Wall clock time and date at job start Tue Mar 31 2020 19:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.51308 * 2 1 4 4 N 1.46508 * 109.47074 * 60.09834 * 3 2 1 5 5 C 1.34773 * 119.99799 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00492 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99547 * 180.02562 * 5 4 3 8 8 H 1.08997 * 115.55408 * 34.41616 * 7 5 4 9 9 C 1.53010 * 117.49823 * 248.74786 * 7 5 4 10 10 C 1.53001 * 117.49536 * 180.09233 * 7 5 4 11 11 H 1.08997 * 117.49924 * 359.97438 * 10 7 5 12 12 C 1.50704 * 117.49731 * 215.00160 * 10 7 5 13 13 C 1.34671 * 126.58906 * 324.68338 * 12 10 7 14 14 N 1.34132 * 108.01779 * 179.87278 * 13 12 10 15 15 C 1.30498 * 109.25615 * 0.40129 * 14 13 12 16 16 N 1.35036 * 108.69990 * 359.75348 * 15 14 13 17 17 H 0.97003 * 126.39689 * 179.97438 * 16 15 14 18 18 C 1.53287 * 109.55746 * 239.87366 * 2 1 3 19 19 N 1.47155 * 108.38454 * 292.35164 * 18 2 1 20 20 C 1.36944 * 120.98132 * 129.48462 * 19 18 2 21 21 H 1.07997 * 119.99735 * 206.21159 * 20 19 18 22 22 C 1.38809 * 119.99954 * 26.20857 * 20 19 18 23 23 N 1.31621 * 119.99975 * 16.93076 * 22 20 19 24 24 Si 1.86796 * 120.00043 * 196.92966 * 22 20 19 25 25 H 1.48510 * 109.47133 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47299 * 120.00010 * 24 22 20 27 27 H 1.48499 * 109.47377 * 240.00313 * 24 22 20 28 28 C 1.47153 * 118.03486 * 309.46492 * 19 18 2 29 29 C 1.53293 * 108.38393 * 50.53272 * 28 19 18 30 30 O 1.42959 * 109.22603 * 307.69701 * 29 28 19 31 31 H 1.08998 * 109.46963 * 60.00174 * 1 2 3 32 32 H 1.08994 * 109.47062 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47037 * 300.00279 * 1 2 3 34 34 H 1.08996 * 109.46993 * 300.10560 * 3 2 1 35 35 H 1.08997 * 109.47021 * 180.09730 * 3 2 1 36 36 H 0.96999 * 119.99542 * 0.02562 * 4 3 2 37 37 H 1.09002 * 117.49411 * 0.02562 * 9 7 5 38 38 H 1.08993 * 117.50000 * 145.02299 * 9 7 5 39 39 H 1.07997 * 125.99038 * 0.02689 * 13 12 10 40 40 H 1.07995 * 125.64807 * 179.77293 * 15 14 13 41 41 H 1.09005 * 109.68416 * 52.07216 * 18 2 1 42 42 H 1.08997 * 109.68531 * 172.62756 * 18 2 1 43 43 H 0.96998 * 119.99897 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.67961 * 290.80856 * 28 19 18 45 45 H 1.09002 * 109.70949 * 170.27398 * 28 19 18 46 46 H 1.08994 * 109.51114 * 187.76973 * 29 28 19 47 47 H 1.09009 * 109.51415 * 67.62202 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 7 1.5552 2.1325 1.1974 5 6 1.8825 3.4223 1.4111 6 8 2.5789 4.0117 0.6121 7 6 1.3831 4.1321 2.6431 8 1 1.2988 3.5166 3.5387 9 6 0.3475 5.2415 2.4483 10 6 1.7874 5.5962 2.8275 11 1 2.4150 6.0457 2.0580 12 6 2.0388 6.0768 4.2336 13 6 1.3843 5.6871 5.3442 14 7 1.9097 6.3456 6.3880 15 6 2.8590 7.1349 5.9652 16 7 2.9721 6.9978 4.6266 17 1 3.5976 7.4650 4.0509 18 6 2.0431 -0.7250 -1.2493 19 7 1.6981 -2.1508 -1.1331 20 6 1.0646 -2.8082 -2.1538 21 1 0.4522 -3.6721 -1.9417 22 6 1.2097 -2.3642 -3.4610 23 7 2.1914 -1.5447 -3.7725 24 14 0.0117 -2.9299 -4.7779 25 1 -0.9935 -3.8412 -4.1742 26 1 -0.6770 -1.7502 -5.3602 27 1 0.7528 -3.6476 -5.8460 28 6 2.0543 -2.8493 0.1121 29 6 1.5406 -2.0207 1.2951 30 8 2.0075 -0.6758 1.1659 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.6766 1.9568 -0.8890 35 1 3.1310 1.4414 -0.0017 36 1 0.9985 1.6609 1.8367 37 1 0.0271 5.4575 1.4291 38 1 -0.4178 5.3560 3.2159 39 1 0.5794 4.9683 5.3872 40 1 3.4557 7.7891 6.5835 41 1 1.5716 -0.3044 -2.1376 42 1 3.1251 -0.6137 -1.3200 43 1 2.2930 -1.2348 -4.6860 44 1 3.1374 -2.9519 0.1785 45 1 1.5905 -3.8357 0.1259 46 1 1.9122 -2.4472 2.2268 47 1 0.4506 -2.0289 1.2994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108004958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:03 Heat of formation + Delta-G solvation = 30.769615 kcal Electronic energy + Delta-G solvation = -28834.361351 eV Core-core repulsion = 24826.960550 eV Total energy + Delta-G solvation = -4007.400801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.38044 -40.04077 -38.98429 -36.78516 -34.91604 -34.34658 -32.79871 -31.78493 -31.28368 -29.57133 -27.98495 -26.82110 -25.92750 -23.89789 -23.47582 -23.24164 -21.91471 -21.23113 -20.72864 -20.01723 -18.70205 -18.39581 -17.36628 -16.95689 -15.97595 -15.62403 -15.27225 -15.19334 -15.09571 -14.71662 -14.43932 -14.29063 -14.11215 -13.94756 -13.78383 -13.54790 -13.12190 -12.82959 -12.75137 -12.48152 -12.27898 -11.95103 -11.61395 -11.32925 -11.21632 -11.05093 -10.89219 -10.86030 -10.69015 -10.34290 -10.30590 -10.28374 -10.26067 -10.04584 -9.84505 -9.55988 -9.08260 -8.86390 -8.57214 -8.55499 -6.77406 -5.87782 -3.31090 1.60053 2.51260 2.71794 2.83948 3.25215 3.31496 3.39417 3.40982 3.73422 4.19309 4.27215 4.40769 4.42946 4.49298 4.60469 4.81231 4.95379 5.05224 5.11712 5.21917 5.30870 5.39076 5.44464 5.48919 5.59230 5.65649 5.68862 5.89552 5.91291 5.98409 5.99527 6.06528 6.11349 6.28229 6.39265 6.42812 6.54288 6.65218 6.73062 6.79742 7.03247 7.03919 7.43063 7.63850 7.68318 7.73878 7.84913 8.29333 8.31415 9.07615 9.70714 10.27769 11.20240 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024007 B = 0.002256 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.041920 B =12408.387515 C =12920.130418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 C 0.140 3.860 4 N -0.710 5.710 5 C 0.539 3.461 6 O -0.547 6.547 7 C -0.170 4.170 8 H 0.129 0.871 9 C -0.132 4.132 10 C -0.058 4.058 11 H 0.125 0.875 12 C 0.014 3.986 13 C -0.024 4.024 14 N -0.493 5.493 15 C 0.182 3.818 16 N -0.564 5.564 17 H 0.421 0.579 18 C 0.159 3.841 19 N -0.591 5.591 20 C -0.253 4.253 21 H 0.069 0.931 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.903 3.097 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.290 1.290 28 C 0.109 3.891 29 C 0.046 3.954 30 O -0.384 6.384 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.404 0.596 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.169 0.831 40 H 0.209 0.791 41 H 0.097 0.903 42 H 0.029 0.971 43 H 0.255 0.745 44 H 0.025 0.975 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 14.615 15.656 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.016 3.984 4 N -0.360 5.360 5 C 0.324 3.676 6 O -0.425 6.425 7 C -0.192 4.192 8 H 0.147 0.853 9 C -0.170 4.170 10 C -0.078 4.078 11 H 0.143 0.857 12 C -0.102 4.102 13 C -0.172 4.172 14 N -0.212 5.212 15 C -0.101 4.101 16 N -0.167 5.167 17 H 0.259 0.741 18 C 0.033 3.967 19 N -0.314 5.314 20 C -0.383 4.383 21 H 0.087 0.913 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.732 3.268 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.217 1.217 28 C -0.018 4.018 29 C -0.032 4.032 30 O -0.304 6.304 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.239 0.761 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.186 0.814 40 H 0.225 0.775 41 H 0.115 0.885 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.862 15.025 15.878 21.939 hybrid contribution -0.241 -0.457 -1.689 1.767 sum -2.103 14.568 14.188 20.444 Atomic orbital electron populations 1.22204 0.95695 1.03264 1.00759 1.22549 0.93598 0.90595 0.89543 1.21383 0.99906 0.89986 0.87138 1.45886 1.52994 1.11333 1.25776 1.19508 0.80122 0.81936 0.86022 1.90697 1.38337 1.66408 1.47094 1.22409 1.05932 0.91541 0.99328 0.85329 1.23161 0.91229 0.98567 1.04002 1.20137 0.99887 0.95899 0.91889 0.85690 1.20335 0.96183 0.98002 0.95695 1.22048 1.03462 1.04144 0.87516 1.70294 1.09980 1.09494 1.31407 1.24980 1.00620 1.02900 0.81618 1.43199 1.29935 1.33834 1.09746 0.74117 1.21294 0.97813 0.83963 0.93662 1.44009 1.68681 1.04933 1.13805 1.19201 1.21599 1.12096 0.85355 0.91348 1.25045 0.97321 1.00118 0.97117 1.70025 1.29223 1.36853 1.18464 0.86222 0.80724 0.78034 0.81789 1.20238 1.21463 1.21651 1.21600 0.97555 0.95244 0.87362 1.23036 0.98324 0.83079 0.98728 1.87814 1.72981 1.25837 1.43743 0.91907 0.90801 0.93850 0.90049 0.90862 0.76101 0.87344 0.87123 0.81399 0.77480 0.88530 0.95283 0.93476 0.95668 0.92029 0.90166 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 7.92 37.16 0.29 -2.37 16 2 C 0.08 1.41 0.76 -90.47 -0.07 1.34 16 3 C 0.14 2.32 4.82 -4.03 -0.02 2.30 16 4 N -0.71 -9.70 5.15 -60.29 -0.31 -10.01 16 5 C 0.54 7.39 7.61 -10.99 -0.08 7.30 16 6 O -0.55 -9.51 16.26 5.56 0.09 -9.42 16 7 C -0.17 -1.66 5.71 -91.77 -0.52 -2.19 16 8 H 0.13 1.07 7.98 -51.93 -0.41 0.66 16 9 C -0.13 -1.05 9.76 -26.69 -0.26 -1.31 16 10 C -0.06 -0.53 5.85 -91.73 -0.54 -1.07 16 11 H 0.13 1.26 7.67 -51.93 -0.40 0.86 16 12 C 0.01 0.13 6.92 -81.60 -0.56 -0.44 16 13 C -0.02 -0.24 10.94 -17.81 -0.19 -0.43 16 14 N -0.49 -5.44 11.25 -14.67 -0.17 -5.61 16 15 C 0.18 1.42 13.04 -90.38 -1.18 0.24 16 16 N -0.56 -4.08 6.15 -10.30 -0.06 -4.14 16 17 H 0.42 1.82 8.96 -40.82 -0.37 1.46 16 18 C 0.16 3.65 4.11 -3.54 -0.01 3.63 16 19 N -0.59 -14.15 2.57 -171.83 -0.44 -14.59 16 20 C -0.25 -6.64 9.65 -15.06 -0.15 -6.79 16 21 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 22 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 23 N -0.90 -25.40 11.14 55.49 0.62 -24.78 16 24 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.11 2.20 6.73 -3.53 -0.02 2.17 16 29 C 0.05 0.78 6.60 37.31 0.25 1.02 16 30 O -0.38 -6.89 9.97 -35.23 -0.35 -7.24 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.34 6.12 -51.93 -0.32 1.02 16 33 H 0.04 0.59 6.87 -51.93 -0.36 0.23 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.40 4.81 7.20 -40.82 -0.29 4.51 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.11 0.69 7.94 -51.93 -0.41 0.27 16 39 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.10 2.44 6.14 -51.93 -0.32 2.12 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.05 0.79 6.25 -51.92 -0.32 0.46 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -33.53 381.16 -10.04 -43.57 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.97 Total: 7.07 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -3.16 Total: 3.41 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.36 Total: -59.14 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.26 Total: -16.66 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.53 -10.04 -43.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108004958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.335 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds