Wall clock time and date at job start Tue Mar 31 2020 19:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.55421 * 2 1 4 4 N 1.46502 * 109.47082 * 60.12625 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21576 * 119.99664 * 0.02562 * 5 4 3 7 7 C 1.47703 * 120.00229 * 179.97438 * 5 4 3 8 8 C 1.41405 * 126.50977 * 179.71217 * 7 5 4 9 9 C 1.35447 * 105.43558 * 179.97438 * 8 7 5 10 10 N 1.34872 * 107.67447 * 0.22693 * 9 8 7 11 11 N 1.29359 * 109.58815 * 359.96741 * 10 9 8 12 12 C 1.47458 * 110.69395 * 180.09622 * 10 9 8 13 13 C 1.54323 * 105.62868 * 342.70096 * 12 10 9 14 14 C 1.51341 * 141.96556 * 179.73303 * 9 8 7 15 15 C 1.53294 * 109.51505 * 239.87181 * 2 1 3 16 16 N 1.47231 * 108.40580 * 292.38573 * 15 2 1 17 17 C 1.36930 * 121.03478 * 129.45775 * 16 15 2 18 18 H 1.08002 * 120.00530 * 206.18179 * 17 16 15 19 19 C 1.38816 * 119.99608 * 26.18409 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.88476 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.88547 * 19 17 16 22 22 H 1.48497 * 109.46975 * 59.99586 * 21 19 17 23 23 H 1.48495 * 109.47304 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47064 * 300.00118 * 21 19 17 25 25 C 1.47154 * 117.98080 * 309.48144 * 16 15 2 26 26 C 1.53298 * 108.41825 * 50.52276 * 25 16 15 27 27 O 1.42959 * 109.51115 * 120.12529 * 2 1 3 28 28 H 1.09004 * 109.46996 * 299.87189 * 1 2 3 29 29 H 1.08996 * 109.47344 * 59.87067 * 1 2 3 30 30 H 1.09000 * 109.46808 * 179.87595 * 1 2 3 31 31 H 1.09002 * 109.47344 * 180.12437 * 3 2 1 32 32 H 1.08999 * 109.46999 * 300.12635 * 3 2 1 33 33 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 34 34 H 1.08001 * 127.28490 * 0.04282 * 8 7 5 35 35 H 1.08998 * 110.21873 * 101.74050 * 12 10 9 36 36 H 1.09002 * 110.21773 * 223.66355 * 12 10 9 37 37 H 1.09000 * 110.96769 * 267.77747 * 13 12 10 38 38 H 1.08998 * 111.00196 * 144.03407 * 13 12 10 39 39 H 1.08992 * 110.49325 * 315.65378 * 14 9 8 40 40 H 1.09002 * 110.49084 * 78.32354 * 14 9 8 41 41 H 1.09001 * 109.68145 * 52.09850 * 15 2 1 42 42 H 1.09001 * 109.68444 * 172.65236 * 15 2 1 43 43 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.68310 * 290.77594 * 25 16 15 45 45 H 1.09005 * 109.67869 * 170.26376 * 25 16 15 46 46 H 1.09001 * 109.51044 * 67.59999 * 26 25 16 47 47 H 1.09000 * 109.51036 * 187.70217 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5572 2.1322 1.1977 5 6 1.8847 3.4220 1.4111 6 8 2.5820 4.0127 0.6093 7 6 1.3954 4.1183 2.6183 8 6 1.6576 5.4599 2.9802 9 6 1.0066 5.6508 4.1525 10 7 0.3962 4.4923 4.4754 11 7 0.6384 3.6060 3.5648 12 6 -0.3384 4.6271 5.7469 13 6 0.2342 5.8890 6.4260 14 6 0.7404 6.6991 5.2111 15 6 2.0421 -0.7252 -1.2497 16 7 1.6959 -2.1516 -1.1340 17 6 1.0613 -2.8090 -2.1539 18 1 0.4490 -3.6729 -1.9412 19 6 1.2049 -2.3650 -3.4612 20 7 2.1856 -1.5448 -3.7738 21 14 0.0060 -2.9315 -4.7770 22 1 -1.3700 -2.5146 -4.4056 23 1 0.3739 -2.3190 -6.0788 24 1 0.0607 -4.4111 -4.8926 25 6 2.0522 -2.8497 0.1114 26 6 1.5396 -2.0210 1.2949 27 8 2.0075 -0.6763 1.1655 28 1 -0.3633 0.5119 0.8912 29 1 -0.3634 0.5158 -0.8888 30 1 -0.3633 -1.0277 -0.0022 31 1 3.1321 1.4402 -0.0022 32 1 1.6776 1.9568 -0.8888 33 1 1.0005 1.6610 1.8372 34 1 2.2505 6.1803 2.4362 35 1 -1.4038 4.7533 5.5548 36 1 -0.1691 3.7520 6.3743 37 1 1.0565 5.6333 7.0942 38 1 -0.5450 6.4328 6.9601 39 1 1.6587 7.2298 5.4621 40 1 -0.0249 7.3976 4.8725 41 1 1.5705 -0.3042 -2.1376 42 1 3.1241 -0.6147 -1.3208 43 1 2.2857 -1.2342 -4.6873 44 1 3.1352 -2.9532 0.1774 45 1 1.5878 -3.8358 0.1252 46 1 0.4496 -2.0284 1.2995 47 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107985266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:45 Heat of formation + Delta-G solvation = 13.696314 kcal Electronic energy + Delta-G solvation = -29219.640497 eV Core-core repulsion = 25211.499342 eV Total energy + Delta-G solvation = -4008.141155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.87669 -41.09478 -40.10453 -37.27424 -36.56625 -35.96052 -33.32004 -33.18381 -32.71874 -30.44375 -29.59136 -28.32656 -28.02671 -27.30610 -25.02227 -24.43853 -22.80060 -22.42758 -21.93080 -20.89160 -20.21724 -18.95638 -18.12333 -17.84677 -17.52697 -17.15675 -16.84570 -16.76911 -16.15757 -16.07384 -15.62266 -15.42136 -15.22171 -15.20038 -14.77840 -14.67867 -14.42194 -14.07665 -13.96644 -13.93036 -13.46235 -13.21077 -13.09254 -12.94304 -12.76332 -12.54607 -12.46312 -12.45168 -12.18478 -11.98590 -11.97329 -11.87537 -11.81801 -11.41899 -11.10980 -10.76516 -10.50316 -10.32250 -9.98680 -9.94474 -8.72299 -7.89238 -5.36088 0.46074 1.09143 1.37618 1.46206 1.48701 1.55459 2.07172 2.29981 2.48587 2.77102 3.12031 3.24899 3.45322 3.49542 3.62493 3.88889 3.93216 3.98540 4.05883 4.08539 4.24548 4.40319 4.42508 4.44602 4.54330 4.56197 4.60030 4.62153 4.68559 4.75816 4.88275 4.93503 4.94248 5.03393 5.04882 5.09522 5.17535 5.18920 5.26626 5.31939 5.37706 5.52311 5.61230 5.65975 6.28843 6.35485 6.39950 6.94328 7.06518 7.10138 7.75802 8.30634 9.16615 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022352 B = 0.002484 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.390486 B =11270.549668 C =11708.954040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.095 3.905 3 C 0.147 3.853 4 N -0.694 5.694 5 C 0.600 3.400 6 O -0.572 6.572 7 C -0.033 4.033 8 C -0.195 4.195 9 C 0.000 4.000 10 N -0.306 5.306 11 N -0.263 5.263 12 C 0.104 3.896 13 C -0.116 4.116 14 C -0.058 4.058 15 C 0.168 3.832 16 N -0.607 5.607 17 C -0.261 4.261 18 H 0.074 0.926 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.276 1.276 23 H -0.297 1.297 24 H -0.275 1.275 25 C 0.103 3.897 26 C 0.052 3.948 27 O -0.387 6.387 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.414 0.586 34 H 0.159 0.841 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.141 0.859 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.069 0.931 42 H -0.004 1.004 43 H 0.251 0.749 44 H 0.013 0.987 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 15.883 25.160 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.023 3.977 4 N -0.345 5.345 5 C 0.385 3.615 6 O -0.451 6.451 7 C -0.192 4.192 8 C -0.223 4.223 9 C -0.126 4.126 10 N -0.096 5.096 11 N -0.099 5.099 12 C -0.013 4.013 13 C -0.154 4.154 14 C -0.097 4.097 15 C 0.042 3.958 16 N -0.331 5.331 17 C -0.390 4.390 18 H 0.092 0.908 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.202 1.202 23 H -0.223 1.223 24 H -0.200 1.200 25 C -0.022 4.022 26 C -0.026 4.026 27 O -0.307 6.307 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.251 0.749 34 H 0.177 0.823 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.159 0.841 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.088 0.912 42 H 0.014 0.986 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.096 15.215 24.966 30.337 hybrid contribution 0.100 -0.354 -1.796 1.833 sum -7.996 14.861 23.171 28.665 Atomic orbital electron populations 1.22098 0.94177 1.02836 1.01850 1.22195 0.94508 0.90367 0.87591 1.21168 0.99107 0.89677 0.87749 1.45672 1.52692 1.10982 1.25115 1.17174 0.79260 0.81355 0.83680 1.90760 1.39993 1.67256 1.47060 1.21654 1.05277 0.95383 0.96845 1.21113 1.07291 0.95929 0.97983 1.23085 0.99338 0.92087 0.98065 1.47499 1.36233 1.07640 1.18218 1.73358 1.17693 1.19584 0.99293 1.23219 0.97209 1.02795 0.78067 1.22883 1.03547 0.92522 0.96452 1.21043 1.04647 0.94368 0.89595 1.21062 0.95567 0.84387 0.94829 1.44249 1.68684 1.05467 1.14669 1.19470 1.21398 1.12087 0.86072 0.90833 1.25807 0.98815 1.00743 0.99178 1.70173 1.31051 1.38382 1.18580 0.85339 0.79052 0.78025 0.78033 1.20188 1.22289 1.20018 1.21805 0.97088 0.96298 0.87041 1.23121 0.99033 0.81767 0.98638 1.87834 1.73200 1.26611 1.43045 0.91249 0.92419 0.91732 0.92133 0.90325 0.74860 0.82283 0.86540 0.87213 0.88544 0.84133 0.87153 0.86875 0.91240 0.98631 0.94003 0.96862 0.90817 0.92274 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 7.92 71.98 0.57 -4.92 16 2 C 0.09 3.77 0.76 -10.69 -0.01 3.76 16 3 C 0.15 5.70 4.82 86.38 0.42 6.11 16 4 N -0.69 -24.09 5.15 -466.10 -2.40 -26.49 16 5 C 0.60 22.00 7.82 86.74 0.68 22.67 16 6 O -0.57 -24.44 16.92 -3.96 -0.07 -24.51 16 7 C -0.03 -1.03 7.12 42.46 0.30 -0.73 16 8 C -0.19 -5.13 10.81 22.40 0.24 -4.88 16 9 C 0.00 0.00 7.47 41.65 0.31 0.31 16 10 N -0.31 -6.00 4.40 -329.65 -1.45 -7.45 16 11 N -0.26 -7.33 11.92 -48.36 -0.58 -7.91 16 12 C 0.10 0.75 7.78 86.64 0.67 1.42 16 13 C -0.12 -0.09 7.17 31.57 0.23 0.14 16 14 C -0.06 -0.34 6.86 30.58 0.21 -0.13 16 15 C 0.17 8.41 4.12 86.34 0.36 8.76 16 16 N -0.61 -30.66 2.57 -697.32 -1.79 -32.45 16 17 C -0.26 -14.17 9.65 84.04 0.81 -13.36 16 18 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 19 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 20 N -0.94 -56.06 11.14 21.65 0.24 -55.82 16 21 Si 0.97 44.89 29.59 68.60 2.03 46.92 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.10 4.30 6.73 86.35 0.58 4.88 16 26 C 0.05 1.77 6.60 72.08 0.48 2.24 16 27 O -0.39 -14.87 9.97 -148.98 -1.49 -16.35 16 28 H 0.07 2.13 6.88 -2.38 -0.02 2.12 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.46 6.11 -2.39 -0.01 2.44 16 31 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.41 13.29 6.93 -92.71 -0.64 12.65 16 34 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 35 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.14 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.07 3.84 6.14 -2.39 -0.01 3.83 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 2.84 7.96 -2.38 -0.02 2.83 16 46 H 0.06 1.93 6.25 -2.39 -0.01 1.91 16 47 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -78.34 375.78 1.11 -77.23 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.35 Total: 22.93 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 6.27 Total: 23.91 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -5.98 Total: -130.12 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.55 Total: -40.87 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -78.34 1.11 -77.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107985266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.923 kcal (2) G-P(sol) polarization free energy of solvation -78.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds