Wall clock time and date at job start Tue Mar 31 2020 19:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.51308 * 2 1 4 4 N 1.46508 * 109.47074 * 60.09834 * 3 2 1 5 5 C 1.34773 * 119.99799 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00492 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99547 * 180.02562 * 5 4 3 8 8 H 1.08997 * 115.55408 * 34.41616 * 7 5 4 9 9 C 1.53010 * 117.49823 * 248.74786 * 7 5 4 10 10 C 1.53001 * 117.49536 * 180.09233 * 7 5 4 11 11 H 1.08997 * 117.49924 * 359.97438 * 10 7 5 12 12 C 1.50704 * 117.49731 * 215.00160 * 10 7 5 13 13 C 1.34671 * 126.58906 * 324.68338 * 12 10 7 14 14 N 1.34132 * 108.01779 * 179.87278 * 13 12 10 15 15 C 1.30498 * 109.25615 * 0.40129 * 14 13 12 16 16 N 1.35036 * 108.69990 * 359.75348 * 15 14 13 17 17 H 0.97003 * 126.39689 * 179.97438 * 16 15 14 18 18 C 1.53287 * 109.55746 * 239.87366 * 2 1 3 19 19 N 1.47155 * 108.38454 * 292.35164 * 18 2 1 20 20 C 1.36944 * 120.98132 * 129.48462 * 19 18 2 21 21 H 1.07997 * 119.99735 * 206.21159 * 20 19 18 22 22 C 1.38809 * 119.99954 * 26.20857 * 20 19 18 23 23 N 1.31621 * 119.99975 * 16.93076 * 22 20 19 24 24 Si 1.86796 * 120.00043 * 196.92966 * 22 20 19 25 25 H 1.48510 * 109.47133 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47299 * 120.00010 * 24 22 20 27 27 H 1.48499 * 109.47377 * 240.00313 * 24 22 20 28 28 C 1.47153 * 118.03486 * 309.46492 * 19 18 2 29 29 C 1.53293 * 108.38393 * 50.53272 * 28 19 18 30 30 O 1.42959 * 109.22603 * 307.69701 * 29 28 19 31 31 H 1.08998 * 109.46963 * 60.00174 * 1 2 3 32 32 H 1.08994 * 109.47062 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47037 * 300.00279 * 1 2 3 34 34 H 1.08996 * 109.46993 * 300.10560 * 3 2 1 35 35 H 1.08997 * 109.47021 * 180.09730 * 3 2 1 36 36 H 0.96999 * 119.99542 * 0.02562 * 4 3 2 37 37 H 1.09002 * 117.49411 * 0.02562 * 9 7 5 38 38 H 1.08993 * 117.50000 * 145.02299 * 9 7 5 39 39 H 1.07997 * 125.99038 * 0.02689 * 13 12 10 40 40 H 1.07995 * 125.64807 * 179.77293 * 15 14 13 41 41 H 1.09005 * 109.68416 * 52.07216 * 18 2 1 42 42 H 1.08997 * 109.68531 * 172.62756 * 18 2 1 43 43 H 0.96998 * 119.99897 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.67961 * 290.80856 * 28 19 18 45 45 H 1.09002 * 109.70949 * 170.27398 * 28 19 18 46 46 H 1.08994 * 109.51114 * 187.76973 * 29 28 19 47 47 H 1.09009 * 109.51415 * 67.62202 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 7 1.5552 2.1325 1.1974 5 6 1.8825 3.4223 1.4111 6 8 2.5789 4.0117 0.6121 7 6 1.3831 4.1321 2.6431 8 1 1.2988 3.5166 3.5387 9 6 0.3475 5.2415 2.4483 10 6 1.7874 5.5962 2.8275 11 1 2.4150 6.0457 2.0580 12 6 2.0388 6.0768 4.2336 13 6 1.3843 5.6871 5.3442 14 7 1.9097 6.3456 6.3880 15 6 2.8590 7.1349 5.9652 16 7 2.9721 6.9978 4.6266 17 1 3.5976 7.4650 4.0509 18 6 2.0431 -0.7250 -1.2493 19 7 1.6981 -2.1508 -1.1331 20 6 1.0646 -2.8082 -2.1538 21 1 0.4522 -3.6721 -1.9417 22 6 1.2097 -2.3642 -3.4610 23 7 2.1914 -1.5447 -3.7725 24 14 0.0117 -2.9299 -4.7779 25 1 -0.9935 -3.8412 -4.1742 26 1 -0.6770 -1.7502 -5.3602 27 1 0.7528 -3.6476 -5.8460 28 6 2.0543 -2.8493 0.1121 29 6 1.5406 -2.0207 1.2951 30 8 2.0075 -0.6758 1.1659 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.6766 1.9568 -0.8890 35 1 3.1310 1.4414 -0.0017 36 1 0.9985 1.6609 1.8367 37 1 0.0271 5.4575 1.4291 38 1 -0.4178 5.3560 3.2159 39 1 0.5794 4.9683 5.3872 40 1 3.4557 7.7891 6.5835 41 1 1.5716 -0.3044 -2.1376 42 1 3.1251 -0.6137 -1.3200 43 1 2.2930 -1.2348 -4.6860 44 1 3.1374 -2.9519 0.1785 45 1 1.5905 -3.8357 0.1259 46 1 1.9122 -2.4472 2.2268 47 1 0.4506 -2.0289 1.2994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108004958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:02 Heat of formation + Delta-G solvation = 8.352207 kcal Electronic energy + Delta-G solvation = -28835.333443 eV Core-core repulsion = 24826.960550 eV Total energy + Delta-G solvation = -4008.372893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.00333 -41.23520 -40.37671 -37.66848 -36.49120 -35.88639 -33.43470 -33.25840 -33.12376 -30.25314 -29.57626 -28.17059 -27.63296 -25.07399 -24.81594 -24.20715 -22.78581 -22.52867 -21.52832 -20.99584 -20.22647 -19.07886 -18.94098 -18.20854 -17.44635 -16.88413 -16.82030 -16.18968 -16.11500 -15.87237 -15.62001 -15.56595 -15.36909 -15.15177 -15.03758 -14.67563 -14.44783 -14.39423 -13.97285 -13.57159 -13.45450 -13.16957 -12.92794 -12.90624 -12.80856 -12.53004 -12.43188 -12.11845 -12.01459 -11.95096 -11.83195 -11.66798 -11.16965 -10.98506 -10.95477 -10.92028 -10.74567 -10.50048 -10.11527 -9.21103 -8.72068 -7.89989 -5.36682 0.96203 1.45023 1.47609 1.51325 1.57488 2.00375 2.18145 2.32141 2.48482 2.79478 2.98203 3.24701 3.49792 3.57435 3.69427 3.83200 3.93492 3.96181 4.02485 4.11791 4.12658 4.17249 4.42906 4.47117 4.48270 4.57640 4.61515 4.64382 4.72050 4.78694 4.81380 4.91736 4.98615 5.05462 5.07119 5.12965 5.21483 5.33148 5.37382 5.39217 5.53717 5.61900 5.76236 6.29315 6.37533 6.54402 6.55889 7.06830 7.12419 7.22757 7.76081 8.29990 9.15819 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024007 B = 0.002256 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.041920 B =12408.387515 C =12920.130418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 C 0.150 3.850 4 N -0.699 5.699 5 C 0.537 3.463 6 O -0.589 6.589 7 C -0.172 4.172 8 H 0.149 0.851 9 C -0.112 4.112 10 C -0.058 4.058 11 H 0.112 0.888 12 C 0.005 3.995 13 C -0.038 4.038 14 N -0.536 5.536 15 C 0.190 3.810 16 N -0.559 5.559 17 H 0.433 0.567 18 C 0.166 3.834 19 N -0.607 5.607 20 C -0.257 4.257 21 H 0.074 0.926 22 C -0.051 4.051 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.263 1.263 26 H -0.290 1.290 27 H -0.296 1.296 28 C 0.101 3.899 29 C 0.053 3.947 30 O -0.385 6.385 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.416 0.584 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.180 0.820 40 H 0.244 0.756 41 H 0.067 0.933 42 H -0.009 1.009 43 H 0.250 0.750 44 H 0.011 0.989 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 15.098 18.060 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.025 3.975 4 N -0.351 5.351 5 C 0.325 3.675 6 O -0.470 6.470 7 C -0.193 4.193 8 H 0.167 0.833 9 C -0.149 4.149 10 C -0.078 4.078 11 H 0.130 0.870 12 C -0.111 4.111 13 C -0.185 4.185 14 N -0.256 5.256 15 C -0.093 4.093 16 N -0.163 5.163 17 H 0.274 0.726 18 C 0.040 3.960 19 N -0.331 5.331 20 C -0.387 4.387 21 H 0.092 0.908 22 C -0.246 4.246 23 N -0.583 5.583 24 Si 0.795 3.205 25 H -0.187 1.187 26 H -0.217 1.217 27 H -0.223 1.223 28 C -0.024 4.024 29 C -0.024 4.024 30 O -0.305 6.305 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.254 0.746 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.197 0.803 40 H 0.260 0.740 41 H 0.086 0.914 42 H 0.009 0.991 43 H 0.059 0.941 44 H 0.029 0.971 45 H 0.090 0.910 46 H 0.135 0.865 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.602 15.491 18.324 24.263 hybrid contribution 0.397 -0.627 -2.395 2.507 sum -3.204 14.865 15.929 22.022 Atomic orbital electron populations 1.22109 0.93775 1.02870 1.02249 1.22183 0.94758 0.90477 0.87265 1.21024 0.98570 0.89580 0.88359 1.45718 1.52977 1.11470 1.24898 1.20185 0.79119 0.81535 0.86676 1.90682 1.40193 1.67218 1.48899 1.22342 1.07334 0.91836 0.97822 0.83288 1.23274 0.91010 0.96027 1.04628 1.20058 1.00797 0.95198 0.91784 0.86970 1.20298 0.96821 0.98705 0.95301 1.22323 1.04036 1.04567 0.87577 1.70288 1.11716 1.11140 1.32426 1.25704 0.99682 1.02010 0.81940 1.43241 1.29713 1.33410 1.09956 0.72646 1.21069 0.95320 0.84416 0.95229 1.44264 1.68675 1.05544 1.14618 1.19542 1.21133 1.11923 0.86059 0.90830 1.25796 0.98851 1.00804 0.99198 1.70192 1.31103 1.38582 1.18436 0.85222 0.78819 0.77505 0.79000 1.18716 1.21660 1.22320 1.21825 0.96966 0.96406 0.87232 1.23104 0.99171 0.81749 0.98397 1.87825 1.73334 1.26450 1.42861 0.92617 0.92044 0.90140 0.90920 0.93045 0.74634 0.87598 0.84682 0.80317 0.73982 0.91445 0.99135 0.94087 0.97119 0.90966 0.86506 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 7.92 71.98 0.57 -4.21 16 2 C 0.09 3.38 0.76 -10.70 -0.01 3.37 16 3 C 0.15 5.06 4.82 86.38 0.42 5.48 16 4 N -0.70 -18.27 5.15 -463.05 -2.39 -20.65 16 5 C 0.54 14.27 7.61 87.66 0.67 14.94 16 6 O -0.59 -20.72 16.26 -3.02 -0.05 -20.77 16 7 C -0.17 -3.01 5.71 -11.54 -0.07 -3.07 16 8 H 0.15 2.02 7.98 -2.39 -0.02 2.00 16 9 C -0.11 -1.50 9.76 30.62 0.30 -1.20 16 10 C -0.06 -0.98 5.85 -11.51 -0.07 -1.05 16 11 H 0.11 2.20 7.67 -2.39 -0.02 2.19 16 12 C 0.01 0.08 6.92 40.95 0.28 0.37 16 13 C -0.04 -0.69 10.94 83.52 0.91 0.23 16 14 N -0.54 -10.91 11.25 -200.32 -2.25 -13.16 16 15 C 0.19 2.55 13.04 180.26 2.35 4.90 16 16 N -0.56 -7.04 6.15 -186.50 -1.15 -8.18 16 17 H 0.43 3.01 8.96 -92.71 -0.83 2.18 16 18 C 0.17 7.93 4.11 86.35 0.36 8.28 16 19 N -0.61 -29.48 2.57 -697.55 -1.79 -31.27 16 20 C -0.26 -13.57 9.65 84.03 0.81 -12.76 16 21 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 22 C -0.05 -2.79 4.94 84.86 0.42 -2.37 16 23 N -0.94 -54.93 11.14 21.65 0.24 -54.68 16 24 Si 0.97 43.82 29.59 68.60 2.03 45.85 16 25 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 28 C 0.10 4.01 6.73 86.35 0.58 4.59 16 29 C 0.05 1.65 6.60 72.08 0.48 2.12 16 30 O -0.39 -13.17 9.97 -148.98 -1.49 -14.66 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 2.10 6.12 -2.39 -0.01 2.09 16 33 H 0.08 1.91 6.87 -2.39 -0.02 1.90 16 34 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.42 8.76 7.20 -92.71 -0.67 8.09 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.14 1.20 7.94 -2.39 -0.02 1.18 16 39 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.24 1.06 8.06 -2.91 -0.02 1.03 16 41 H 0.07 3.59 6.14 -2.38 -0.01 3.58 16 42 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 46 H 0.12 2.83 8.14 -2.39 -0.02 2.82 16 47 H 0.06 1.81 6.25 -2.38 -0.01 1.80 16 Total: -1.00 -75.43 381.16 0.67 -74.76 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.49 Total: 23.15 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 8.00 Total: 19.61 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -7.34 Total: -127.95 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.53 Total: -35.43 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -75.43 0.67 -74.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108004958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.116 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds