Wall clock time and date at job start Tue Mar 31 2020 19:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.51027 * 2 1 4 4 N 1.46501 * 109.47077 * 60.10794 * 3 2 1 5 5 C 1.34772 * 120.00215 * 180.02562 * 4 3 2 6 6 O 1.21604 * 120.00132 * 359.97438 * 5 4 3 7 7 C 1.47430 * 120.00062 * 179.97438 * 5 4 3 8 8 C 1.41202 * 126.43928 * 359.68754 * 7 5 4 9 9 N 1.30285 * 108.02943 * 179.97438 * 8 7 5 10 10 N 1.40518 * 109.02084 * 0.47586 * 9 8 7 11 11 C 1.34024 * 108.16286 * 359.53731 * 10 9 8 12 12 C 1.51386 * 110.33797 * 180.25953 * 11 10 9 13 13 C 1.54574 * 104.14721 * 16.45890 * 12 11 10 14 14 C 1.47245 * 140.81667 * 179.42746 * 10 9 8 15 15 C 1.53296 * 109.51343 * 239.85211 * 2 1 3 16 16 N 1.47155 * 108.38177 * 292.37811 * 15 2 1 17 17 C 1.36941 * 120.97883 * 129.48751 * 16 15 2 18 18 H 1.08003 * 119.99321 * 206.20415 * 17 16 15 19 19 C 1.38813 * 120.00092 * 26.20602 * 17 16 15 20 20 N 1.31617 * 120.00396 * 16.93122 * 19 17 16 21 21 Si 1.86802 * 119.99573 * 196.92891 * 19 17 16 22 22 H 1.48505 * 109.47405 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47152 * 120.00095 * 21 19 17 24 24 H 1.48505 * 109.47028 * 240.00035 * 21 19 17 25 25 C 1.47148 * 118.03767 * 309.45938 * 16 15 2 26 26 C 1.53302 * 108.38216 * 50.53749 * 25 16 15 27 27 O 1.42955 * 109.51328 * 120.10494 * 2 1 3 28 28 H 1.08998 * 109.47336 * 299.89077 * 1 2 3 29 29 H 1.08996 * 109.47719 * 59.89544 * 1 2 3 30 30 H 1.09004 * 109.47087 * 179.89995 * 1 2 3 31 31 H 1.08999 * 109.46999 * 180.09889 * 3 2 1 32 32 H 1.08993 * 109.47783 * 300.10626 * 3 2 1 33 33 H 0.97002 * 119.99716 * 359.97438 * 4 3 2 34 34 H 1.08000 * 125.98397 * 0.09805 * 8 7 5 35 35 H 1.09000 * 110.49746 * 135.12281 * 12 11 10 36 36 H 1.09001 * 110.49653 * 257.65936 * 12 11 10 37 37 H 1.08998 * 110.98968 * 93.07172 * 13 12 11 38 38 H 1.09001 * 110.98570 * 216.89202 * 13 12 11 39 39 H 1.08999 * 110.23195 * 43.96046 * 14 10 9 40 40 H 1.09002 * 110.30313 * 282.04949 * 14 10 9 41 41 H 1.09006 * 109.67764 * 52.09570 * 15 2 1 42 42 H 1.08995 * 109.68252 * 172.61426 * 15 2 1 43 43 H 0.96988 * 119.99920 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.68089 * 290.82070 * 25 16 15 45 45 H 1.08994 * 109.68449 * 170.26152 * 25 16 15 46 46 H 1.09003 * 109.51104 * 67.62096 * 26 25 16 47 47 H 1.09003 * 109.51218 * 187.72433 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5552 2.1323 1.1975 5 6 1.8816 3.4224 1.4108 6 8 2.5797 4.0135 0.6095 7 6 1.3923 4.1171 2.6156 8 6 0.5735 3.5675 3.6262 9 7 0.3594 4.4921 4.5189 10 7 1.0142 5.6708 4.1235 11 6 1.6432 5.4307 2.9646 12 6 2.3729 6.6713 2.4952 13 6 2.4384 7.5692 3.7517 14 6 1.2273 7.0602 4.5621 15 6 2.0420 -0.7257 -1.2495 16 7 1.6959 -2.1512 -1.1327 17 6 1.0615 -2.8083 -2.1530 18 1 0.4485 -3.6718 -1.9404 19 6 1.2064 -2.3648 -3.4604 20 7 2.1885 -1.5461 -3.7726 21 14 0.0073 -2.9299 -4.7766 22 1 -0.9976 -3.8413 -4.1724 23 1 -0.6808 -1.7498 -5.3589 24 1 0.7475 -3.6485 -5.8448 25 6 2.0522 -2.8497 0.1124 26 6 1.5397 -2.0205 1.2956 27 8 2.0075 -0.6759 1.1657 28 1 -0.3634 0.5121 0.8909 29 1 -0.3634 0.5154 -0.8890 30 1 -0.3633 -1.0277 -0.0018 31 1 3.1309 1.4414 -0.0018 32 1 1.6765 1.9568 -0.8889 33 1 0.9980 1.6609 1.8365 34 1 0.1932 2.5571 3.6553 35 1 3.3768 6.4177 2.1546 36 1 1.8143 7.1646 1.6998 37 1 3.3684 7.4097 4.2974 38 1 2.3177 8.6198 3.4874 39 1 1.4487 7.0889 5.6290 40 1 0.3469 7.6648 4.3442 41 1 1.5703 -0.3049 -2.1375 42 1 3.1239 -0.6146 -1.3210 43 1 2.2894 -1.2359 -4.6860 44 1 3.1352 -2.9530 0.1784 45 1 1.5873 -3.8355 0.1263 46 1 0.4497 -2.0278 1.3003 47 1 1.9107 -2.4475 2.2273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107985793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:22 Heat of formation + Delta-G solvation = 12.472896 kcal Electronic energy + Delta-G solvation = -29369.195304 eV Core-core repulsion = 25361.001097 eV Total energy + Delta-G solvation = -4008.194207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.85442 -40.94862 -39.86254 -37.29463 -36.48920 -35.84102 -33.28129 -33.15429 -31.95089 -30.43745 -29.56083 -28.72647 -27.93053 -26.77383 -24.96610 -23.63770 -23.11555 -22.59509 -21.38335 -20.82583 -20.17305 -18.92762 -18.60550 -17.50545 -17.38164 -16.84844 -16.70009 -16.18922 -16.04303 -15.66730 -15.55504 -15.45946 -15.20283 -15.17834 -14.72522 -14.60090 -14.56663 -14.19560 -14.11596 -13.84306 -13.36975 -13.14900 -13.02235 -12.90407 -12.79095 -12.50777 -12.49734 -12.40818 -12.11369 -12.09924 -12.01238 -11.92418 -11.80472 -11.12964 -10.92624 -10.72222 -10.47573 -10.35261 -10.13926 -9.60703 -8.69765 -7.87733 -5.34392 0.48394 1.10556 1.22957 1.46203 1.48605 1.58471 2.25189 2.45282 2.50334 2.83224 3.07251 3.27080 3.47595 3.53668 3.65500 3.88788 3.93803 4.00831 4.06706 4.14404 4.15533 4.36722 4.45719 4.49096 4.49566 4.54521 4.61798 4.65009 4.73656 4.77023 4.83698 4.88546 4.99595 5.00978 5.08044 5.08877 5.15592 5.23903 5.36583 5.38958 5.45943 5.56508 5.63961 5.67067 6.31640 6.40629 6.52492 6.68971 7.08983 7.32118 7.78320 8.32396 9.18046 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.002566 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.271924 B =10910.737983 C =11465.188006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.095 3.905 3 C 0.153 3.847 4 N -0.702 5.702 5 C 0.590 3.410 6 O -0.592 6.592 7 C -0.308 4.308 8 C 0.091 3.909 9 N -0.303 5.303 10 N -0.385 5.385 11 C 0.130 3.870 12 C -0.076 4.076 13 C -0.116 4.116 14 C 0.113 3.887 15 C 0.168 3.832 16 N -0.607 5.607 17 C -0.257 4.257 18 H 0.074 0.926 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.264 1.264 23 H -0.290 1.290 24 H -0.295 1.295 25 C 0.101 3.899 26 C 0.052 3.948 27 O -0.385 6.385 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.412 0.588 34 H 0.219 0.781 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.140 0.860 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.067 0.933 42 H -0.008 1.008 43 H 0.250 0.750 44 H 0.012 0.988 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.764 17.293 18.819 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.054 3.946 3 C 0.028 3.972 4 N -0.354 5.354 5 C 0.380 3.620 6 O -0.474 6.474 7 C -0.323 4.323 8 C -0.096 4.096 9 N -0.122 5.122 10 N -0.164 5.164 11 C -0.005 4.005 12 C -0.115 4.115 13 C -0.154 4.154 14 C -0.005 4.005 15 C 0.041 3.959 16 N -0.331 5.331 17 C -0.387 4.387 18 H 0.091 0.909 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.794 3.206 22 H -0.188 1.188 23 H -0.217 1.217 24 H -0.223 1.223 25 C -0.024 4.024 26 C -0.025 4.025 27 O -0.304 6.304 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.249 0.751 34 H 0.236 0.764 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.158 0.842 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.010 0.990 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.823 18.179 19.597 27.002 hybrid contribution -0.129 -1.375 -2.012 2.440 sum -3.952 16.804 17.585 24.642 Atomic orbital electron populations 1.22115 0.93968 1.02839 1.02152 1.22178 0.94636 0.90468 0.87353 1.21005 0.98681 0.89437 0.88069 1.45506 1.53605 1.11173 1.25071 1.17558 0.78836 0.81189 0.84451 1.90721 1.40892 1.67340 1.48461 1.19483 1.15943 0.94936 1.01922 1.24470 0.95139 1.00066 0.89907 1.77116 1.20382 0.90824 1.23833 1.50545 1.37062 1.10759 1.18019 1.23060 0.93374 0.95461 0.88638 1.21195 1.01310 0.89049 0.99933 1.22931 0.97415 1.01827 0.93192 1.22951 1.01299 0.73819 1.02464 1.21049 0.95387 0.84349 0.95098 1.44263 1.68628 1.05573 1.14649 1.19536 1.21098 1.11956 0.86065 0.90865 1.25787 0.98838 1.00815 0.99167 1.70187 1.31054 1.38563 1.18422 0.85233 0.78847 0.77476 0.79056 1.18773 1.21719 1.22255 1.21822 0.97002 0.96359 0.87201 1.23111 0.99145 0.81803 0.98436 1.87830 1.73243 1.26447 1.42879 0.90393 0.92669 0.91918 0.92812 0.90984 0.75131 0.76443 0.88550 0.87150 0.88470 0.84239 0.87124 0.87041 0.91477 0.98975 0.94082 0.97037 0.90977 0.92027 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 7.91 71.98 0.57 -4.49 16 2 C 0.09 3.54 0.76 -10.70 -0.01 3.53 16 3 C 0.15 5.50 4.82 86.38 0.42 5.92 16 4 N -0.70 -21.00 5.14 -466.38 -2.40 -23.40 16 5 C 0.59 19.03 7.81 86.67 0.68 19.71 16 6 O -0.59 -23.18 16.90 -4.04 -0.07 -23.25 16 7 C -0.31 -8.24 6.13 -20.13 -0.12 -8.36 16 8 C 0.09 2.07 11.50 85.65 0.98 3.05 16 9 N -0.30 -7.28 12.64 -56.42 -0.71 -7.99 16 10 N -0.38 -7.73 4.81 -328.37 -1.58 -9.30 16 11 C 0.13 2.96 7.31 42.44 0.31 3.27 16 12 C -0.08 -1.12 6.86 30.60 0.21 -0.91 16 13 C -0.12 -0.64 7.18 31.59 0.23 -0.42 16 14 C 0.11 1.02 7.78 86.70 0.67 1.70 16 15 C 0.17 8.15 4.12 86.35 0.36 8.51 16 16 N -0.61 -29.94 2.56 -697.53 -1.79 -31.73 16 17 C -0.26 -13.74 9.65 84.03 0.81 -12.93 16 18 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 19 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 20 N -0.94 -55.43 11.14 21.65 0.24 -55.19 16 21 Si 0.97 44.38 29.59 68.60 2.03 46.41 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 25 C 0.10 4.10 6.74 86.36 0.58 4.68 16 26 C 0.05 1.67 6.60 72.08 0.48 2.15 16 27 O -0.38 -13.62 9.97 -148.98 -1.49 -15.11 16 28 H 0.08 2.01 6.87 -2.39 -0.02 2.00 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 2.22 6.11 -2.38 -0.01 2.21 16 31 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.41 10.16 6.16 -92.71 -0.57 9.59 16 34 H 0.22 3.44 7.50 -2.91 -0.02 3.42 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 3.64 6.14 -2.38 -0.01 3.63 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.25 14.38 8.31 -92.72 -0.77 13.61 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 46 H 0.06 1.85 6.25 -2.39 -0.01 1.83 16 47 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -77.17 375.07 1.24 -75.93 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.42 Total: 20.59 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 6.58 Total: 23.04 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -6.24 Total: -127.61 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -1.55 Total: -38.36 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -77.17 1.24 -75.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107985793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.407 kcal (2) G-P(sol) polarization free energy of solvation -77.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds