Wall clock time and date at job start Tue Mar 31 2020 19:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.51587 * 2 1 4 4 N 1.46496 * 109.46844 * 59.99894 * 3 2 1 5 5 C 1.34780 * 119.99502 * 180.02562 * 4 3 2 6 6 O 1.21621 * 120.00413 * 0.02562 * 5 4 3 7 7 C 1.47329 * 119.99782 * 180.02562 * 5 4 3 8 8 C 1.36288 * 126.22963 * 179.97438 * 7 5 4 9 9 N 1.35618 * 106.99125 * 179.97438 * 8 7 5 10 10 C 1.35877 * 107.65512 * 0.14658 * 9 8 7 11 11 N 1.30590 * 108.87939 * 359.79380 * 10 9 8 12 12 C 1.51604 * 109.85295 * 179.79459 * 10 9 8 13 13 C 1.54505 * 104.27680 * 343.37038 * 12 10 9 14 14 C 1.47075 * 141.45806 * 180.26882 * 9 8 7 15 15 C 1.53298 * 109.51378 * 239.89830 * 2 1 3 16 16 N 1.47157 * 108.38129 * 292.32949 * 15 2 1 17 17 C 1.36938 * 120.98069 * 129.44140 * 16 15 2 18 18 H 1.07998 * 120.00247 * 206.23549 * 17 16 15 19 19 C 1.38810 * 119.99952 * 26.23988 * 17 16 15 20 20 N 1.31624 * 120.00276 * 16.90944 * 19 17 16 21 21 Si 1.86798 * 119.99857 * 196.91128 * 19 17 16 22 22 H 1.48505 * 109.47267 * 59.99922 * 21 19 17 23 23 H 1.48504 * 109.47301 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47218 * 299.99852 * 21 19 17 25 25 C 1.47143 * 118.03455 * 309.45802 * 16 15 2 26 26 C 1.53292 * 108.38589 * 50.54188 * 25 16 15 27 27 O 1.42961 * 109.51548 * 120.10173 * 2 1 3 28 28 H 1.09001 * 109.47290 * 59.99977 * 1 2 3 29 29 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46865 * 300.00410 * 1 2 3 31 31 H 1.09007 * 109.46510 * 300.00129 * 3 2 1 32 32 H 1.08999 * 109.47249 * 180.02562 * 3 2 1 33 33 H 0.97000 * 120.00436 * 359.97438 * 4 3 2 34 34 H 1.08009 * 126.53779 * 359.96138 * 8 7 5 35 35 H 1.09005 * 110.46869 * 224.67543 * 12 10 9 36 36 H 1.08999 * 110.46984 * 102.07412 * 12 10 9 37 37 H 1.08996 * 110.94596 * 267.21727 * 13 12 10 38 38 H 1.08999 * 110.97577 * 143.53252 * 13 12 10 39 39 H 1.09001 * 110.22437 * 78.02536 * 14 9 8 40 40 H 1.08995 * 110.23188 * 316.16200 * 14 9 8 41 41 H 1.08999 * 109.68179 * 52.04795 * 15 2 1 42 42 H 1.09000 * 109.68597 * 172.56722 * 15 2 1 43 43 H 0.96998 * 119.99871 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.68302 * 170.26161 * 25 16 15 45 45 H 1.09001 * 109.69058 * 290.81607 * 25 16 15 46 46 H 1.09006 * 109.51427 * 67.61650 * 26 25 16 47 47 H 1.09002 * 109.51517 * 187.71956 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5532 2.1330 1.1961 5 6 1.8795 3.4233 1.4091 6 8 2.5784 4.0141 0.6081 7 6 1.3893 4.1180 2.6123 8 6 1.6402 5.4137 2.9527 9 7 1.0029 5.6454 4.1272 10 6 0.3768 4.4954 4.4902 11 7 0.6067 3.5846 3.5830 12 6 -0.3503 4.6980 5.8050 13 6 0.2720 5.9855 6.3901 14 6 0.7667 6.7063 5.1180 15 6 2.0420 -0.7247 -1.2501 16 7 1.6969 -2.1505 -1.1339 17 6 1.0618 -2.8074 -2.1539 18 1 0.4492 -3.6710 -1.9412 19 6 1.2054 -2.3632 -3.4611 20 7 2.1869 -1.5438 -3.7738 21 14 0.0056 -2.9284 -4.7766 22 1 -1.3700 -2.5102 -4.4047 23 1 0.3737 -2.3159 -6.0784 24 1 0.0589 -4.4078 -4.8925 25 6 2.0542 -2.8494 0.1107 26 6 1.5416 -2.0212 1.2945 27 8 2.0075 -0.6758 1.1658 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6781 1.9562 -0.8901 32 1 3.1311 1.4413 -0.0005 33 1 0.9949 1.6622 1.8345 34 1 2.2339 6.1220 2.3937 35 1 -0.1755 3.8532 6.4714 36 1 -1.4179 4.8345 5.6330 37 1 1.1045 5.7495 7.0529 38 1 -0.4794 6.5813 6.9084 39 1 0.0052 7.3972 4.7561 40 1 1.6931 7.2420 5.3247 41 1 1.5697 -0.3038 -2.1377 42 1 3.1239 -0.6129 -1.3220 43 1 2.2869 -1.2332 -4.6873 44 1 1.5900 -3.8355 0.1243 45 1 3.1374 -2.9521 0.1763 46 1 0.4516 -2.0293 1.2996 47 1 1.9133 -2.4485 2.2258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107952603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:00 Heat of formation + Delta-G solvation = -4.971632 kcal Electronic energy + Delta-G solvation = -29204.690003 eV Core-core repulsion = 25195.739345 eV Total energy + Delta-G solvation = -4008.950658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.50885 -41.03815 -40.03715 -37.13193 -36.53422 -35.92026 -33.35867 -33.19519 -32.87523 -30.11454 -29.57052 -28.17079 -28.05426 -27.30963 -25.00664 -24.35938 -22.80039 -22.37340 -21.22571 -21.00612 -20.27752 -18.95505 -18.54270 -17.61371 -17.45567 -17.06004 -16.83703 -16.78845 -16.12790 -16.02959 -15.60135 -15.38409 -15.21283 -15.03327 -14.84165 -14.65267 -14.38746 -14.16074 -13.96161 -13.91321 -13.43341 -13.32595 -13.18227 -12.93076 -12.75350 -12.53032 -12.45770 -12.44171 -12.17670 -11.96849 -11.91041 -11.84795 -11.42558 -11.20638 -11.04253 -10.74681 -10.73627 -10.48970 -10.16688 -9.48170 -8.71326 -7.88467 -5.35427 0.51371 1.33234 1.46531 1.49256 1.55935 1.59896 2.25327 2.46726 2.49772 2.77490 2.81641 3.25875 3.46318 3.50792 3.62734 3.89459 3.97644 3.99995 4.04940 4.10616 4.20584 4.40520 4.41902 4.46138 4.48245 4.56224 4.59910 4.62409 4.69948 4.77457 4.90699 4.95431 4.96486 5.05058 5.10868 5.11660 5.17459 5.20144 5.33116 5.36135 5.53020 5.54005 5.61974 5.88927 6.30084 6.37533 6.48395 6.86661 7.07376 7.18744 7.76647 8.31477 9.17368 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022396 B = 0.002478 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.913959 B =11295.222416 C =11733.518851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.095 3.905 3 C 0.149 3.851 4 N -0.695 5.695 5 C 0.597 3.403 6 O -0.585 6.585 7 C -0.088 4.088 8 C 0.059 3.941 9 N -0.477 5.477 10 C 0.182 3.818 11 N -0.487 5.487 12 C -0.041 4.041 13 C -0.115 4.115 14 C 0.090 3.910 15 C 0.169 3.831 16 N -0.607 5.607 17 C -0.260 4.260 18 H 0.074 0.926 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.276 1.276 23 H -0.296 1.296 24 H -0.274 1.274 25 C 0.104 3.896 26 C 0.052 3.948 27 O -0.387 6.387 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.414 0.586 34 H 0.198 0.802 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.138 0.862 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.069 0.931 42 H -0.005 1.005 43 H 0.251 0.749 44 H 0.074 0.926 45 H 0.014 0.986 46 H 0.059 0.941 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.391 17.563 24.955 31.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 C 0.024 3.976 4 N -0.345 5.345 5 C 0.385 3.615 6 O -0.466 6.466 7 C -0.216 4.216 8 C -0.081 4.081 9 N -0.159 5.159 10 C -0.083 4.083 11 N -0.207 5.207 12 C -0.080 4.080 13 C -0.152 4.152 14 C -0.029 4.029 15 C 0.042 3.958 16 N -0.331 5.331 17 C -0.390 4.390 18 H 0.092 0.908 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.202 1.202 23 H -0.223 1.223 24 H -0.200 1.200 25 C -0.022 4.022 26 C -0.026 4.026 27 O -0.307 6.307 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.252 0.748 34 H 0.215 0.785 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.156 0.844 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.013 0.987 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.032 0.968 46 H 0.077 0.923 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.947 17.470 24.342 30.757 hybrid contribution 0.066 -0.160 -1.633 1.642 sum -6.881 17.310 22.709 29.372 Atomic orbital electron populations 1.22085 0.94237 1.02763 1.01772 1.22193 0.94477 0.90433 0.87552 1.21119 0.98874 0.89693 0.87919 1.45624 1.52616 1.11202 1.25041 1.17236 0.78996 0.81409 0.83859 1.90753 1.40696 1.67420 1.47723 1.20310 1.08813 0.93951 0.98524 1.22323 1.00021 0.97369 0.88431 1.46725 1.36868 1.15081 1.17194 1.25560 0.99951 0.83053 0.99759 1.70105 1.16652 1.31423 1.02548 1.20999 0.99755 1.00670 0.86584 1.22825 1.03050 0.94364 0.94996 1.22976 1.04690 0.88662 0.86577 1.21041 0.95517 0.84404 0.94804 1.44235 1.68646 1.05455 1.14734 1.19478 1.21343 1.12109 0.86080 0.90822 1.25815 0.98836 1.00756 0.99190 1.70183 1.31048 1.38441 1.18561 0.85330 0.79035 0.78035 0.77995 1.20196 1.22276 1.19982 1.21803 0.97075 0.96290 0.87016 1.23121 0.99040 0.81773 0.98647 1.87839 1.73261 1.26554 1.43035 0.92514 0.91754 0.91328 0.90604 0.92392 0.74842 0.78472 0.87406 0.86734 0.88656 0.84352 0.86968 0.87173 0.91284 0.98698 0.94022 0.90768 0.96849 0.92327 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 7.92 71.98 0.57 -5.07 16 2 C 0.09 3.88 0.76 -10.69 -0.01 3.87 16 3 C 0.15 5.91 4.82 86.38 0.42 6.33 16 4 N -0.69 -25.06 5.15 -466.45 -2.40 -27.46 16 5 C 0.60 22.07 7.81 86.63 0.68 22.75 16 6 O -0.58 -24.66 16.88 -4.10 -0.07 -24.73 16 7 C -0.09 -2.72 6.97 40.50 0.28 -2.44 16 8 C 0.06 1.41 11.74 83.65 0.98 2.39 16 9 N -0.48 -7.99 3.56 -508.25 -1.81 -9.80 16 10 C 0.18 3.60 8.58 138.12 1.18 4.79 16 11 N -0.49 -14.02 11.01 -175.79 -1.94 -15.95 16 12 C -0.04 -0.30 6.85 30.65 0.21 -0.09 16 13 C -0.11 -0.04 7.16 31.57 0.23 0.18 16 14 C 0.09 0.42 7.77 86.73 0.67 1.09 16 15 C 0.17 8.58 4.12 86.35 0.36 8.94 16 16 N -0.61 -31.06 2.57 -697.55 -1.79 -32.85 16 17 C -0.26 -14.30 9.65 84.03 0.81 -13.49 16 18 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 19 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 20 N -0.94 -56.48 11.14 21.65 0.24 -56.24 16 21 Si 0.97 45.20 29.59 68.60 2.03 47.23 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 C 0.10 4.38 6.73 86.35 0.58 4.97 16 26 C 0.05 1.81 6.60 72.08 0.48 2.29 16 27 O -0.39 -15.33 9.98 -148.98 -1.49 -16.82 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.52 6.12 -2.39 -0.01 2.50 16 30 H 0.07 2.22 6.86 -2.39 -0.02 2.21 16 31 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 32 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.41 14.20 6.91 -92.71 -0.64 13.56 16 34 H 0.20 3.98 8.06 -2.91 -0.02 3.95 16 35 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.14 -0.82 8.14 -2.39 -0.02 -0.83 16 39 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.07 3.87 6.13 -2.39 -0.01 3.86 16 42 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.07 2.91 7.96 -2.38 -0.02 2.89 16 45 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 1.97 6.25 -2.38 -0.01 1.96 16 47 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -79.71 375.80 0.98 -78.72 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.35 Total: 23.82 kcal Atomic # 6 Polarization: 26.21 SS G_CDS: 7.86 Total: 34.07 kcal Atomic # 7 Polarization: -134.61 SS G_CDS: -7.70 Total: -142.30 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.56 Total: -41.54 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -79.71 0.98 -78.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107952603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.750 kcal (2) G-P(sol) polarization free energy of solvation -79.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds