Wall clock time and date at job start Tue Mar 31 2020 18:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.35846 * 126.45817 * 2 1 4 4 H 0.96993 * 124.91701 * 0.02562 * 3 2 1 5 5 N 1.28455 * 110.16359 * 179.97438 * 3 2 1 6 6 C 1.31932 * 110.21761 * 0.02562 * 5 3 2 7 7 C 1.47523 * 126.46166 * 180.02562 * 6 5 3 8 8 O 1.21595 * 119.99906 * 179.97438 * 7 6 5 9 9 N 1.34769 * 120.00023 * 0.02562 * 7 6 5 10 10 C 1.46506 * 120.00136 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47357 * 179.97438 * 10 9 7 12 12 C 1.53514 * 111.15779 * 299.11553 * 11 10 9 13 13 C 1.54188 * 106.58748 * 240.87924 * 12 11 10 14 14 C 1.54743 * 104.34706 * 335.43070 * 13 12 11 15 15 C 1.54669 * 111.22862 * 180.02562 * 11 10 9 16 16 H 1.08998 * 112.39840 * 19.48600 * 15 11 10 17 17 N 1.47257 * 106.09785 * 256.40626 * 15 11 10 18 18 C 1.36942 * 126.51834 * 150.11150 * 17 15 11 19 19 H 1.08000 * 119.99863 * 344.39208 * 18 17 15 20 20 C 1.38803 * 120.00346 * 164.39496 * 18 17 15 21 21 N 1.31623 * 119.99952 * 351.67033 * 20 18 17 22 22 Si 1.86804 * 120.00413 * 171.67163 * 20 18 17 23 23 H 1.48493 * 109.47091 * 94.97556 * 22 20 18 24 24 H 1.48503 * 109.47167 * 214.97982 * 22 20 18 25 25 H 1.48504 * 109.46509 * 334.97784 * 22 20 18 26 26 C 1.47153 * 106.96314 * 330.07260 * 17 15 11 27 27 C 1.53676 * 111.17126 * 62.60201 * 11 10 9 28 28 C 1.35789 * 126.46218 * 179.97438 * 2 1 3 29 29 O 1.36076 * 127.26469 * 359.76596 * 28 2 1 30 30 H 1.09009 * 109.46566 * 270.03466 * 1 2 3 31 31 H 1.08997 * 109.47703 * 30.03298 * 1 2 3 32 32 H 1.09006 * 109.47254 * 150.04057 * 1 2 3 33 33 H 0.97002 * 120.00596 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.46826 * 300.00029 * 10 9 7 35 35 H 1.09000 * 109.46635 * 59.99830 * 10 9 7 36 36 H 1.09000 * 110.04297 * 0.98441 * 12 11 10 37 37 H 1.09001 * 110.04081 * 122.43598 * 12 11 10 38 38 H 1.09007 * 110.79729 * 216.50220 * 13 12 11 39 39 H 1.08995 * 110.10885 * 94.02327 * 13 12 11 40 40 H 1.09006 * 110.65022 * 278.62911 * 14 13 12 41 41 H 1.09000 * 110.65001 * 155.53490 * 14 13 12 42 42 H 0.96999 * 120.00332 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.08994 * 150.06544 * 26 17 15 44 44 H 1.08998 * 110.09210 * 271.59773 * 26 17 15 45 45 H 1.09000 * 110.22541 * 241.06135 * 27 11 10 46 46 H 1.09005 * 110.23207 * 3.01767 * 27 11 10 47 47 H 0.96697 * 114.00211 * 90.01068 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0926 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5471 0.7322 0.0005 6 6 3.6374 -0.5840 0.0004 7 6 4.8811 -1.3775 0.0014 8 8 4.8272 -2.5923 0.0016 9 7 6.0769 -0.7560 0.0031 10 6 7.3120 -1.5440 0.0047 11 6 8.5179 -0.6023 0.0059 12 6 8.5272 0.2875 -1.2450 13 6 9.8308 -0.0330 -2.0035 14 6 10.7853 -0.5756 -0.9131 15 6 9.8466 -1.3939 0.0069 16 1 9.7175 -2.4226 -0.3295 17 7 10.3664 -1.3173 1.3826 18 6 11.1372 -2.2555 2.0159 19 1 11.2129 -3.2542 1.6118 20 6 11.8210 -1.9231 3.1771 21 7 11.8635 -0.6708 3.5801 22 14 12.6811 -3.2527 4.1679 23 1 14.1095 -3.3221 3.7681 24 1 12.5869 -2.9311 5.6146 25 1 12.0303 -4.5622 3.9085 26 6 9.9009 -0.0406 1.9470 27 6 8.5479 0.2593 1.2780 28 6 2.3139 -1.0921 0.0005 29 8 1.9326 -2.3983 0.0055 30 1 -0.3633 0.0006 1.0278 31 1 -0.3634 0.8896 -0.5143 32 1 -0.3634 -0.8904 -0.5132 33 1 6.1200 0.2130 0.0041 34 1 7.3407 -2.1728 0.8946 35 1 7.3431 -2.1725 -0.8854 36 1 7.6572 0.0701 -1.8646 37 1 8.5271 1.3385 -0.9559 38 1 10.2445 0.8665 -2.4596 39 1 9.6458 -0.7938 -2.7618 40 1 11.2451 0.2447 -0.3618 41 1 11.5471 -1.2184 -1.3543 42 1 12.3417 -0.4383 4.3914 43 1 9.7732 -0.1324 3.0256 44 1 10.6150 0.7513 1.7209 45 1 8.4812 1.3160 1.0191 46 1 7.7292 -0.0194 1.9415 47 1 1.8197 -2.7785 -0.8764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094394635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:39 Heat of formation + Delta-G solvation = -14.406491 kcal Electronic energy + Delta-G solvation = -29440.380266 eV Core-core repulsion = 25431.020482 eV Total energy + Delta-G solvation = -4009.359784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.72748 -41.32266 -40.03150 -38.19159 -36.27625 -35.34347 -33.70724 -33.38744 -32.22483 -31.69983 -29.58211 -28.45665 -27.76659 -26.28973 -25.56180 -24.28094 -22.34601 -22.17141 -21.65182 -20.85068 -19.71816 -19.27631 -18.90573 -18.17180 -17.97750 -16.99676 -16.89879 -16.68747 -16.19798 -16.03736 -15.52216 -15.19755 -15.18646 -15.12481 -14.78601 -14.60910 -14.23957 -14.09571 -13.73412 -13.61372 -13.38844 -13.29603 -12.86609 -12.74920 -12.69906 -12.51714 -12.19277 -12.02364 -11.83064 -11.68080 -11.60350 -11.55460 -11.45543 -11.39557 -11.09551 -11.02675 -10.61692 -10.48476 -10.04181 -9.73153 -8.79165 -7.88233 -5.21972 0.40000 0.86736 1.44040 1.45406 1.54930 1.76398 2.13429 2.26604 2.49453 3.12102 3.30424 3.53819 3.66794 3.70232 3.72188 3.75831 3.95647 4.03717 4.30783 4.39216 4.43859 4.48041 4.55428 4.61831 4.66173 4.75855 4.78401 4.85310 4.88978 4.96137 4.99650 5.08095 5.12591 5.18871 5.21738 5.26368 5.36466 5.40941 5.47905 5.54248 5.61618 5.65307 5.79970 6.01033 6.25356 6.44804 6.75591 6.82492 7.10148 7.15258 7.78612 8.50478 9.24826 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.002821 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.379563 B = 9922.869564 C =10599.460829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.011 3.989 3 N -0.351 5.351 4 H 0.469 0.531 5 N -0.246 5.246 6 C -0.058 4.058 7 C 0.594 3.406 8 O -0.567 6.567 9 N -0.697 5.697 10 C 0.153 3.847 11 C -0.070 4.070 12 C -0.102 4.102 13 C -0.110 4.110 14 C -0.130 4.130 15 C 0.155 3.845 16 H 0.061 0.939 17 N -0.608 5.608 18 C -0.237 4.237 19 H 0.074 0.926 20 C -0.061 4.061 21 N -0.945 5.945 22 Si 0.971 3.029 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.271 1.271 26 C 0.179 3.821 27 C -0.119 4.119 28 C 0.015 3.985 29 O -0.468 6.468 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.415 0.585 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.247 0.753 43 H 0.028 0.972 44 H -0.003 1.003 45 H 0.086 0.914 46 H 0.052 0.948 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.379 8.160 -13.714 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 N -0.072 5.072 4 H 0.319 0.681 5 N -0.085 5.085 6 C -0.218 4.218 7 C 0.379 3.621 8 O -0.444 6.444 9 N -0.349 5.349 10 C 0.029 3.971 11 C -0.072 4.072 12 C -0.140 4.140 13 C -0.148 4.148 14 C -0.170 4.170 15 C 0.047 3.953 16 H 0.079 0.921 17 N -0.330 5.330 18 C -0.366 4.366 19 H 0.092 0.908 20 C -0.255 4.255 21 N -0.594 5.594 22 Si 0.800 3.200 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.196 1.196 26 C 0.053 3.947 27 C -0.158 4.158 28 C -0.041 4.041 29 O -0.276 6.276 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.252 0.748 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.105 0.895 46 H 0.071 0.929 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -23.574 8.193 -12.898 28.093 hybrid contribution 0.658 -0.701 0.723 1.203 sum -22.916 7.492 -12.175 27.009 Atomic orbital electron populations 1.20484 0.82800 1.05694 1.04613 1.22014 0.96923 0.86118 1.06538 1.43202 1.01851 1.10366 1.51787 0.68091 1.73540 1.03309 1.13049 1.18602 1.22216 0.95126 0.90872 1.13596 1.17155 0.82499 0.86256 0.76147 1.90794 1.87320 1.14468 1.51858 1.45744 1.04459 1.11195 1.73455 1.21167 0.81845 0.93116 1.00982 1.21821 0.93493 0.95502 0.96390 1.22183 0.98466 0.99044 0.94316 1.22227 0.94564 1.01244 0.96803 1.22857 0.98142 0.99087 0.96921 1.21975 0.91401 0.96672 0.85245 0.92079 1.44729 1.58535 1.19543 1.10178 1.19343 1.19986 0.91353 1.05962 0.90784 1.25629 1.00770 0.98148 1.00965 1.70132 1.47271 1.17051 1.24897 0.85172 0.78341 0.78881 0.77613 1.21212 1.22105 1.19638 1.20843 0.91026 0.86759 0.96082 1.22583 0.97581 0.99584 0.96010 1.18118 0.89130 0.85951 1.10870 1.84866 1.88628 1.19643 1.34433 0.89362 0.87880 0.88913 0.74833 0.94217 0.91008 0.90033 0.90427 0.90489 0.90750 0.93886 0.93123 0.94427 0.95369 0.98500 0.89520 0.92919 0.74315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.44 71.23 0.74 0.36 16 2 C 0.01 0.15 7.27 41.37 0.30 0.45 16 3 N -0.35 -4.32 6.87 -47.26 -0.32 -4.65 16 4 H 0.47 1.55 8.96 -220.01 -1.97 -0.42 16 5 N -0.25 -5.06 11.91 -48.08 -0.57 -5.63 16 6 C -0.06 -1.54 7.13 42.45 0.30 -1.24 16 7 C 0.59 19.26 7.82 86.69 0.68 19.93 16 8 O -0.57 -22.49 16.53 -1.93 -0.03 -22.52 16 9 N -0.70 -20.28 4.84 -466.27 -2.26 -22.54 16 10 C 0.15 5.07 4.27 86.38 0.37 5.44 16 11 C -0.07 -2.32 0.65 -51.21 -0.03 -2.35 16 12 C -0.10 -2.58 5.62 31.17 0.18 -2.41 16 13 C -0.11 -2.89 6.83 31.59 0.22 -2.67 16 14 C -0.13 -4.76 6.37 31.81 0.20 -4.56 16 15 C 0.15 6.33 3.59 46.04 0.17 6.49 16 16 H 0.06 2.52 7.95 -2.39 -0.02 2.50 16 17 N -0.61 -31.52 2.98 -666.34 -1.98 -33.50 16 18 C -0.24 -13.64 10.27 84.03 0.86 -12.78 16 19 H 0.07 4.14 7.84 -2.91 -0.02 4.12 16 20 C -0.06 -3.60 5.39 84.86 0.46 -3.14 16 21 N -0.95 -58.13 10.89 21.65 0.24 -57.89 16 22 Si 0.97 47.35 29.56 68.60 2.03 49.38 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 26 C 0.18 8.89 5.04 86.55 0.44 9.33 16 27 C -0.12 -4.39 5.81 31.12 0.18 -4.21 16 28 C 0.02 0.34 7.28 22.57 0.16 0.51 16 29 O -0.47 -10.84 13.19 -92.33 -1.22 -12.06 16 30 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.41 10.37 7.58 -92.71 -0.70 9.67 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.08 1.77 7.47 -2.39 -0.02 1.75 16 37 H 0.08 1.79 7.10 -2.39 -0.02 1.77 16 38 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.81 7.28 -2.38 -0.02 1.79 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.03 1.60 6.87 -2.39 -0.02 1.59 16 44 H 0.00 -0.16 7.71 -2.39 -0.02 -0.18 16 45 H 0.09 2.69 7.11 -2.39 -0.02 2.67 16 46 H 0.05 1.98 7.62 -2.38 -0.02 1.96 16 47 H 0.40 5.78 9.07 -74.06 -0.67 5.11 16 Total: -1.00 -81.51 377.88 -1.22 -82.73 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -2.32 Total: 17.52 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.22 Total: 9.16 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -4.90 Total: -124.21 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.25 Total: -34.58 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -81.51 -1.22 -82.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094394635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.327 kcal (2) G-P(sol) polarization free energy of solvation -81.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds