Wall clock time and date at job start Tue Mar 31 2020 19:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.51027 * 2 1 4 4 N 1.46501 * 109.47077 * 60.10794 * 3 2 1 5 5 C 1.34772 * 120.00215 * 180.02562 * 4 3 2 6 6 O 1.21604 * 120.00132 * 359.97438 * 5 4 3 7 7 C 1.47430 * 120.00062 * 179.97438 * 5 4 3 8 8 C 1.41202 * 126.43928 * 359.68754 * 7 5 4 9 9 N 1.30285 * 108.02943 * 179.97438 * 8 7 5 10 10 N 1.40518 * 109.02084 * 0.47586 * 9 8 7 11 11 C 1.34024 * 108.16286 * 359.53731 * 10 9 8 12 12 C 1.51386 * 110.33797 * 180.25953 * 11 10 9 13 13 C 1.54574 * 104.14721 * 16.45890 * 12 11 10 14 14 C 1.47245 * 140.81667 * 179.42746 * 10 9 8 15 15 C 1.53296 * 109.51343 * 239.85211 * 2 1 3 16 16 N 1.47155 * 108.38177 * 292.37811 * 15 2 1 17 17 C 1.36941 * 120.97883 * 129.48751 * 16 15 2 18 18 H 1.08003 * 119.99321 * 206.20415 * 17 16 15 19 19 C 1.38813 * 120.00092 * 26.20602 * 17 16 15 20 20 N 1.31617 * 120.00396 * 16.93122 * 19 17 16 21 21 Si 1.86802 * 119.99573 * 196.92891 * 19 17 16 22 22 H 1.48505 * 109.47405 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47152 * 120.00095 * 21 19 17 24 24 H 1.48505 * 109.47028 * 240.00035 * 21 19 17 25 25 C 1.47148 * 118.03767 * 309.45938 * 16 15 2 26 26 C 1.53302 * 108.38216 * 50.53749 * 25 16 15 27 27 O 1.42955 * 109.51328 * 120.10494 * 2 1 3 28 28 H 1.08998 * 109.47336 * 299.89077 * 1 2 3 29 29 H 1.08996 * 109.47719 * 59.89544 * 1 2 3 30 30 H 1.09004 * 109.47087 * 179.89995 * 1 2 3 31 31 H 1.08999 * 109.46999 * 180.09889 * 3 2 1 32 32 H 1.08993 * 109.47783 * 300.10626 * 3 2 1 33 33 H 0.97002 * 119.99716 * 359.97438 * 4 3 2 34 34 H 1.08000 * 125.98397 * 0.09805 * 8 7 5 35 35 H 1.09000 * 110.49746 * 135.12281 * 12 11 10 36 36 H 1.09001 * 110.49653 * 257.65936 * 12 11 10 37 37 H 1.08998 * 110.98968 * 93.07172 * 13 12 11 38 38 H 1.09001 * 110.98570 * 216.89202 * 13 12 11 39 39 H 1.08999 * 110.23195 * 43.96046 * 14 10 9 40 40 H 1.09002 * 110.30313 * 282.04949 * 14 10 9 41 41 H 1.09006 * 109.67764 * 52.09570 * 15 2 1 42 42 H 1.08995 * 109.68252 * 172.61426 * 15 2 1 43 43 H 0.96988 * 119.99920 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.68089 * 290.82070 * 25 16 15 45 45 H 1.08994 * 109.68449 * 170.26152 * 25 16 15 46 46 H 1.09003 * 109.51104 * 67.62096 * 26 25 16 47 47 H 1.09003 * 109.51218 * 187.72433 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5552 2.1323 1.1975 5 6 1.8816 3.4224 1.4108 6 8 2.5797 4.0135 0.6095 7 6 1.3923 4.1171 2.6156 8 6 0.5735 3.5675 3.6262 9 7 0.3594 4.4921 4.5189 10 7 1.0142 5.6708 4.1235 11 6 1.6432 5.4307 2.9646 12 6 2.3729 6.6713 2.4952 13 6 2.4384 7.5692 3.7517 14 6 1.2273 7.0602 4.5621 15 6 2.0420 -0.7257 -1.2495 16 7 1.6959 -2.1512 -1.1327 17 6 1.0615 -2.8083 -2.1530 18 1 0.4485 -3.6718 -1.9404 19 6 1.2064 -2.3648 -3.4604 20 7 2.1885 -1.5461 -3.7726 21 14 0.0073 -2.9299 -4.7766 22 1 -0.9976 -3.8413 -4.1724 23 1 -0.6808 -1.7498 -5.3589 24 1 0.7475 -3.6485 -5.8448 25 6 2.0522 -2.8497 0.1124 26 6 1.5397 -2.0205 1.2956 27 8 2.0075 -0.6759 1.1657 28 1 -0.3634 0.5121 0.8909 29 1 -0.3634 0.5154 -0.8890 30 1 -0.3633 -1.0277 -0.0018 31 1 3.1309 1.4414 -0.0018 32 1 1.6765 1.9568 -0.8889 33 1 0.9980 1.6609 1.8365 34 1 0.1932 2.5571 3.6553 35 1 3.3768 6.4177 2.1546 36 1 1.8143 7.1646 1.6998 37 1 3.3684 7.4097 4.2974 38 1 2.3177 8.6198 3.4874 39 1 1.4487 7.0889 5.6290 40 1 0.3469 7.6648 4.3442 41 1 1.5703 -0.3049 -2.1375 42 1 3.1239 -0.6146 -1.3210 43 1 2.2894 -1.2359 -4.6860 44 1 3.1352 -2.9530 0.1784 45 1 1.5873 -3.8355 0.1263 46 1 0.4497 -2.0278 1.3003 47 1 1.9107 -2.4475 2.2273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107985793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:23 Heat of formation + Delta-G solvation = 36.661389 kcal Electronic energy + Delta-G solvation = -29368.146412 eV Core-core repulsion = 25361.001097 eV Total energy + Delta-G solvation = -4007.145315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.02445 -39.48592 -38.47089 -36.61676 -34.81429 -34.26001 -31.87471 -31.24716 -31.02147 -29.72285 -27.96811 -27.78119 -26.27029 -25.30588 -23.21003 -22.70958 -22.21516 -21.22456 -20.42547 -19.71495 -18.65177 -17.62230 -17.00399 -16.78057 -15.83791 -15.35600 -15.22718 -14.96935 -14.79448 -14.46740 -14.32080 -14.17154 -13.98585 -13.88023 -13.54138 -13.48202 -13.42659 -12.93200 -12.69540 -12.45285 -12.33707 -12.03240 -11.83137 -11.64145 -11.54494 -11.16726 -11.08383 -10.99421 -10.80312 -10.63822 -10.28060 -10.21494 -9.96509 -9.69356 -9.58883 -9.48475 -9.01036 -8.88387 -8.55359 -8.52057 -6.72230 -5.83007 -3.26232 1.40072 1.90831 2.06771 3.34285 3.42548 3.44312 3.50242 3.61013 3.67845 4.09092 4.23737 4.28994 4.34694 4.45217 4.66864 4.90346 4.97967 5.10081 5.12638 5.20157 5.30937 5.36107 5.46739 5.48019 5.52468 5.55804 5.71345 5.73162 5.95440 5.97722 6.09168 6.15514 6.18667 6.26309 6.36823 6.42304 6.51406 6.63453 6.75808 6.82749 6.85811 7.10324 7.41466 7.49953 7.72657 7.85942 7.92319 8.34645 8.55114 9.12501 9.75636 10.32863 11.24925 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.002566 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.271924 B =10910.737983 C =11465.188006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 C 0.143 3.857 4 N -0.713 5.713 5 C 0.590 3.410 6 O -0.554 6.554 7 C -0.275 4.275 8 C 0.086 3.914 9 N -0.278 5.278 10 N -0.387 5.387 11 C 0.136 3.864 12 C -0.070 4.070 13 C -0.134 4.134 14 C 0.126 3.874 15 C 0.160 3.840 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.383 6.383 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.400 0.600 34 H 0.196 0.804 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.029 0.971 43 H 0.255 0.745 44 H 0.025 0.975 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 16.255 16.364 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.019 3.981 4 N -0.364 5.364 5 C 0.377 3.623 6 O -0.433 6.433 7 C -0.290 4.290 8 C -0.101 4.101 9 N -0.096 5.096 10 N -0.166 5.166 11 C 0.002 3.998 12 C -0.109 4.109 13 C -0.172 4.172 14 C 0.006 3.994 15 C 0.033 3.967 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.303 6.303 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.235 0.765 34 H 0.212 0.788 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.221 17.152 17.065 24.297 hybrid contribution -0.685 -1.060 -1.313 1.821 sum -2.906 16.091 15.753 22.705 Atomic orbital electron populations 1.22207 0.95789 1.03161 1.00776 1.22550 0.93547 0.90729 0.89450 1.21326 0.99864 0.89748 0.87170 1.45717 1.53632 1.11294 1.25761 1.17206 0.79616 0.81360 0.84137 1.90749 1.39070 1.66559 1.46949 1.19550 1.13726 0.93706 1.01976 1.24115 0.96000 0.99129 0.90888 1.77201 1.19375 0.89909 1.23141 1.50095 1.38258 1.09798 1.18468 1.22473 0.93825 0.95053 0.88414 1.21001 1.02312 0.89705 0.97873 1.22875 0.97777 1.00900 0.95655 1.22446 0.99716 0.76052 1.01204 1.21290 0.97824 0.83875 0.93693 1.44012 1.68623 1.05013 1.13809 1.19196 1.21520 1.12116 0.85373 0.91400 1.25036 0.97311 1.00146 0.97087 1.70021 1.29196 1.36863 1.18429 0.86234 0.80758 0.78018 0.81827 1.20279 1.21468 1.21685 1.21597 0.97535 0.95207 0.87399 1.23031 0.98295 0.83197 0.98679 1.87818 1.72906 1.25757 1.43807 0.93907 0.91896 0.90863 0.90890 0.90112 0.76546 0.78751 0.87572 0.87931 0.89194 0.87690 0.88687 0.88957 0.88556 0.95259 0.93491 0.95679 0.92097 0.93388 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 7.91 37.16 0.29 -2.48 16 2 C 0.08 1.46 0.76 -90.47 -0.07 1.39 16 3 C 0.14 2.50 4.82 -4.04 -0.02 2.48 16 4 N -0.71 -10.81 5.14 -61.39 -0.32 -11.12 16 5 C 0.59 9.45 7.81 -12.52 -0.10 9.35 16 6 O -0.55 -10.53 16.90 5.27 0.09 -10.44 16 7 C -0.27 -3.76 6.13 -105.04 -0.64 -4.40 16 8 C 0.09 1.04 11.50 -17.08 -0.20 0.84 16 9 N -0.28 -3.56 12.64 30.82 0.39 -3.17 16 10 N -0.39 -4.25 4.81 -55.14 -0.27 -4.51 16 11 C 0.14 1.62 7.31 -81.31 -0.59 1.02 16 12 C -0.07 -0.57 6.86 -26.72 -0.18 -0.75 16 13 C -0.13 -0.58 7.18 -25.19 -0.18 -0.77 16 14 C 0.13 0.76 7.78 -2.92 -0.02 0.74 16 15 C 0.16 3.72 4.12 -3.53 -0.01 3.71 16 16 N -0.59 -14.37 2.56 -171.82 -0.44 -14.81 16 17 C -0.25 -6.71 9.65 -15.06 -0.15 -6.86 16 18 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 19 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 20 N -0.90 -25.65 11.14 55.49 0.62 -25.04 16 21 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.11 2.24 6.74 -3.53 -0.02 2.21 16 26 C 0.05 0.79 6.60 37.31 0.25 1.04 16 27 O -0.38 -7.06 9.97 -35.23 -0.35 -7.41 16 28 H 0.04 0.61 6.87 -51.93 -0.36 0.25 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.37 6.11 -51.93 -0.32 1.05 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.40 5.28 6.16 -40.82 -0.25 5.03 16 34 H 0.20 1.75 7.50 -52.49 -0.39 1.36 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 2.48 6.14 -51.93 -0.32 2.16 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 46 H 0.05 0.80 6.25 -51.93 -0.32 0.47 16 47 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -34.14 375.07 -8.39 -42.53 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.00 Total: 4.54 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -1.74 Total: 7.53 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.01 Total: -58.65 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.26 Total: -17.85 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.14 -8.39 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107985793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.192 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds