Wall clock time and date at job start Tue Mar 31 2020 19:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.50727 * 2 1 4 4 N 1.46501 * 109.47346 * 59.90184 * 3 2 1 5 5 C 1.34777 * 120.00001 * 179.97438 * 4 3 2 6 6 O 1.21680 * 119.99981 * 359.72203 * 5 4 3 7 7 C 1.46767 * 119.99790 * 179.72375 * 5 4 3 8 8 C 1.36553 * 126.83856 * 180.02562 * 7 5 4 9 9 N 1.33171 * 107.79191 * 180.02562 * 8 7 5 10 10 C 1.31364 * 109.77379 * 0.08282 * 9 8 7 11 11 N 1.34270 * 108.97478 * 359.58309 * 10 9 8 12 12 C 1.46999 * 111.32829 * 180.02562 * 11 10 9 13 13 C 1.54395 * 105.54513 * 343.28165 * 12 11 10 14 14 C 1.51650 * 141.06777 * 179.78475 * 10 9 8 15 15 C 1.53295 * 109.50803 * 239.90165 * 2 1 3 16 16 N 1.47147 * 108.38448 * 292.32184 * 15 2 1 17 17 C 1.36942 * 120.98236 * 129.49056 * 16 15 2 18 18 H 1.07998 * 120.00042 * 206.21876 * 17 16 15 19 19 C 1.38811 * 119.99778 * 26.22184 * 17 16 15 20 20 N 1.31622 * 119.99800 * 16.91763 * 19 17 16 21 21 Si 1.86802 * 119.99819 * 196.92029 * 19 17 16 22 22 H 1.48489 * 109.47221 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46937 * 120.00005 * 21 19 17 24 24 H 1.48504 * 109.46891 * 239.99722 * 21 19 17 25 25 C 1.47155 * 118.03933 * 309.46748 * 16 15 2 26 26 C 1.53293 * 108.38196 * 50.53513 * 25 16 15 27 27 O 1.42959 * 109.22652 * 307.69833 * 26 25 16 28 28 H 1.08995 * 109.47713 * 60.00207 * 1 2 3 29 29 H 1.09003 * 109.46779 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47030 * 299.99562 * 1 2 3 31 31 H 1.09001 * 109.47461 * 299.90101 * 3 2 1 32 32 H 1.09006 * 109.46994 * 179.89915 * 3 2 1 33 33 H 0.97000 * 120.00100 * 359.72557 * 4 3 2 34 34 H 1.07999 * 126.10375 * 0.04102 * 8 7 5 35 35 H 1.09001 * 110.38209 * 224.17032 * 12 11 10 36 36 H 1.08998 * 110.04527 * 102.21497 * 12 11 10 37 37 H 1.09003 * 110.98485 * 267.34438 * 13 12 11 38 38 H 1.08999 * 110.98423 * 143.54314 * 13 12 11 39 39 H 1.08999 * 110.47606 * 315.25108 * 14 10 9 40 40 H 1.09008 * 110.47841 * 77.86834 * 14 10 9 41 41 H 1.08998 * 109.68455 * 52.04966 * 15 2 1 42 42 H 1.09003 * 109.67499 * 172.60484 * 15 2 1 43 43 H 0.97004 * 119.99690 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.68240 * 170.25601 * 25 16 15 45 45 H 1.09002 * 109.68244 * 290.77593 * 25 16 15 46 46 H 1.09006 * 109.51270 * 67.62196 * 26 25 16 47 47 H 1.09007 * 109.51406 * 187.72115 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5511 2.1338 1.1950 5 6 1.8777 3.4239 1.4083 6 8 2.5834 4.0127 0.6109 7 6 1.3820 4.1185 2.6023 8 6 1.6238 5.4155 2.9546 9 7 0.9930 5.6494 4.1038 10 6 0.3660 4.5636 4.4957 11 7 0.5714 3.5910 3.5930 12 6 -0.1104 2.3481 3.9818 13 6 -0.4452 2.5110 5.4801 14 6 -0.5103 4.0486 5.6211 15 6 2.0420 -0.7246 -1.2501 16 7 1.6970 -2.1504 -1.1340 17 6 1.0627 -2.8075 -2.1543 18 1 0.4503 -3.6714 -1.9420 19 6 1.2068 -2.3633 -3.4615 20 7 2.1883 -1.5437 -3.7736 21 14 0.0078 -2.9288 -4.7777 22 1 -0.9961 -3.8410 -4.1737 23 1 -0.6813 -1.7489 -5.3593 24 1 0.7483 -3.6462 -5.8465 25 6 2.0543 -2.8494 0.1106 26 6 1.5418 -2.0213 1.2944 27 8 2.0085 -0.6762 1.1652 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6794 1.9557 -0.8909 32 1 3.1310 1.4414 0.0018 33 1 0.9889 1.6643 1.8309 34 1 2.2201 6.1249 2.4000 35 1 0.5475 1.4918 3.8332 36 1 -1.0253 2.2268 3.4019 37 1 0.3456 2.0949 6.1043 38 1 -1.4071 2.0564 5.7168 39 1 -0.1128 4.3601 6.5870 40 1 -1.5348 4.4000 5.4981 41 1 1.5697 -0.3037 -2.1377 42 1 3.1240 -0.6133 -1.3216 43 1 2.2888 -1.2330 -4.6870 44 1 1.5901 -3.8355 0.1241 45 1 3.1375 -2.9526 0.1758 46 1 0.4517 -2.0294 1.2996 47 1 1.9135 -2.4485 2.2258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108001397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:08 Heat of formation + Delta-G solvation = 20.389495 kcal Electronic energy + Delta-G solvation = -29960.560487 eV Core-core repulsion = 25952.709570 eV Total energy + Delta-G solvation = -4007.850917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.77114 -39.70233 -38.71044 -36.76934 -35.01517 -34.42318 -32.55974 -31.52871 -31.32100 -29.16022 -28.08982 -27.90424 -26.57407 -25.66544 -23.33198 -22.66940 -22.59518 -21.15997 -20.67552 -20.09820 -18.82336 -17.81092 -17.12143 -16.94264 -16.03083 -15.60342 -15.52332 -15.24945 -14.79098 -14.68890 -14.36161 -14.17874 -14.13330 -13.99930 -13.76056 -13.63925 -13.51198 -13.08827 -12.86228 -12.68017 -12.57336 -12.10500 -12.00603 -11.71181 -11.60125 -11.28779 -11.10204 -10.90988 -10.74110 -10.43845 -10.40699 -10.30026 -10.11969 -9.93589 -9.91956 -9.63788 -9.16563 -9.02455 -8.61087 -8.56047 -6.82010 -5.91168 -3.34966 1.18897 2.25503 2.66225 3.16032 3.29060 3.34701 3.37025 3.38742 3.43833 3.93352 4.12683 4.17605 4.25594 4.37437 4.58886 4.85383 4.91697 5.03726 5.12036 5.17706 5.23793 5.27182 5.36123 5.39996 5.40806 5.43864 5.55230 5.79297 5.83364 5.84269 5.91455 5.98751 6.03291 6.20633 6.31739 6.41589 6.47393 6.57008 6.63799 6.66162 6.72716 6.98592 7.38447 7.47268 7.64473 7.76502 7.78497 8.19482 8.25941 9.03744 9.66787 10.23592 11.16864 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.002996 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.568204 B = 9344.605735 C = 9973.219590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.139 3.861 4 N -0.716 5.716 5 C 0.589 3.411 6 O -0.529 6.529 7 C -0.065 4.065 8 C 0.071 3.929 9 N -0.487 5.487 10 C 0.208 3.792 11 N -0.463 5.463 12 C 0.089 3.911 13 C -0.127 4.127 14 C -0.043 4.043 15 C 0.160 3.840 16 N -0.591 5.591 17 C -0.256 4.256 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.900 5.900 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.386 6.386 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.395 0.605 34 H 0.189 0.811 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.031 0.969 43 H 0.256 0.744 44 H 0.062 0.938 45 H 0.026 0.974 46 H 0.048 0.952 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 6.589 19.030 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 C 0.015 3.985 4 N -0.367 5.367 5 C 0.375 3.625 6 O -0.406 6.406 7 C -0.179 4.179 8 C -0.083 4.083 9 N -0.206 5.206 10 C -0.054 4.054 11 N -0.147 5.147 12 C -0.032 4.032 13 C -0.165 4.165 14 C -0.082 4.082 15 C 0.034 3.966 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.544 5.544 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.216 1.216 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.305 6.305 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.230 0.770 34 H 0.206 0.794 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.044 0.956 46 H 0.066 0.934 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.652 7.602 18.636 21.197 hybrid contribution -0.893 -1.499 -1.210 2.124 sum -7.545 6.103 17.426 19.946 Atomic orbital electron populations 1.22204 0.95814 1.03256 1.00541 1.22571 0.93478 0.90574 0.89715 1.21437 1.00164 0.89905 0.86958 1.45952 1.53097 1.11338 1.26313 1.16906 0.80384 0.81524 0.83735 1.90855 1.37813 1.66416 1.45527 1.21023 1.05666 0.96535 0.94649 1.22618 0.99919 0.92782 0.93030 1.69817 1.12798 1.24960 1.13011 1.24501 1.00857 0.85745 0.94307 1.46517 1.36400 1.13283 1.18548 1.22632 0.98078 0.85233 0.97285 1.22762 1.04608 0.95527 0.93647 1.20763 0.98361 0.93844 0.95252 1.21285 0.97925 0.83943 0.93484 1.44008 1.68632 1.04882 1.13891 1.19188 1.21753 1.12215 0.85356 0.91344 1.25052 0.97277 1.00039 0.97126 1.70022 1.29149 1.36681 1.18551 0.86223 0.80710 0.78051 0.81787 1.20251 1.21422 1.21589 1.21590 0.97602 0.95210 0.87327 1.23046 0.98234 0.83089 0.98852 1.87809 1.73009 1.25860 1.43854 0.91712 0.90619 0.94504 0.89716 0.90452 0.76953 0.79439 0.88386 0.88523 0.89012 0.87579 0.88011 0.88163 0.88460 0.95129 0.93396 0.91997 0.95603 0.93428 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 7.92 37.16 0.29 -2.32 16 2 C 0.08 1.40 0.76 -90.47 -0.07 1.33 16 3 C 0.14 2.37 4.82 -4.04 -0.02 2.35 16 4 N -0.72 -10.70 5.15 -61.59 -0.32 -11.02 16 5 C 0.59 9.50 7.79 -12.81 -0.10 9.40 16 6 O -0.53 -10.17 16.90 5.21 0.09 -10.09 16 7 C -0.06 -0.91 7.08 -82.04 -0.58 -1.49 16 8 C 0.07 0.99 11.65 -17.58 -0.20 0.78 16 9 N -0.49 -6.65 11.21 -10.29 -0.12 -6.76 16 10 C 0.21 2.27 8.56 -154.92 -1.33 0.94 16 11 N -0.46 -5.09 3.58 -108.27 -0.39 -5.48 16 12 C 0.09 0.61 6.59 -3.04 -0.02 0.59 16 13 C -0.13 -0.50 7.18 -25.19 -0.18 -0.68 16 14 C -0.04 -0.24 6.86 -26.61 -0.18 -0.42 16 15 C 0.16 3.64 4.11 -3.54 -0.01 3.62 16 16 N -0.59 -13.96 2.57 -171.83 -0.44 -14.40 16 17 C -0.26 -6.64 9.65 -15.06 -0.15 -6.78 16 18 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 20 N -0.90 -25.22 11.14 55.49 0.62 -24.60 16 21 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.11 2.15 6.73 -3.53 -0.02 2.13 16 26 C 0.05 0.74 6.60 37.31 0.25 0.99 16 27 O -0.39 -6.76 9.99 -35.23 -0.35 -7.12 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.34 6.12 -51.93 -0.32 1.02 16 30 H 0.04 0.49 6.85 -51.93 -0.36 0.13 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.40 5.15 4.96 -40.82 -0.20 4.95 16 34 H 0.19 2.35 8.06 -52.49 -0.42 1.93 16 35 H 0.10 0.68 7.36 -51.93 -0.38 0.30 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.74 6.25 -51.93 -0.32 0.41 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -33.22 372.15 -9.68 -42.90 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.94 Total: 4.64 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -2.41 Total: 10.46 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.64 Total: -62.26 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.26 Total: -17.20 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.22 -9.68 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108001397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.287 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds