Wall clock time and date at job start Tue Mar 31 2020 18:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35343 * 116.99940 * 2 1 4 4 C 1.38997 * 126.40779 * 266.67453 * 3 2 1 5 5 C 1.46923 * 126.49333 * 0.02562 * 4 3 2 6 6 O 1.21668 * 120.00065 * 269.71149 * 5 4 3 7 7 N 1.34782 * 120.00154 * 89.71241 * 5 4 3 8 8 C 1.46493 * 120.00110 * 179.97438 * 7 5 4 9 9 H 1.09007 * 110.68709 * 32.01697 * 8 7 5 10 10 C 1.55474 * 110.76069 * 268.95427 * 8 7 5 11 11 C 1.55842 * 103.33178 * 241.51837 * 10 8 7 12 12 H 1.09002 * 116.12895 * 159.23608 * 11 10 8 13 13 C 1.55392 * 105.04336 * 288.04179 * 11 10 8 14 14 C 1.54850 * 103.48801 * 72.07263 * 13 11 10 15 15 C 1.55845 * 103.44412 * 359.87516 * 14 13 11 16 16 H 1.09004 * 115.56031 * 158.81237 * 15 14 13 17 17 N 1.50234 * 101.04881 * 33.02351 * 11 10 8 18 18 C 1.36936 * 130.83905 * 126.06984 * 17 11 10 19 19 H 1.08003 * 119.99956 * 179.65984 * 18 17 11 20 20 C 1.38811 * 120.00048 * 359.66521 * 18 17 11 21 21 N 1.31613 * 119.99810 * 359.71966 * 20 18 17 22 22 Si 1.86800 * 120.00088 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47181 * 59.99439 * 22 20 18 24 24 H 1.48501 * 109.47338 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46982 * 299.99430 * 22 20 18 26 26 C 1.41459 * 107.01165 * 179.75688 * 4 3 2 27 27 C 1.50693 * 125.93466 * 180.21947 * 26 4 3 28 28 N 1.30316 * 108.13446 * 0.24277 * 26 4 3 29 29 N 1.34660 * 126.40840 * 86.84971 * 3 2 1 30 30 C 1.46502 * 125.74112 * 0.02562 * 29 3 2 31 31 H 1.08993 * 109.46992 * 61.80875 * 1 2 3 32 32 H 1.09002 * 109.46774 * 181.80808 * 1 2 3 33 33 H 1.08995 * 109.46641 * 301.80349 * 1 2 3 34 34 H 0.97002 * 119.99438 * 359.97438 * 7 5 4 35 35 H 1.08998 * 110.60928 * 123.09701 * 10 8 7 36 36 H 1.09008 * 110.75643 * 0.02562 * 10 8 7 37 37 H 1.08998 * 110.71300 * 313.51831 * 13 11 10 38 38 H 1.08995 * 110.49649 * 190.52627 * 13 11 10 39 39 H 1.08996 * 110.62499 * 241.38902 * 14 13 11 40 40 H 1.08996 * 110.76116 * 118.42218 * 14 13 11 41 41 H 0.97002 * 120.00124 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47223 * 90.00134 * 27 26 4 43 43 H 1.08999 * 109.47750 * 210.00363 * 27 26 4 44 44 H 1.09004 * 109.47054 * 330.00335 * 27 26 4 45 45 H 1.09009 * 109.46489 * 275.42988 * 30 29 3 46 46 H 1.08998 * 109.47684 * 35.42615 * 30 29 3 47 47 H 1.08994 * 109.47380 * 155.43659 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.4758 1.9115 -1.1168 5 6 2.3518 1.4899 -2.5187 6 8 3.2399 0.8419 -3.0399 7 7 1.2542 1.8209 -3.2275 8 6 1.1309 1.4010 -4.6255 9 1 1.6290 0.4447 -4.7858 10 6 1.7072 2.4850 -5.5795 11 6 0.4745 2.9006 -6.4376 12 1 0.5364 3.8723 -6.9276 13 6 0.2143 1.6936 -7.3809 14 6 -0.3622 0.6126 -6.4337 15 6 -0.3683 1.3156 -5.0429 16 1 -1.0488 0.8914 -4.3044 17 7 -0.6379 2.7391 -5.4408 18 6 -1.6038 3.6170 -5.0268 19 1 -2.3332 3.3102 -4.2917 20 6 -1.6456 4.9013 -5.5520 21 7 -0.7535 5.2769 -6.4438 22 14 -2.9629 6.0991 -4.9867 23 1 -2.8410 6.3140 -3.5225 24 1 -2.7903 7.3941 -5.6928 25 1 -4.3042 5.5416 -5.2953 26 6 3.0522 3.1154 -0.6481 27 6 3.6531 4.2001 -1.5043 28 7 2.9737 3.1232 0.6526 29 7 2.3533 1.9451 1.0821 30 6 2.0816 1.5795 2.4745 31 1 -0.3633 0.4855 -0.9057 32 1 -0.3633 -1.0272 0.0324 33 1 -0.3632 0.5416 0.8734 34 1 0.5460 2.3372 -2.8118 35 1 2.4899 2.0639 -6.2104 36 1 2.0859 3.3360 -5.0132 37 1 1.1445 1.3507 -7.8338 38 1 -0.5128 1.9588 -8.1484 39 1 0.2822 -0.2663 -6.4169 40 1 -1.3748 0.3394 -6.7302 41 1 -0.7825 6.1744 -6.8105 42 1 2.8817 4.9232 -1.7692 43 1 4.4469 4.7020 -0.9509 44 1 4.0656 3.7599 -2.4122 45 1 1.0632 1.8691 2.7341 46 1 2.1951 0.5023 2.5962 47 1 2.7839 2.0953 3.1293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097962156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:43 Heat of formation + Delta-G solvation = 56.197245 kcal Electronic energy + Delta-G solvation = -30370.865591 eV Core-core repulsion = 26364.567415 eV Total energy + Delta-G solvation = -4006.298177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59009 -39.53710 -38.33400 -38.03632 -34.02584 -33.60935 -32.51075 -30.37253 -29.51756 -29.11430 -28.75004 -27.89906 -27.10438 -25.79576 -24.20088 -22.64052 -21.04942 -20.47496 -19.78264 -19.58700 -18.68635 -17.89197 -16.99456 -16.66598 -16.61055 -16.02257 -15.69286 -14.90641 -14.83621 -14.60366 -14.14224 -13.99548 -13.66500 -13.61187 -13.36329 -13.28200 -12.93118 -12.69944 -12.51539 -12.23851 -12.02316 -11.90048 -11.79821 -11.36087 -11.18052 -11.10952 -10.95110 -10.90003 -10.49926 -10.34745 -10.32812 -10.12916 -9.90962 -9.71146 -9.26095 -9.23202 -9.14415 -8.96215 -8.55896 -8.37446 -6.94779 -5.74815 -3.13835 1.31281 2.04601 2.40102 2.97713 3.33884 3.34964 3.39591 3.41369 3.79340 4.35298 4.39962 4.78710 4.85103 4.85787 5.00502 5.08648 5.14151 5.14724 5.29394 5.33051 5.39467 5.52506 5.66055 5.72308 5.72847 5.85770 5.89063 5.91337 6.00977 6.07227 6.15524 6.17762 6.34104 6.45210 6.48019 6.53408 6.62739 6.77645 6.85422 6.97906 7.16632 7.21551 7.36351 7.46001 7.51434 7.79676 8.09157 8.17743 8.72372 9.06664 9.70008 10.51588 11.33959 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.004135 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.518352 B = 6769.991974 C = 7527.621149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.305 6.305 3 C 0.287 3.713 4 C -0.275 4.275 5 C 0.597 3.403 6 O -0.544 6.544 7 N -0.696 5.696 8 C 0.128 3.872 9 H 0.080 0.920 10 C -0.142 4.142 11 C 0.154 3.846 12 H 0.153 0.847 13 C -0.139 4.139 14 C -0.128 4.128 15 C 0.126 3.874 16 H 0.085 0.915 17 N -0.591 5.591 18 C -0.215 4.215 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.913 3.087 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.287 1.287 26 C 0.126 3.874 27 C -0.079 4.079 28 N -0.281 5.281 29 N -0.372 5.372 30 C 0.097 3.903 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.049 0.951 34 H 0.401 0.599 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.254 0.746 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 -7.737 12.926 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.214 6.214 3 C 0.116 3.884 4 C -0.290 4.290 5 C 0.381 3.619 6 O -0.422 6.422 7 N -0.345 5.345 8 C 0.022 3.978 9 H 0.098 0.902 10 C -0.182 4.182 11 C 0.047 3.953 12 H 0.170 0.830 13 C -0.178 4.178 14 C -0.168 4.168 15 C 0.017 3.983 16 H 0.103 0.897 17 N -0.311 5.311 18 C -0.343 4.343 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.744 3.256 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.213 1.213 26 C -0.040 4.040 27 C -0.138 4.138 28 N -0.106 5.106 29 N -0.161 5.161 30 C -0.044 4.044 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.236 0.764 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.094 -7.552 13.712 16.181 hybrid contribution -1.496 0.349 0.041 1.536 sum 2.598 -7.204 13.753 15.742 Atomic orbital electron populations 1.23232 0.77016 1.04335 1.01824 1.86030 1.21271 1.21019 1.93119 1.19132 0.97392 0.85529 0.86389 1.19964 1.17048 0.98516 0.93498 1.17009 0.82187 0.78898 0.83824 1.90758 1.40064 1.39899 1.71429 1.46002 1.20386 1.55132 1.12984 1.22755 0.98318 0.97387 0.79326 0.90174 1.23548 0.98812 0.97534 0.98302 1.23659 0.84486 0.98491 0.88647 0.83035 1.22997 0.98865 0.97680 0.98305 1.22887 0.99848 0.97086 0.96999 1.23151 0.92250 0.88041 0.94860 0.89661 1.46521 1.32112 1.06911 1.45599 1.18918 1.04951 0.91494 1.18890 0.90628 1.24670 0.99073 0.97254 0.99397 1.69447 1.36145 1.18762 1.32221 0.86180 0.81072 0.80525 0.77839 1.21376 1.21571 1.21350 1.22203 0.96329 0.94456 0.91029 1.20321 1.00955 0.94806 0.97713 1.77135 1.20231 1.00676 1.12605 1.48706 1.46666 1.14372 1.06378 1.21915 1.02718 1.02042 0.77724 0.91965 0.87560 0.93182 0.76416 0.92810 0.92088 0.93255 0.92704 0.92994 0.92539 0.93489 0.89402 0.90313 0.89822 0.90642 0.89334 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.13 101.05 1.12 1.42 16 2 O -0.30 -4.05 10.46 -17.72 -0.19 -4.24 16 3 C 0.29 4.24 7.03 -16.03 -0.11 4.12 16 4 C -0.27 -4.58 5.89 -104.87 -0.62 -5.20 16 5 C 0.60 11.07 7.34 -12.74 -0.09 10.97 16 6 O -0.54 -11.81 16.76 5.22 0.09 -11.72 16 7 N -0.70 -12.44 5.09 -52.29 -0.27 -12.70 16 8 C 0.13 2.41 2.82 -65.10 -0.18 2.22 16 9 H 0.08 1.52 7.23 -51.92 -0.38 1.15 16 10 C -0.14 -2.86 6.25 -23.90 -0.15 -3.01 16 11 C 0.15 3.43 4.69 -63.05 -0.30 3.14 16 12 H 0.15 3.89 5.52 -51.93 -0.29 3.61 16 13 C -0.14 -2.71 6.42 -24.49 -0.16 -2.87 16 14 C -0.13 -2.30 6.44 -24.24 -0.16 -2.45 16 15 C 0.13 2.40 5.06 -62.79 -0.32 2.08 16 16 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 17 N -0.59 -13.68 2.99 -146.08 -0.44 -14.11 16 18 C -0.21 -5.49 10.59 -15.06 -0.16 -5.64 16 19 H 0.08 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -25.23 10.46 55.49 0.58 -24.65 16 22 Si 0.91 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.13 1.96 7.26 -82.01 -0.60 1.37 16 27 C -0.08 -1.06 10.28 36.00 0.37 -0.69 16 28 N -0.28 -4.21 12.48 33.91 0.42 -3.79 16 29 N -0.37 -4.90 3.99 -67.67 -0.27 -5.17 16 30 C 0.10 0.78 11.38 59.85 0.68 1.46 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.40 7.10 8.64 -40.82 -0.35 6.74 16 35 H 0.05 1.02 7.80 -51.93 -0.41 0.61 16 36 H 0.06 1.32 8.00 -51.92 -0.42 0.90 16 37 H 0.05 0.86 7.80 -51.93 -0.41 0.46 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.83 7.81 -51.93 -0.41 0.42 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 45 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -32.21 387.69 -7.27 -39.47 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.26 Total: 8.39 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -0.76 Total: 6.60 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.03 Total: -60.42 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.10 Total: -15.96 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.21 -7.27 -39.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097962156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.671 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds