Wall clock time and date at job start Tue Mar 31 2020 18:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.35846 * 126.45817 * 2 1 4 4 H 0.96993 * 124.91701 * 0.02562 * 3 2 1 5 5 N 1.28455 * 110.16359 * 179.97438 * 3 2 1 6 6 C 1.31932 * 110.21761 * 0.02562 * 5 3 2 7 7 C 1.47523 * 126.46166 * 180.02562 * 6 5 3 8 8 O 1.21595 * 119.99906 * 179.97438 * 7 6 5 9 9 N 1.34769 * 120.00023 * 0.02562 * 7 6 5 10 10 C 1.46506 * 120.00136 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47357 * 179.97438 * 10 9 7 12 12 C 1.53514 * 111.15779 * 299.11553 * 11 10 9 13 13 C 1.54188 * 106.58748 * 240.87924 * 12 11 10 14 14 C 1.54743 * 104.34706 * 335.43070 * 13 12 11 15 15 C 1.54669 * 111.22862 * 180.02562 * 11 10 9 16 16 H 1.08998 * 112.39840 * 19.48600 * 15 11 10 17 17 N 1.47257 * 106.09785 * 256.40626 * 15 11 10 18 18 C 1.36942 * 126.51834 * 150.11150 * 17 15 11 19 19 H 1.08000 * 119.99863 * 344.39208 * 18 17 15 20 20 C 1.38803 * 120.00346 * 164.39496 * 18 17 15 21 21 N 1.31623 * 119.99952 * 351.67033 * 20 18 17 22 22 Si 1.86804 * 120.00413 * 171.67163 * 20 18 17 23 23 H 1.48493 * 109.47091 * 94.97556 * 22 20 18 24 24 H 1.48503 * 109.47167 * 214.97982 * 22 20 18 25 25 H 1.48504 * 109.46509 * 334.97784 * 22 20 18 26 26 C 1.47153 * 106.96314 * 330.07260 * 17 15 11 27 27 C 1.53676 * 111.17126 * 62.60201 * 11 10 9 28 28 C 1.35789 * 126.46218 * 179.97438 * 2 1 3 29 29 O 1.36076 * 127.26469 * 359.76596 * 28 2 1 30 30 H 1.09009 * 109.46566 * 270.03466 * 1 2 3 31 31 H 1.08997 * 109.47703 * 30.03298 * 1 2 3 32 32 H 1.09006 * 109.47254 * 150.04057 * 1 2 3 33 33 H 0.97002 * 120.00596 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.46826 * 300.00029 * 10 9 7 35 35 H 1.09000 * 109.46635 * 59.99830 * 10 9 7 36 36 H 1.09000 * 110.04297 * 0.98441 * 12 11 10 37 37 H 1.09001 * 110.04081 * 122.43598 * 12 11 10 38 38 H 1.09007 * 110.79729 * 216.50220 * 13 12 11 39 39 H 1.08995 * 110.10885 * 94.02327 * 13 12 11 40 40 H 1.09006 * 110.65022 * 278.62911 * 14 13 12 41 41 H 1.09000 * 110.65001 * 155.53490 * 14 13 12 42 42 H 0.96999 * 120.00332 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.08994 * 150.06544 * 26 17 15 44 44 H 1.08998 * 110.09210 * 271.59773 * 26 17 15 45 45 H 1.09000 * 110.22541 * 241.06135 * 27 11 10 46 46 H 1.09005 * 110.23207 * 3.01767 * 27 11 10 47 47 H 0.96697 * 114.00211 * 90.01068 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0926 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5471 0.7322 0.0005 6 6 3.6374 -0.5840 0.0004 7 6 4.8811 -1.3775 0.0014 8 8 4.8272 -2.5923 0.0016 9 7 6.0769 -0.7560 0.0031 10 6 7.3120 -1.5440 0.0047 11 6 8.5179 -0.6023 0.0059 12 6 8.5272 0.2875 -1.2450 13 6 9.8308 -0.0330 -2.0035 14 6 10.7853 -0.5756 -0.9131 15 6 9.8466 -1.3939 0.0069 16 1 9.7175 -2.4226 -0.3295 17 7 10.3664 -1.3173 1.3826 18 6 11.1372 -2.2555 2.0159 19 1 11.2129 -3.2542 1.6118 20 6 11.8210 -1.9231 3.1771 21 7 11.8635 -0.6708 3.5801 22 14 12.6811 -3.2527 4.1679 23 1 14.1095 -3.3221 3.7681 24 1 12.5869 -2.9311 5.6146 25 1 12.0303 -4.5622 3.9085 26 6 9.9009 -0.0406 1.9470 27 6 8.5479 0.2593 1.2780 28 6 2.3139 -1.0921 0.0005 29 8 1.9326 -2.3983 0.0055 30 1 -0.3633 0.0006 1.0278 31 1 -0.3634 0.8896 -0.5143 32 1 -0.3634 -0.8904 -0.5132 33 1 6.1200 0.2130 0.0041 34 1 7.3407 -2.1728 0.8946 35 1 7.3431 -2.1725 -0.8854 36 1 7.6572 0.0701 -1.8646 37 1 8.5271 1.3385 -0.9559 38 1 10.2445 0.8665 -2.4596 39 1 9.6458 -0.7938 -2.7618 40 1 11.2451 0.2447 -0.3618 41 1 11.5471 -1.2184 -1.3543 42 1 12.3417 -0.4383 4.3914 43 1 9.7732 -0.1324 3.0256 44 1 10.6150 0.7513 1.7209 45 1 8.4812 1.3160 1.0191 46 1 7.7292 -0.0194 1.9415 47 1 1.8197 -2.7785 -0.8764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094394635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:39 Heat of formation + Delta-G solvation = 12.875928 kcal Electronic energy + Delta-G solvation = -29439.197211 eV Core-core repulsion = 25431.020482 eV Total energy + Delta-G solvation = -4008.176730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.94382 -39.87349 -38.67050 -37.36752 -34.65188 -33.81588 -32.97789 -31.63521 -31.27500 -30.14740 -28.08053 -27.16512 -26.75020 -25.01681 -23.69729 -23.06588 -21.58383 -20.46405 -20.36409 -19.44290 -18.52781 -18.22633 -17.41028 -17.13166 -16.68509 -16.16105 -15.42583 -15.02495 -14.82431 -14.49467 -14.41459 -14.09050 -13.96591 -13.60054 -13.56231 -13.39969 -13.29217 -12.96303 -12.68465 -12.49580 -11.92641 -11.82919 -11.59747 -11.14091 -10.87165 -10.75280 -10.62598 -10.56588 -10.51845 -10.21139 -10.05792 -10.01272 -9.98525 -9.67697 -9.61466 -9.57706 -9.54044 -9.00410 -8.76095 -8.51860 -6.74422 -5.72065 -3.05368 1.32873 1.63344 2.41810 3.24153 3.40822 3.42825 3.49115 3.51261 4.01674 4.29779 4.39011 4.53183 4.71536 5.01025 5.02985 5.04224 5.15234 5.21800 5.34893 5.42096 5.52733 5.61879 5.68612 5.80392 5.85316 5.97586 6.00515 6.14147 6.17668 6.18404 6.23550 6.39444 6.47457 6.51211 6.54575 6.58251 6.72795 6.74971 6.86217 6.95508 7.16365 7.40643 7.48951 7.52148 7.67944 7.76232 7.82400 8.32373 8.35636 9.22894 9.84934 10.57333 11.41686 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.002821 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.379563 B = 9922.869564 C =10599.460829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.014 4.014 3 N -0.375 5.375 4 H 0.450 0.550 5 N -0.243 5.243 6 C -0.024 4.024 7 C 0.596 3.404 8 O -0.526 6.526 9 N -0.708 5.708 10 C 0.141 3.859 11 C -0.085 4.085 12 C -0.110 4.110 13 C -0.123 4.123 14 C -0.134 4.134 15 C 0.168 3.832 16 H 0.065 0.935 17 N -0.586 5.586 18 C -0.227 4.227 19 H 0.075 0.925 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.170 3.830 27 C -0.133 4.133 28 C 0.046 3.954 29 O -0.451 6.451 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.405 0.595 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.252 0.748 43 H 0.069 0.931 44 H 0.022 0.978 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.760 6.709 -11.690 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 N -0.092 5.092 4 H 0.295 0.705 5 N -0.080 5.080 6 C -0.186 4.186 7 C 0.379 3.621 8 O -0.400 6.400 9 N -0.359 5.359 10 C 0.019 3.981 11 C -0.087 4.087 12 C -0.148 4.148 13 C -0.161 4.161 14 C -0.175 4.175 15 C 0.059 3.941 16 H 0.083 0.917 17 N -0.308 5.308 18 C -0.356 4.356 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.044 3.956 27 C -0.172 4.172 28 C -0.010 4.010 29 O -0.256 6.256 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.240 0.760 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.040 0.960 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -20.936 6.704 -10.825 24.503 hybrid contribution -0.076 -0.267 0.111 0.299 sum -21.012 6.437 -10.713 24.448 Atomic orbital electron populations 1.20282 0.85988 1.03791 1.03596 1.21560 0.95409 0.87455 1.09581 1.43048 1.02855 1.09241 1.54076 0.70514 1.73629 1.01635 1.14234 1.18489 1.22513 0.95623 0.89928 1.10521 1.16776 0.81590 0.86467 0.77251 1.90830 1.86621 1.12622 1.49925 1.45925 1.05266 1.10963 1.73753 1.21445 0.81065 0.93306 1.02327 1.21978 0.95302 0.95841 0.95559 1.22205 0.97685 0.99050 0.95895 1.22277 0.95915 0.99983 0.97913 1.23031 0.97862 1.00363 0.96199 1.21675 0.89416 0.95860 0.87165 0.91660 1.44501 1.58572 1.19778 1.07907 1.19008 1.20245 0.90638 1.05680 0.90751 1.24861 0.99389 0.96169 0.99738 1.69947 1.46162 1.15362 1.24717 0.86165 0.79383 0.81064 0.79544 1.21658 1.21722 1.20509 1.21076 0.88817 0.87650 0.98014 1.22725 1.01223 0.97500 0.95749 1.17798 0.89058 0.85125 1.08999 1.84922 1.88708 1.19117 1.32824 0.90126 0.91011 0.89539 0.75996 0.90705 0.91645 0.92340 0.91962 0.92622 0.92516 0.91120 0.92667 0.93796 0.91231 0.95990 0.92488 0.92595 0.75944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.44 36.00 0.38 0.03 16 2 C -0.01 -0.12 7.27 -81.69 -0.59 -0.71 16 3 N -0.37 -2.90 6.87 33.71 0.23 -2.67 16 4 H 0.45 1.64 8.96 -190.46 -1.71 -0.07 16 5 N -0.24 -2.76 11.91 33.45 0.40 -2.36 16 6 C -0.02 -0.33 7.13 -82.69 -0.59 -0.92 16 7 C 0.60 9.66 7.82 -12.48 -0.10 9.57 16 8 O -0.53 -10.17 16.53 3.10 0.05 -10.12 16 9 N -0.71 -10.59 4.84 -61.35 -0.30 -10.89 16 10 C 0.14 2.36 4.27 -4.04 -0.02 2.34 16 11 C -0.08 -1.44 0.65 -153.01 -0.10 -1.54 16 12 C -0.11 -1.58 5.62 -25.84 -0.15 -1.72 16 13 C -0.12 -1.80 6.83 -25.19 -0.17 -1.97 16 14 C -0.13 -2.49 6.37 -24.85 -0.16 -2.65 16 15 C 0.17 3.40 3.59 -65.68 -0.24 3.17 16 16 H 0.07 1.33 7.95 -51.93 -0.41 0.91 16 17 N -0.59 -14.63 2.98 -161.97 -0.48 -15.11 16 18 C -0.23 -6.30 10.27 -15.06 -0.15 -6.46 16 19 H 0.07 2.02 7.84 -52.49 -0.41 1.60 16 20 C 0.00 -0.13 5.39 -17.43 -0.09 -0.22 16 21 N -0.92 -26.93 10.89 55.49 0.60 -26.32 16 22 Si 0.91 22.33 29.56 -169.99 -5.03 17.31 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.17 4.05 5.04 -3.22 -0.02 4.04 16 27 C -0.13 -2.47 5.81 -25.92 -0.15 -2.62 16 28 C 0.05 0.55 7.28 -39.11 -0.28 0.27 16 29 O -0.45 -5.30 13.19 -22.16 -0.29 -5.59 16 30 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.41 5.46 7.58 -40.82 -0.31 5.15 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.76 7.47 -51.93 -0.39 0.37 16 37 H 0.06 0.85 7.10 -51.93 -0.37 0.48 16 38 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.47 7.28 -51.93 -0.38 1.10 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.07 1.88 6.87 -51.93 -0.36 1.52 16 44 H 0.02 0.57 7.71 -51.93 -0.40 0.17 16 45 H 0.06 0.94 7.11 -51.93 -0.37 0.57 16 46 H 0.06 1.04 7.62 -51.93 -0.40 0.65 16 47 H 0.39 2.82 9.07 45.56 0.41 3.24 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -35.10 377.88 -9.15 -44.25 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.60 Total: 5.20 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.43 Total: 0.61 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.46 Total: -57.35 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.24 Total: -15.71 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.10 -9.15 -44.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094394635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.126 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds