 * 28 27 6 30 30 H 1.09003 * 109.47250 * 89.99896 * 1 2 3 31 31 H 1.09001 * 109.47111 * 210.00151 * 1 2 3 32 32 H 1.08998 * 109.47383 * 329.99971 * 1 2 3 33 33 H 1.09000 * 109.46937 * 263.45390 * 5 4 3 34 34 H 1.08998 * 109.46955 * 23.46015 * 5 4 3 35 35 H 1.09000 * 109.47012 * 143.45705 * 5 4 3 36 36 H 0.97004 * 119.99286 * 0.02562 * 9 7 6 37 37 H 1.09006 * 109.49194 * 298.70547 * 12 10 9 38 38 H 1.08994 * 109.52552 * 178.62207 * 12 10 9 39 39 H 1.09002 * 109.58684 * 294.84838 * 13 12 10 40 40 H 1.09005 * 109.69723 * 174.49674 * 13 12 10 41 41 H 0.96999 * 120.00234 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.59128 * 173.39366 * 23 14 13 43 43 H 1.09002 * 109.58661 * 293.82547 * 23 14 13 44 44 H 0.96704 * 113.99985 * 180.02562 * 26 24 10 45 45 H 1.08999 * 109.47287 * 270.27719 * 29 28 27 46 46 H 1.09006 * 109.47072 * 30.27753 * 29 28 27 47 47 H 1.09006 * 109.47153 * 150.27429 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1493 -0.0005 5 6 4.2376 2.4559 -0.0011 6 6 4.1846 -0.0577 -0.0016 7 6 5.6661 -0.0592 -0.0027 8 8 6.2747 0.9875 -0.1062 9 7 6.3390 -1.2214 0.1111 10 6 7.8040 -1.2227 0.1106 11 1 8.1676 -0.4425 -0.5582 12 6 8.3147 -0.9576 1.5287 13 6 7.7737 -2.0367 2.4720 14 7 8.1352 -3.3565 1.9374 15 6 8.8036 -4.2648 2.7143 16 1 9.4717 -3.9229 3.4909 17 6 8.6223 -5.6248 2.5038 18 7 7.6201 -6.0482 1.7632 19 14 9.8008 -6.8540 3.2715 20 1 9.7702 -6.7126 4.7494 21 1 9.3923 -8.2318 2.8970 22 1 11.1773 -6.5949 2.7779 23 6 7.7714 -3.6813 0.5515 24 6 8.3124 -2.5837 -0.3704 25 1 9.4021 -2.5936 -0.3480 26 8 7.8605 -2.8169 -1.7059 27 7 3.5166 -1.2078 -0.0076 28 6 2.1985 -1.2026 -0.0016 29 6 1.4414 -2.5056 -0.0022 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 4.5199 2.7122 -1.0222 34 1 3.6016 3.2408 0.4081 35 1 5.1347 2.3595 0.6105 36 1 5.8532 -2.0569 0.1935 37 1 7.9715 0.0220 1.8616 38 1 9.4043 -0.9826 1.5341 39 1 6.6888 -1.9538 2.5381 40 1 8.2108 -1.9113 3.4627 41 1 7.4936 -6.9986 1.6157 42 1 8.2091 -4.6401 0.2738 43 1 6.6864 -3.7325 0.4609 44 1 8.1461 -3.6637 -2.0755 45 1 1.2585 -2.8190 -1.0299 46 1 2.0286 -3.2672 0.5110 47 1 0.4895 -2.3729 0.5122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090417161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:47 Heat of formation + Delta-G solvation = -40.001215 kcal Electronic energy + Delta-G solvation = -30033.710597 eV Core-core repulsion = 26023.240942 eV Total energy + Delta-G solvation = -4010.469655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.61503 -41.06089 -39.36978 -36.87861 -36.30700 -35.59722 -35.35918 -33.69031 -31.54240 -31.13617 -30.55386 -29.72613 -27.56042 -26.93363 -24.70295 -24.14735 -23.62492 -23.18692 -22.03647 -20.34444 -19.50511 -18.99040 -18.39260 -18.10231 -17.03528 -16.97364 -16.64958 -16.23031 -16.00574 -15.89859 -15.55633 -15.39565 -15.02481 -14.60842 -14.51735 -14.34909 -13.99054 -13.89991 -13.75511 -13.69914 -13.56154 -13.33135 -13.27246 -13.14343 -12.86274 -12.84100 -12.68384 -12.63736 -12.48978 -12.20528 -12.01457 -11.87048 -11.83948 -11.28052 -11.15289 -10.93509 -10.59390 -10.20185 -10.17084 -9.86005 -8.69335 -7.89205 -5.38954 -0.73163 -0.09776 1.48919 1.50087 1.56865 1.58265 1.97193 2.49441 2.56211 2.81638 2.90210 3.12770 3.24010 3.27382 3.56273 3.64271 3.80725 3.89463 4.01339 4.11771 4.16444 4.24809 4.34188 4.44005 4.53429 4.65457 4.67002 4.70540 4.74543 4.78746 4.86223 4.87075 4.92616 4.97530 5.04012 5.06291 5.15022 5.23499 5.29796 5.45490 5.50806 5.58802 5.64093 6.07036 6.35307 6.36410 6.62784 6.80942 7.03303 7.12006 7.78516 8.31914 9.16159 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.003480 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.594418 B = 8044.147092 C = 9026.035464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.111 3.889 3 N -0.456 5.456 4 C 0.126 3.874 5 C -0.096 4.096 6 C -0.002 4.002 7 C 0.571 3.429 8 O -0.548 6.548 9 N -0.684 5.684 10 C 0.165 3.835 11 H 0.084 0.916 12 C -0.131 4.131 13 C 0.146 3.854 14 N -0.601 5.601 15 C -0.269 4.269 16 H 0.068 0.932 17 C -0.042 4.042 18 N -0.930 5.930 19 Si 0.968 3.032 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.277 1.277 23 C 0.160 3.840 24 C 0.083 3.917 25 H 0.069 0.931 26 O -0.575 6.575 27 N -0.429 5.429 28 C 0.062 3.938 29 C -0.102 4.102 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.408 0.592 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.007 0.993 40 H 0.059 0.941 41 H 0.252 0.748 42 H 0.067 0.933 43 H 0.004 0.996 44 H 0.391 0.609 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.533 10.417 -5.382 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.032 4.032 3 N -0.172 5.172 4 C -0.012 4.012 5 C -0.153 4.153 6 C -0.141 4.141 7 C 0.357 3.643 8 O -0.427 6.427 9 N -0.333 5.333 10 C 0.060 3.940 11 H 0.102 0.898 12 C -0.171 4.171 13 C 0.021 3.979 14 N -0.326 5.326 15 C -0.399 4.399 16 H 0.086 0.914 17 C -0.238 4.238 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.204 1.204 21 H -0.220 1.220 22 H -0.203 1.203 23 C 0.033 3.967 24 C 0.022 3.978 25 H 0.087 0.913 26 O -0.381 6.381 27 N -0.146 5.146 28 C -0.083 4.083 29 C -0.159 4.159 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.245 0.755 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.025 0.975 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.022 0.978 44 H 0.241 0.759 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.304 11.583 -5.408 17.742 hybrid contribution 0.790 -1.956 0.350 2.138 sum -11.513 9.627 -5.058 15.837 Atomic orbital electron populations 1.21035 0.83815 1.05812 1.05365 1.23189 1.00686 0.88035 0.91331 1.68398 1.07239 1.29713 1.11838 1.22530 0.90399 0.96689 0.91631 1.20965 0.99623 0.90323 1.04437 1.21854 0.95249 0.90992 1.06014 1.17805 0.85663 0.84079 0.76799 1.90675 1.69051 1.31076 1.51935 1.45871 1.07305 1.09255 1.70901 1.20885 0.79128 0.96751 0.97212 0.89776 1.22268 1.01667 0.99133 0.94009 1.20962 0.95923 0.85031 0.96001 1.44122 1.66767 1.12853 1.08843 1.19472 1.18421 0.87025 1.15011 0.91426 1.25807 0.98390 0.99021 1.00565 1.70132 1.29930 1.13942 1.43515 0.85351 0.78923 0.77806 0.78356 1.20429 1.21996 1.20275 1.21175 0.95738 0.96240 0.83530 1.22632 0.97791 0.95022 0.82354 0.91326 1.86401 1.79506 1.43752 1.28478 1.68182 1.10288 1.28805 1.07355 1.22824 0.89354 0.98933 0.97213 1.20943 0.99946 0.90046 1.04940 0.87579 0.86963 0.89442 0.89442 0.89511 0.88708 0.75492 0.90603 0.89897 0.97504 0.92278 0.93930 0.91475 0.97821 0.75946 0.88238 0.91280 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.78 71.23 0.70 -0.44 16 2 C 0.11 2.43 6.79 42.63 0.29 2.72 16 3 N -0.46 -12.09 10.34 -170.48 -1.76 -13.85 16 4 C 0.13 3.75 6.82 42.81 0.29 4.04 16 5 C -0.10 -2.47 8.89 71.24 0.63 -1.84 16 6 C 0.00 -0.06 6.75 41.89 0.28 0.23 16 7 C 0.57 20.64 7.72 86.88 0.67 21.31 16 8 O -0.55 -20.25 12.99 -3.77 -0.05 -20.30 16 9 N -0.68 -25.35 4.14 -444.99 -1.84 -27.20 16 10 C 0.16 5.98 2.47 45.02 0.11 6.09 16 11 H 0.08 3.05 7.57 -2.39 -0.02 3.03 16 12 C -0.13 -4.63 5.77 30.67 0.18 -4.45 16 13 C 0.15 6.12 6.26 86.37 0.54 6.66 16 14 N -0.60 -29.09 2.99 -699.08 -2.09 -31.18 16 15 C -0.27 -14.27 9.58 84.03 0.81 -13.46 16 16 H 0.07 3.50 7.87 -2.91 -0.02 3.47 16 17 C -0.04 -2.23 4.98 84.86 0.42 -1.81 16 18 N -0.93 -52.38 11.13 21.65 0.24 -52.14 16 19 Si 0.97 43.17 29.58 68.60 2.03 45.20 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 23 C 0.16 7.31 4.62 86.37 0.40 7.70 16 24 C 0.08 3.11 3.36 30.68 0.10 3.22 16 25 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 26 O -0.57 -19.93 13.21 -148.98 -1.97 -21.90 16 27 N -0.43 -13.83 9.65 -172.53 -1.67 -15.50 16 28 C 0.06 1.53 6.79 42.68 0.29 1.82 16 29 C -0.10 -1.68 9.78 71.23 0.70 -0.98 16 30 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 0.67 5.95 -2.39 -0.01 0.65 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 2.71 5.83 -2.39 -0.01 2.69 16 36 H 0.41 16.29 6.23 -92.70 -0.58 15.72 16 37 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 38 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.01 0.31 7.74 -2.39 -0.02 0.29 16 40 H 0.06 2.41 7.93 -2.38 -0.02 2.39 16 41 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 42 H 0.07 3.42 6.08 -2.39 -0.01 3.40 16 43 H 0.00 0.19 6.64 -2.39 -0.02 0.18 16 44 H 0.39 10.79 9.08 -74.05 -0.67 10.12 16 45 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.12 1.07 5.95 -2.38 -0.01 1.05 16 Total: -1.00 -68.10 374.15 -0.92 -69.02 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -0.23 Total: 37.03 kcal Atomic # 6 Polarization: 24.40 SS G_CDS: 6.41 Total: 30.80 kcal Atomic # 7 Polarization: -132.75 SS G_CDS: -7.12 Total: -139.87 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -2.02 Total: -42.19 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -68.10 -0.92 -69.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090417161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.023 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds