Wall clock time and date at job start Tue Mar 31 2020 19:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32089 * 119.84870 * 2 1 4 4 C 1.32611 * 120.00697 * 180.02562 * 3 2 1 5 5 O 1.35425 * 120.14973 * 180.02562 * 4 3 2 6 6 C 1.40221 * 119.70173 * 359.97438 * 4 3 2 7 7 C 1.47840 * 120.14520 * 180.02562 * 6 4 3 8 8 O 1.21557 * 120.00042 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00210 * 180.02562 * 7 6 4 10 10 C 1.46494 * 119.99924 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47093 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.77580 * 51.76189 * 11 10 9 13 13 C 1.54325 * 110.72022 * 288.52410 * 11 10 9 14 14 N 1.47290 * 107.30599 * 219.45263 * 13 11 10 15 15 C 1.36938 * 125.79079 * 178.92205 * 14 13 11 16 16 H 1.07995 * 120.00281 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99650 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00025 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47190 * 89.99819 * 19 17 15 21 21 H 1.48500 * 109.47472 * 210.00112 * 19 17 15 22 22 H 1.48507 * 109.46699 * 329.99987 * 19 17 15 23 23 C 1.47425 * 108.55742 * 358.92448 * 14 13 11 24 24 C 1.54908 * 104.92961 * 24.15407 * 23 14 13 25 25 H 1.09008 * 111.00422 * 81.04917 * 24 23 14 26 26 C 1.52999 * 111.00368 * 204.85960 * 24 23 14 27 27 N 1.32987 * 119.70936 * 0.27814 * 6 4 3 28 28 C 1.31761 * 119.98681 * 359.42452 * 27 6 4 29 29 C 1.50696 * 119.85470 * 180.29880 * 28 27 6 30 30 H 1.09000 * 109.47050 * 89.99796 * 1 2 3 31 31 H 1.08999 * 109.47179 * 209.99842 * 1 2 3 32 32 H 1.09003 * 109.47349 * 329.99936 * 1 2 3 33 33 H 0.96698 * 114.00068 * 269.97761 * 5 4 3 34 34 H 0.96994 * 119.99369 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47310 * 60.00424 * 10 9 7 36 36 H 1.09004 * 109.47167 * 299.99783 * 10 9 7 37 37 H 1.09004 * 109.88239 * 338.86059 * 13 11 10 38 38 H 1.08999 * 109.88411 * 100.02489 * 13 11 10 39 39 H 0.97001 * 119.99611 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.36696 * 265.26054 * 23 14 13 41 41 H 1.08995 * 110.36608 * 143.04891 * 23 14 13 42 42 H 1.09001 * 109.47276 * 58.55057 * 26 24 23 43 43 H 1.09003 * 109.46690 * 178.54597 * 26 24 23 44 44 H 1.08998 * 109.47248 * 298.54758 * 26 24 23 45 45 H 1.08997 * 109.47250 * 270.29918 * 29 28 27 46 46 H 1.08998 * 109.47140 * 30.29936 * 29 28 27 47 47 H 1.09004 * 109.47241 * 150.29904 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1645 1.1457 0.0000 4 6 3.4906 1.1493 -0.0005 5 8 4.1675 2.3222 0.0000 6 6 4.1887 -0.0667 -0.0005 7 6 5.6671 -0.0741 -0.0005 8 8 6.2801 0.9756 -0.0010 9 7 6.3352 -1.2446 -0.0010 10 6 7.8001 -1.2518 -0.0016 11 6 8.3030 -2.6968 -0.0028 12 1 7.8341 -3.2688 -0.8034 13 6 8.0499 -3.3642 1.3655 14 7 9.2273 -4.1941 1.6727 15 6 9.4090 -4.9372 2.8086 16 1 8.6483 -4.9467 3.5751 17 6 10.5710 -5.6781 2.9746 18 7 11.4983 -5.6661 2.0406 19 14 10.8187 -6.6923 4.5236 20 1 10.2737 -8.0577 4.3138 21 1 12.2688 -6.7800 4.8313 22 1 10.1104 -6.0454 5.6573 23 6 10.1791 -4.0914 0.5517 24 6 9.8487 -2.7401 -0.1299 25 1 10.3088 -1.9096 0.4057 26 6 10.2783 -2.7470 -1.5983 27 7 3.5151 -1.2134 -0.0056 28 6 2.1976 -1.2032 0.0008 29 6 1.4374 -2.5044 0.0019 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 4.3641 2.6633 -0.8832 34 1 5.8460 -2.0821 -0.0010 35 1 8.1664 -0.7401 0.8884 36 1 8.1657 -0.7396 -0.8917 37 1 7.9249 -2.6003 2.1331 38 1 7.1588 -3.9898 1.3137 39 1 12.3101 -6.1842 2.1565 40 1 10.0323 -4.9148 -0.1473 41 1 11.2038 -4.0883 0.9232 42 1 9.7726 -3.5589 -2.1210 43 1 10.0114 -1.7961 -2.0594 44 1 11.3569 -2.8910 -1.6606 45 1 1.2537 -2.8187 -1.0255 46 1 2.0227 -3.2668 0.5159 47 1 0.4858 -2.3688 0.5160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092720302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:23 Heat of formation + Delta-G solvation = -34.790578 kcal Electronic energy + Delta-G solvation = -28717.858187 eV Core-core repulsion = 24707.614482 eV Total energy + Delta-G solvation = -4010.243705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.67575 -40.69819 -39.55046 -38.74451 -36.13516 -35.80744 -34.66943 -34.29113 -32.55476 -31.06046 -29.81359 -28.64711 -27.81372 -26.64528 -24.99956 -24.51631 -23.79219 -22.10857 -21.50812 -20.88345 -19.93777 -19.43745 -18.97826 -18.59336 -17.38067 -17.12709 -16.78202 -16.37760 -16.02011 -15.70788 -15.58830 -15.36617 -14.90696 -14.72236 -14.37632 -14.24202 -14.04368 -13.95707 -13.88654 -13.54648 -13.39785 -13.34952 -13.02885 -12.96886 -12.86349 -12.75695 -12.70149 -12.49899 -12.47142 -12.00942 -11.97758 -11.85975 -11.65865 -11.52085 -11.41020 -11.11651 -10.74705 -10.28763 -10.22236 -9.91933 -8.88602 -7.77487 -5.21996 -0.87137 -0.23500 1.45477 1.47385 1.51542 1.56146 1.82523 2.23631 2.48661 2.48997 2.74512 3.08213 3.31191 3.43443 3.60577 3.73523 3.78560 3.87205 3.93642 3.97979 4.01366 4.36315 4.48855 4.57633 4.60948 4.70798 4.73457 4.75109 4.79217 4.83750 4.88080 4.95846 4.96622 5.09513 5.10730 5.13476 5.30330 5.38415 5.38862 5.44400 5.49335 5.72761 5.84293 5.89897 6.25856 6.31973 6.45896 6.52532 6.99945 7.11077 7.78011 8.42312 9.23920 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.002593 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.065448 B =10795.213944 C =11863.655158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.136 3.864 3 N -0.481 5.481 4 C 0.311 3.689 5 O -0.467 6.467 6 C -0.011 4.011 7 C 0.571 3.429 8 O -0.548 6.548 9 N -0.698 5.698 10 C 0.143 3.857 11 C -0.089 4.089 12 H 0.095 0.905 13 C 0.137 3.863 14 N -0.629 5.629 15 C -0.239 4.239 16 H 0.077 0.923 17 C -0.067 4.067 18 N -0.947 5.947 19 Si 0.980 3.020 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.272 1.272 23 C 0.162 3.838 24 C -0.099 4.099 25 H 0.067 0.933 26 C -0.127 4.127 27 N -0.407 5.407 28 C 0.067 3.933 29 C -0.102 4.102 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.421 0.579 34 H 0.415 0.585 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.017 0.983 38 H 0.026 0.974 39 H 0.247 0.753 40 H -0.009 1.009 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.104 0.896 46 H 0.078 0.922 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.768 9.983 -10.501 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.008 4.008 3 N -0.206 5.206 4 C 0.130 3.870 5 O -0.276 6.276 6 C -0.152 4.152 7 C 0.355 3.645 8 O -0.425 6.425 9 N -0.349 5.349 10 C 0.020 3.980 11 C -0.108 4.108 12 H 0.114 0.886 13 C 0.012 3.988 14 N -0.355 5.355 15 C -0.368 4.368 16 H 0.095 0.905 17 C -0.259 4.259 18 N -0.597 5.597 19 Si 0.808 3.192 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.197 1.197 23 C 0.037 3.963 24 C -0.120 4.120 25 H 0.086 0.914 26 C -0.185 4.185 27 N -0.126 5.126 28 C -0.079 4.079 29 C -0.160 4.160 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.284 0.716 34 H 0.252 0.748 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.009 0.991 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.123 0.877 46 H 0.097 0.903 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.026 10.658 -9.813 27.205 hybrid contribution 0.649 -0.784 0.568 1.166 sum -22.377 9.874 -9.245 26.147 Atomic orbital electron populations 1.21141 0.83634 1.06017 1.05759 1.23073 1.00512 0.86805 0.90381 1.68068 1.07644 1.31570 1.13337 1.20031 0.87404 0.86370 0.93200 1.84699 1.72956 1.34518 1.35391 1.22152 0.95311 0.90435 1.07301 1.17692 0.85499 0.84170 0.77112 1.90802 1.68653 1.32115 1.50976 1.45823 1.07632 1.08697 1.72733 1.21328 0.78334 0.96006 1.02325 1.22330 0.96752 0.94461 0.97230 0.88645 1.21543 0.89863 0.92677 0.94692 1.44869 1.18043 1.53783 1.18760 1.19425 1.02058 1.19930 0.95435 0.90499 1.25623 0.96743 1.02039 1.01527 1.70055 1.09294 1.45596 1.34779 0.85059 0.76628 0.78488 0.79034 1.21170 1.21877 1.19680 1.21770 0.95895 0.91614 0.87058 1.22441 0.93633 0.98288 0.97608 0.91442 1.21604 1.01309 1.02258 0.93290 1.68189 1.09951 1.27362 1.07125 1.22881 0.89269 0.98929 0.96775 1.21002 0.99904 0.89651 1.05402 0.87032 0.86312 0.89806 0.71616 0.74777 0.92585 0.89724 0.96494 0.95642 0.94306 0.99077 0.91223 0.92546 0.90721 0.92709 0.87719 0.90292 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.78 71.24 0.70 0.11 16 2 C 0.14 2.10 6.79 42.64 0.29 2.39 16 3 N -0.48 -10.55 10.44 -295.25 -3.08 -13.63 16 4 C 0.31 7.88 7.78 85.06 0.66 8.55 16 5 O -0.47 -11.73 11.64 -66.31 -0.77 -12.50 16 6 C -0.01 -0.30 6.77 41.99 0.28 -0.01 16 7 C 0.57 17.07 7.80 86.79 0.68 17.75 16 8 O -0.55 -19.00 15.17 17.00 0.26 -18.74 16 9 N -0.70 -19.35 5.46 -465.97 -2.54 -21.89 16 10 C 0.14 4.21 5.02 86.38 0.43 4.65 16 11 C -0.09 -2.90 2.43 -9.60 -0.02 -2.93 16 12 H 0.10 2.84 8.01 -2.39 -0.02 2.83 16 13 C 0.14 5.72 6.77 86.68 0.59 6.30 16 14 N -0.63 -33.00 3.40 -691.31 -2.35 -35.35 16 15 C -0.24 -13.73 10.28 84.03 0.86 -12.86 16 16 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 17 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 18 N -0.95 -57.02 10.09 21.65 0.22 -56.80 16 19 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 C 0.16 7.97 5.35 86.85 0.47 8.44 16 24 C -0.10 -3.63 3.09 -9.40 -0.03 -3.66 16 25 H 0.07 2.53 8.05 -2.38 -0.02 2.51 16 26 C -0.13 -3.67 9.29 71.98 0.67 -3.00 16 27 N -0.41 -9.19 9.62 -172.25 -1.66 -10.85 16 28 C 0.07 1.07 6.78 42.69 0.29 1.36 16 29 C -0.10 -0.75 9.77 71.23 0.70 -0.05 16 30 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.12 -0.02 5.93 -2.39 -0.01 -0.03 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.42 6.80 9.06 -74.06 -0.67 6.13 16 34 H 0.42 10.64 7.82 -92.71 -0.72 9.91 16 35 H 0.06 1.86 7.93 -2.39 -0.02 1.84 16 36 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.02 0.73 7.68 -2.38 -0.02 0.71 16 38 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 40 H -0.01 -0.46 8.04 -2.39 -0.02 -0.48 16 41 H 0.07 3.96 5.86 -2.39 -0.01 3.95 16 42 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.12 0.13 5.93 -2.38 -0.01 0.11 16 Total: -1.00 -78.26 383.59 -1.26 -79.52 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.38 Total: 18.25 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 7.03 Total: 23.65 kcal Atomic # 7 Polarization: -129.10 SS G_CDS: -9.42 Total: -138.52 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.51 Total: -31.24 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -78.26 -1.26 -79.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092720302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.729 kcal (2) G-P(sol) polarization free energy of solvation -78.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds