Wall clock time and date at job start Tue Mar 31 2020 19:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.55421 * 2 1 4 4 N 1.46502 * 109.47082 * 60.12625 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21576 * 119.99664 * 0.02562 * 5 4 3 7 7 C 1.47703 * 120.00229 * 179.97438 * 5 4 3 8 8 C 1.41405 * 126.50977 * 179.71217 * 7 5 4 9 9 C 1.35447 * 105.43558 * 179.97438 * 8 7 5 10 10 N 1.34872 * 107.67447 * 0.22693 * 9 8 7 11 11 N 1.29359 * 109.58815 * 359.96741 * 10 9 8 12 12 C 1.47458 * 110.69395 * 180.09622 * 10 9 8 13 13 C 1.54323 * 105.62868 * 342.70096 * 12 10 9 14 14 C 1.51341 * 141.96556 * 179.73303 * 9 8 7 15 15 C 1.53294 * 109.51505 * 239.87181 * 2 1 3 16 16 N 1.47231 * 108.40580 * 292.38573 * 15 2 1 17 17 C 1.36930 * 121.03478 * 129.45775 * 16 15 2 18 18 H 1.08002 * 120.00530 * 206.18179 * 17 16 15 19 19 C 1.38816 * 119.99608 * 26.18409 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.88476 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.88547 * 19 17 16 22 22 H 1.48497 * 109.46975 * 59.99586 * 21 19 17 23 23 H 1.48495 * 109.47304 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47064 * 300.00118 * 21 19 17 25 25 C 1.47154 * 117.98080 * 309.48144 * 16 15 2 26 26 C 1.53298 * 108.41825 * 50.52276 * 25 16 15 27 27 O 1.42959 * 109.51115 * 120.12529 * 2 1 3 28 28 H 1.09004 * 109.46996 * 299.87189 * 1 2 3 29 29 H 1.08996 * 109.47344 * 59.87067 * 1 2 3 30 30 H 1.09000 * 109.46808 * 179.87595 * 1 2 3 31 31 H 1.09002 * 109.47344 * 180.12437 * 3 2 1 32 32 H 1.08999 * 109.46999 * 300.12635 * 3 2 1 33 33 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 34 34 H 1.08001 * 127.28490 * 0.04282 * 8 7 5 35 35 H 1.08998 * 110.21873 * 101.74050 * 12 10 9 36 36 H 1.09002 * 110.21773 * 223.66355 * 12 10 9 37 37 H 1.09000 * 110.96769 * 267.77747 * 13 12 10 38 38 H 1.08998 * 111.00196 * 144.03407 * 13 12 10 39 39 H 1.08992 * 110.49325 * 315.65378 * 14 9 8 40 40 H 1.09002 * 110.49084 * 78.32354 * 14 9 8 41 41 H 1.09001 * 109.68145 * 52.09850 * 15 2 1 42 42 H 1.09001 * 109.68444 * 172.65236 * 15 2 1 43 43 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.68310 * 290.77594 * 25 16 15 45 45 H 1.09005 * 109.67869 * 170.26376 * 25 16 15 46 46 H 1.09001 * 109.51044 * 67.59999 * 26 25 16 47 47 H 1.09000 * 109.51036 * 187.70217 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5572 2.1322 1.1977 5 6 1.8847 3.4220 1.4111 6 8 2.5820 4.0127 0.6093 7 6 1.3954 4.1183 2.6183 8 6 1.6576 5.4599 2.9802 9 6 1.0066 5.6508 4.1525 10 7 0.3962 4.4923 4.4754 11 7 0.6384 3.6060 3.5648 12 6 -0.3384 4.6271 5.7469 13 6 0.2342 5.8890 6.4260 14 6 0.7404 6.6991 5.2111 15 6 2.0421 -0.7252 -1.2497 16 7 1.6959 -2.1516 -1.1340 17 6 1.0613 -2.8090 -2.1539 18 1 0.4490 -3.6729 -1.9412 19 6 1.2049 -2.3650 -3.4612 20 7 2.1856 -1.5448 -3.7738 21 14 0.0060 -2.9315 -4.7770 22 1 -1.3700 -2.5146 -4.4056 23 1 0.3739 -2.3190 -6.0788 24 1 0.0607 -4.4111 -4.8926 25 6 2.0522 -2.8497 0.1114 26 6 1.5396 -2.0210 1.2949 27 8 2.0075 -0.6763 1.1655 28 1 -0.3633 0.5119 0.8912 29 1 -0.3634 0.5158 -0.8888 30 1 -0.3633 -1.0277 -0.0022 31 1 3.1321 1.4402 -0.0022 32 1 1.6776 1.9568 -0.8888 33 1 1.0005 1.6610 1.8372 34 1 2.2505 6.1803 2.4362 35 1 -1.4038 4.7533 5.5548 36 1 -0.1691 3.7520 6.3743 37 1 1.0565 5.6333 7.0942 38 1 -0.5450 6.4328 6.9601 39 1 1.6587 7.2298 5.4621 40 1 -0.0249 7.3976 4.8725 41 1 1.5705 -0.3042 -2.1376 42 1 3.1241 -0.6147 -1.3208 43 1 2.2857 -1.2342 -4.6873 44 1 3.1352 -2.9532 0.1774 45 1 1.5878 -3.8358 0.1252 46 1 0.4496 -2.0284 1.2995 47 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107985266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:46 Heat of formation + Delta-G solvation = 38.057468 kcal Electronic energy + Delta-G solvation = -29218.584118 eV Core-core repulsion = 25211.499342 eV Total energy + Delta-G solvation = -4007.084776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.02326 -39.56665 -38.58956 -36.66635 -34.85292 -34.26024 -31.97497 -31.71861 -31.21697 -29.60301 -27.89628 -27.60324 -26.46278 -25.66532 -23.37762 -23.14961 -21.94375 -21.11250 -20.94430 -19.65056 -18.58748 -17.37548 -17.10751 -16.68169 -16.42041 -15.81746 -15.36708 -15.13695 -14.94646 -14.41559 -14.36060 -14.11388 -13.96166 -13.79650 -13.66471 -13.44450 -13.15986 -12.99676 -12.72107 -12.55912 -12.39103 -12.15588 -11.85696 -11.64104 -11.52095 -11.14686 -10.97727 -10.86804 -10.76241 -10.64217 -10.27595 -10.22987 -10.05145 -9.86164 -9.48433 -9.24976 -9.08736 -8.99165 -8.69392 -8.50287 -6.70699 -5.81293 -3.24506 1.54859 1.98891 2.07632 3.34746 3.38330 3.43368 3.43770 3.56611 3.62361 4.03735 4.17342 4.30230 4.39959 4.46648 4.58941 4.83928 4.88670 5.04388 5.19349 5.22305 5.25069 5.36741 5.37726 5.48011 5.55335 5.58111 5.75909 5.77486 5.97714 5.99970 6.08339 6.16031 6.19763 6.31755 6.36870 6.42011 6.53414 6.64000 6.75143 6.82117 6.87680 7.11913 7.51037 7.69057 7.73226 7.94409 7.96763 8.36086 8.44003 9.13817 9.77059 10.34689 11.26699 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022352 B = 0.002484 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.390486 B =11270.549668 C =11708.954040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 C 0.139 3.861 4 N -0.702 5.702 5 C 0.600 3.400 6 O -0.537 6.537 7 C -0.002 4.002 8 C -0.164 4.164 9 C -0.014 4.014 10 N -0.310 5.310 11 N -0.243 5.243 12 C 0.122 3.878 13 C -0.131 4.131 14 C -0.058 4.058 15 C 0.160 3.840 16 N -0.590 5.590 17 C -0.254 4.254 18 H 0.067 0.933 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.383 6.383 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.408 0.592 34 H 0.160 0.840 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.030 0.970 43 H 0.256 0.744 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 15.061 21.647 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 C 0.015 3.985 4 N -0.353 5.353 5 C 0.384 3.616 6 O -0.412 6.412 7 C -0.163 4.163 8 C -0.192 4.192 9 C -0.138 4.138 10 N -0.099 5.099 11 N -0.078 5.078 12 C 0.002 3.998 13 C -0.170 4.170 14 C -0.097 4.097 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.209 1.209 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.303 6.303 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.244 0.756 34 H 0.178 0.822 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.770 14.422 21.393 26.438 hybrid contribution -0.621 -0.088 -0.851 1.057 sum -6.391 14.334 20.542 25.851 Atomic orbital electron populations 1.22209 0.95762 1.03182 1.00828 1.22546 0.93594 0.90592 0.89499 1.21424 1.00057 0.89955 0.87026 1.45837 1.52750 1.11023 1.25712 1.16816 0.80013 0.81565 0.83204 1.90797 1.38340 1.66539 1.45522 1.21978 1.03155 0.94351 0.96805 1.20950 1.05594 0.96550 0.96147 1.22386 1.01881 0.90861 0.98704 1.46853 1.37025 1.08154 1.17862 1.73486 1.17372 1.18303 0.98591 1.22597 0.96388 1.00799 0.79983 1.22785 1.02394 0.94298 0.97504 1.20754 1.03136 0.95232 0.90585 1.21314 0.97856 0.83892 0.93642 1.43999 1.68647 1.04963 1.13803 1.19108 1.21712 1.12139 0.85394 0.91495 1.25033 0.97294 1.00128 0.97070 1.70001 1.29214 1.36705 1.18617 0.86362 0.81018 0.78300 0.81051 1.21012 1.21540 1.20883 1.21597 0.97544 0.95183 0.87376 1.23029 0.98302 0.83180 0.98673 1.87825 1.72847 1.25776 1.43821 0.93841 0.91887 0.90845 0.90588 0.89816 0.75572 0.82192 0.88450 0.88230 0.89235 0.87776 0.88675 0.88842 0.88501 0.95170 0.93363 0.95654 0.92100 0.93418 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 7.92 37.16 0.29 -2.68 16 2 C 0.08 1.55 0.76 -90.47 -0.07 1.48 16 3 C 0.14 2.57 4.82 -4.04 -0.02 2.55 16 4 N -0.70 -11.92 5.15 -61.29 -0.32 -12.23 16 5 C 0.60 10.57 7.82 -12.39 -0.10 10.47 16 6 O -0.54 -10.84 16.92 5.30 0.09 -10.75 16 7 C 0.00 -0.03 7.12 -82.91 -0.59 -0.62 16 8 C -0.16 -2.14 10.81 -39.37 -0.43 -2.57 16 9 C -0.01 -0.14 7.47 -81.94 -0.61 -0.75 16 10 N -0.31 -3.36 4.40 -55.55 -0.24 -3.60 16 11 N -0.24 -3.47 11.92 33.36 0.40 -3.07 16 12 C 0.12 0.66 7.78 -2.83 -0.02 0.64 16 13 C -0.13 -0.37 7.17 -25.22 -0.18 -0.55 16 14 C -0.06 -0.29 6.86 -26.75 -0.18 -0.47 16 15 C 0.16 3.81 4.12 -3.49 -0.01 3.80 16 16 N -0.59 -14.67 2.57 -171.76 -0.44 -15.12 16 17 C -0.25 -6.86 9.65 -15.06 -0.15 -7.00 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 20 N -0.90 -25.98 11.14 55.49 0.62 -25.36 16 21 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.11 2.31 6.73 -3.53 -0.02 2.28 16 26 C 0.05 0.83 6.60 37.31 0.25 1.08 16 27 O -0.38 -7.49 9.97 -35.23 -0.35 -7.84 16 28 H 0.04 0.70 6.88 -51.93 -0.36 0.34 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.44 6.11 -51.93 -0.32 1.12 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.41 6.60 6.93 -40.82 -0.28 6.32 16 34 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 2.54 6.14 -51.93 -0.32 2.22 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 46 H 0.05 0.84 6.25 -51.93 -0.32 0.51 16 47 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -34.20 375.78 -8.60 -42.80 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.06 Total: 5.32 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -1.93 Total: 7.67 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.01 Total: -59.38 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.26 Total: -18.58 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.20 -8.60 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107985266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.860 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds