Wall clock time and date at job start Tue Mar 31 2020 18:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35343 * 116.99940 * 2 1 4 4 C 1.38997 * 126.40779 * 266.67453 * 3 2 1 5 5 C 1.46923 * 126.49333 * 0.02562 * 4 3 2 6 6 O 1.21668 * 120.00065 * 269.71149 * 5 4 3 7 7 N 1.34782 * 120.00154 * 89.71241 * 5 4 3 8 8 C 1.46493 * 120.00110 * 179.97438 * 7 5 4 9 9 H 1.09007 * 110.68709 * 32.01697 * 8 7 5 10 10 C 1.55474 * 110.76069 * 268.95427 * 8 7 5 11 11 C 1.55842 * 103.33178 * 241.51837 * 10 8 7 12 12 H 1.09002 * 116.12895 * 159.23608 * 11 10 8 13 13 C 1.55392 * 105.04336 * 288.04179 * 11 10 8 14 14 C 1.54850 * 103.48801 * 72.07263 * 13 11 10 15 15 C 1.55845 * 103.44412 * 359.87516 * 14 13 11 16 16 H 1.09004 * 115.56031 * 158.81237 * 15 14 13 17 17 N 1.50234 * 101.04881 * 33.02351 * 11 10 8 18 18 C 1.36936 * 130.83905 * 126.06984 * 17 11 10 19 19 H 1.08003 * 119.99956 * 179.65984 * 18 17 11 20 20 C 1.38811 * 120.00048 * 359.66521 * 18 17 11 21 21 N 1.31613 * 119.99810 * 359.71966 * 20 18 17 22 22 Si 1.86800 * 120.00088 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47181 * 59.99439 * 22 20 18 24 24 H 1.48501 * 109.47338 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46982 * 299.99430 * 22 20 18 26 26 C 1.41459 * 107.01165 * 179.75688 * 4 3 2 27 27 C 1.50693 * 125.93466 * 180.21947 * 26 4 3 28 28 N 1.30316 * 108.13446 * 0.24277 * 26 4 3 29 29 N 1.34660 * 126.40840 * 86.84971 * 3 2 1 30 30 C 1.46502 * 125.74112 * 0.02562 * 29 3 2 31 31 H 1.08993 * 109.46992 * 61.80875 * 1 2 3 32 32 H 1.09002 * 109.46774 * 181.80808 * 1 2 3 33 33 H 1.08995 * 109.46641 * 301.80349 * 1 2 3 34 34 H 0.97002 * 119.99438 * 359.97438 * 7 5 4 35 35 H 1.08998 * 110.60928 * 123.09701 * 10 8 7 36 36 H 1.09008 * 110.75643 * 0.02562 * 10 8 7 37 37 H 1.08998 * 110.71300 * 313.51831 * 13 11 10 38 38 H 1.08995 * 110.49649 * 190.52627 * 13 11 10 39 39 H 1.08996 * 110.62499 * 241.38902 * 14 13 11 40 40 H 1.08996 * 110.76116 * 118.42218 * 14 13 11 41 41 H 0.97002 * 120.00124 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47223 * 90.00134 * 27 26 4 43 43 H 1.08999 * 109.47750 * 210.00363 * 27 26 4 44 44 H 1.09004 * 109.47054 * 330.00335 * 27 26 4 45 45 H 1.09009 * 109.46489 * 275.42988 * 30 29 3 46 46 H 1.08998 * 109.47684 * 35.42615 * 30 29 3 47 47 H 1.08994 * 109.47380 * 155.43659 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.4758 1.9115 -1.1168 5 6 2.3518 1.4899 -2.5187 6 8 3.2399 0.8419 -3.0399 7 7 1.2542 1.8209 -3.2275 8 6 1.1309 1.4010 -4.6255 9 1 1.6290 0.4447 -4.7858 10 6 1.7072 2.4850 -5.5795 11 6 0.4745 2.9006 -6.4376 12 1 0.5364 3.8723 -6.9276 13 6 0.2143 1.6936 -7.3809 14 6 -0.3622 0.6126 -6.4337 15 6 -0.3683 1.3156 -5.0429 16 1 -1.0488 0.8914 -4.3044 17 7 -0.6379 2.7391 -5.4408 18 6 -1.6038 3.6170 -5.0268 19 1 -2.3332 3.3102 -4.2917 20 6 -1.6456 4.9013 -5.5520 21 7 -0.7535 5.2769 -6.4438 22 14 -2.9629 6.0991 -4.9867 23 1 -2.8410 6.3140 -3.5225 24 1 -2.7903 7.3941 -5.6928 25 1 -4.3042 5.5416 -5.2953 26 6 3.0522 3.1154 -0.6481 27 6 3.6531 4.2001 -1.5043 28 7 2.9737 3.1232 0.6526 29 7 2.3533 1.9451 1.0821 30 6 2.0816 1.5795 2.4745 31 1 -0.3633 0.4855 -0.9057 32 1 -0.3633 -1.0272 0.0324 33 1 -0.3632 0.5416 0.8734 34 1 0.5460 2.3372 -2.8118 35 1 2.4899 2.0639 -6.2104 36 1 2.0859 3.3360 -5.0132 37 1 1.1445 1.3507 -7.8338 38 1 -0.5128 1.9588 -8.1484 39 1 0.2822 -0.2663 -6.4169 40 1 -1.3748 0.3394 -6.7302 41 1 -0.7825 6.1744 -6.8105 42 1 2.8817 4.9232 -1.7692 43 1 4.4469 4.7020 -0.9509 44 1 4.0656 3.7599 -2.4122 45 1 1.0632 1.8691 2.7341 46 1 2.1951 0.5023 2.5962 47 1 2.7839 2.0953 3.1293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097962156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:42 Heat of formation + Delta-G solvation = 34.340496 kcal Electronic energy + Delta-G solvation = -30371.813371 eV Core-core repulsion = 26364.567415 eV Total energy + Delta-G solvation = -4007.245956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.68736 -41.10119 -39.58141 -39.30760 -35.23968 -34.98726 -34.34900 -31.49647 -30.93998 -30.55659 -30.25265 -29.28790 -28.11493 -26.76867 -26.04916 -23.92319 -22.40165 -21.63365 -21.47289 -20.93376 -20.27025 -19.03321 -18.79451 -17.88469 -17.67275 -17.13678 -17.02518 -16.71476 -15.93963 -15.76961 -15.73721 -15.37333 -15.10660 -14.80757 -14.48077 -14.38761 -14.29351 -13.74591 -13.66872 -13.60152 -13.38649 -13.10778 -12.86769 -12.83370 -12.76514 -12.75481 -12.65128 -12.37829 -12.07993 -11.96297 -11.86595 -11.67053 -11.35081 -11.25914 -10.93883 -10.90861 -10.68130 -10.29687 -9.92884 -9.70770 -8.82842 -7.71653 -5.11182 0.26274 1.06452 1.24437 1.50797 1.51693 1.55415 1.57807 2.32938 2.46971 2.53143 3.33836 3.41248 3.49381 3.84590 3.98613 4.08551 4.14322 4.16573 4.24268 4.28882 4.30598 4.31468 4.39823 4.50015 4.53607 4.57747 4.63807 4.66127 4.67786 4.74397 4.77031 4.87415 4.89396 4.95812 5.08819 5.12335 5.21634 5.23365 5.39985 5.41899 5.55040 5.62979 5.75629 5.94206 6.22678 6.31918 6.41482 6.63270 7.09908 7.27002 7.76689 8.62760 9.35319 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.004135 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.518352 B = 6769.991974 C = 7527.621149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.296 3.704 4 C -0.313 4.313 5 C 0.605 3.395 6 O -0.580 6.580 7 N -0.690 5.690 8 C 0.138 3.862 9 H 0.086 0.914 10 C -0.132 4.132 11 C 0.141 3.859 12 H 0.116 0.884 13 C -0.133 4.133 14 C -0.120 4.120 15 C 0.129 3.871 16 H 0.102 0.898 17 N -0.609 5.609 18 C -0.213 4.213 19 H 0.084 0.916 20 C -0.064 4.064 21 N -0.945 5.945 22 Si 0.970 3.030 23 H -0.281 1.281 24 H -0.301 1.301 25 H -0.282 1.282 26 C 0.115 3.885 27 C -0.076 4.076 28 N -0.292 5.292 29 N -0.364 5.364 30 C 0.084 3.916 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.070 0.930 34 H 0.403 0.597 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.245 0.755 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -9.444 14.990 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.123 3.877 4 C -0.329 4.329 5 C 0.390 3.610 6 O -0.460 6.460 7 N -0.338 5.338 8 C 0.032 3.968 9 H 0.104 0.896 10 C -0.173 4.173 11 C 0.034 3.966 12 H 0.134 0.866 13 C -0.172 4.172 14 C -0.159 4.159 15 C 0.022 3.978 16 H 0.120 0.880 17 N -0.330 5.330 18 C -0.342 4.342 19 H 0.101 0.899 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.800 3.200 23 H -0.208 1.208 24 H -0.227 1.227 25 H -0.209 1.209 26 C -0.050 4.050 27 C -0.135 4.135 28 N -0.118 5.118 29 N -0.153 5.153 30 C -0.055 4.055 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.089 0.911 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.116 0.884 46 H 0.124 0.876 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.260 -9.284 15.817 18.628 hybrid contribution -1.257 0.794 -0.511 1.572 sum 2.003 -8.490 15.306 17.617 Atomic orbital electron populations 1.23507 0.74847 1.06365 1.02190 1.86014 1.23241 1.20136 1.93158 1.19123 0.96662 0.85524 0.86405 1.19906 1.19871 1.00085 0.92996 1.17219 0.81385 0.77844 0.84509 1.90724 1.41182 1.41674 1.72464 1.45943 1.20389 1.54836 1.12592 1.22613 0.97929 0.96826 0.79446 0.89615 1.23418 0.98290 0.97284 0.98298 1.23491 0.85343 0.98187 0.89547 0.86627 1.22897 0.99597 0.96993 0.97700 1.22840 1.00668 0.97220 0.95186 1.23342 0.92429 0.86071 0.96002 0.88015 1.46699 1.31859 1.08472 1.46019 1.19267 1.05005 0.91861 1.18098 0.89866 1.25358 1.01076 0.98942 1.00251 1.69700 1.37754 1.18367 1.33687 0.85270 0.79125 0.78215 0.77386 1.20767 1.22747 1.20880 1.22412 0.96531 0.94589 0.91480 1.20319 1.01446 0.94454 0.97269 1.77082 1.20761 1.01773 1.12143 1.49074 1.45122 1.13306 1.07757 1.22385 1.04456 1.03463 0.75147 0.93200 0.84854 0.91118 0.76254 0.91567 0.94394 0.91104 0.94326 0.90118 0.92131 0.94542 0.89419 0.88317 0.91127 0.88394 0.87563 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.13 113.37 1.26 1.67 16 2 O -0.32 -7.73 10.46 -86.33 -0.90 -8.63 16 3 C 0.30 8.32 7.03 84.44 0.59 8.91 16 4 C -0.31 -10.34 5.89 -20.03 -0.12 -10.45 16 5 C 0.60 22.40 7.34 86.52 0.63 23.03 16 6 O -0.58 -25.26 16.76 -4.25 -0.07 -25.33 16 7 N -0.69 -24.38 5.09 -437.59 -2.23 -26.61 16 8 C 0.14 5.04 2.82 46.83 0.13 5.17 16 9 H 0.09 3.10 7.23 -2.38 -0.02 3.08 16 10 C -0.13 -5.38 6.25 32.43 0.20 -5.17 16 11 C 0.14 6.37 4.69 46.07 0.22 6.58 16 12 H 0.12 6.19 5.52 -2.39 -0.01 6.18 16 13 C -0.13 -5.05 6.42 32.05 0.21 -4.84 16 14 C -0.12 -3.99 6.44 32.21 0.21 -3.78 16 15 C 0.13 4.70 5.06 46.23 0.23 4.94 16 16 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 17 N -0.61 -28.06 2.99 -616.07 -1.84 -29.90 16 18 C -0.21 -10.88 10.59 84.03 0.89 -9.99 16 19 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 21 N -0.95 -53.65 10.46 21.65 0.23 -53.43 16 22 Si 0.97 43.82 29.55 68.60 2.03 45.84 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 C 0.12 3.57 7.26 43.58 0.32 3.89 16 27 C -0.08 -2.07 10.28 71.23 0.73 -1.34 16 28 N -0.29 -8.39 12.48 -46.64 -0.58 -8.98 16 29 N -0.36 -8.85 3.99 -479.80 -1.91 -10.76 16 30 C 0.08 1.09 11.38 127.77 1.45 2.54 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.40 14.12 8.64 -92.71 -0.80 13.32 16 35 H 0.07 2.48 7.80 -2.39 -0.02 2.46 16 36 H 0.04 1.68 8.00 -2.38 -0.02 1.66 16 37 H 0.07 2.36 7.80 -2.39 -0.02 2.34 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 2.27 7.81 -2.39 -0.02 2.25 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 42 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.07 2.06 8.01 -2.38 -0.02 2.04 16 45 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.60 387.69 2.33 -68.27 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.19 Total: 31.29 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 7.43 Total: 18.23 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -6.34 Total: -129.67 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.97 Total: -33.97 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.60 2.33 -68.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097962156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.611 kcal (2) G-P(sol) polarization free energy of solvation -70.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds