Wall clock time and date at job start Tue Mar 31 2020 19:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.51559 * 2 1 4 4 N 1.46501 * 109.46878 * 60.00331 * 3 2 1 5 5 C 1.34776 * 120.00339 * 180.27849 * 4 3 2 6 6 O 1.21575 * 119.99488 * 359.72636 * 5 4 3 7 7 C 1.47705 * 120.00251 * 179.72224 * 5 4 3 8 8 N 1.31841 * 126.57405 * 359.68586 * 7 5 4 9 9 N 1.28457 * 110.05911 * 179.85526 * 8 7 5 10 10 H 0.97007 * 124.88412 * 180.15900 * 9 8 7 11 11 C 1.35257 * 110.23282 * 0.40611 * 9 8 7 12 12 C 1.35048 * 107.07577 * 359.77207 * 11 9 8 13 13 C 1.50941 * 110.52431 * 179.97438 * 12 11 9 14 14 C 1.54501 * 104.97543 * 343.24181 * 13 12 11 15 15 C 1.51229 * 142.76955 * 179.80821 * 11 9 8 16 16 C 1.53300 * 109.51095 * 239.90161 * 2 1 3 17 17 N 1.47155 * 108.38410 * 292.32623 * 16 2 1 18 18 C 1.36934 * 120.97977 * 129.44378 * 17 16 2 19 19 H 1.07999 * 119.99715 * 206.23689 * 18 17 16 20 20 C 1.38810 * 120.00034 * 26.23925 * 18 17 16 21 21 N 1.31619 * 120.00343 * 16.91456 * 20 18 17 22 22 Si 1.86803 * 119.99707 * 196.91154 * 20 18 17 23 23 H 1.48499 * 109.47029 * 60.00221 * 22 20 18 24 24 H 1.48496 * 109.47056 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47088 * 299.99857 * 22 20 18 26 26 C 1.47156 * 118.03246 * 309.46476 * 17 16 2 27 27 C 1.53286 * 108.38468 * 50.53706 * 26 17 16 28 28 O 1.42957 * 109.51733 * 120.10478 * 2 1 3 29 29 H 1.09000 * 109.47117 * 59.99680 * 1 2 3 30 30 H 1.09001 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46976 * 299.99564 * 1 2 3 32 32 H 1.09004 * 109.47282 * 300.00605 * 3 2 1 33 33 H 1.08996 * 109.47640 * 180.02562 * 3 2 1 34 34 H 0.97002 * 120.00171 * 359.97438 * 4 3 2 35 35 H 1.09003 * 110.34289 * 102.10387 * 13 12 11 36 36 H 1.09002 * 110.33615 * 224.35050 * 13 12 11 37 37 H 1.08994 * 110.92214 * 267.30674 * 14 13 12 38 38 H 1.08995 * 110.96994 * 143.65457 * 14 13 12 39 39 H 1.09004 * 110.32844 * 315.68966 * 15 11 9 40 40 H 1.08998 * 110.32623 * 77.80397 * 15 11 9 41 41 H 1.08992 * 109.68279 * 52.04865 * 16 2 1 42 42 H 1.09006 * 109.67889 * 172.56567 * 16 2 1 43 43 H 0.96997 * 120.00230 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.67529 * 170.26035 * 26 17 16 45 45 H 1.09002 * 109.68137 * 290.80620 * 26 17 16 46 46 H 1.08997 * 109.51848 * 67.61945 * 27 26 17 47 47 H 1.09003 * 109.51340 * 187.72106 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5533 2.1330 1.1962 5 6 1.8752 3.4247 1.4068 6 8 2.5745 4.0151 0.6065 7 6 1.3784 4.1231 2.6098 8 7 0.6117 3.6134 3.5536 9 7 0.3732 4.4987 4.4533 10 1 -0.1667 4.3527 5.2459 11 6 0.9786 5.6653 4.1338 12 6 1.6287 5.4681 2.9667 13 6 2.3358 6.7298 2.5350 14 6 1.6877 7.8564 3.3703 15 6 1.1830 7.0858 4.6106 16 6 2.0420 -0.7246 -1.2501 17 7 1.6970 -2.1504 -1.1341 18 6 1.0618 -2.8072 -2.1541 19 1 0.4493 -3.6709 -1.9414 20 6 1.2054 -2.3630 -3.4613 21 7 2.1868 -1.5436 -3.7740 22 14 0.0055 -2.9281 -4.7768 23 1 -1.3700 -2.5100 -4.4048 24 1 0.3743 -2.3165 -6.0787 25 1 0.0589 -4.4077 -4.8928 26 6 2.0542 -2.8494 0.1106 27 6 1.5417 -2.0213 1.2943 28 8 2.0076 -0.6758 1.1657 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6781 1.9563 -0.8899 33 1 3.1310 1.4414 -0.0005 34 1 0.9950 1.6621 1.8346 35 1 3.4013 6.6610 2.7542 36 1 2.1778 6.9076 1.4713 37 1 0.8577 8.3126 2.8309 38 1 2.4259 8.6071 3.6522 39 1 0.2405 7.5072 4.9603 40 1 1.9281 7.1149 5.4055 41 1 1.5697 -0.3038 -2.1377 42 1 3.1239 -0.6128 -1.3220 43 1 2.2873 -1.2335 -4.6875 44 1 1.5900 -3.8355 0.1240 45 1 3.1374 -2.9521 0.1760 46 1 0.4517 -2.0293 1.2996 47 1 1.9134 -2.4485 2.2257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108047419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:38 Heat of formation + Delta-G solvation = 29.306041 kcal Electronic energy + Delta-G solvation = -29338.957835 eV Core-core repulsion = 25331.493568 eV Total energy + Delta-G solvation = -4007.464267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.04667 -39.53010 -38.52238 -37.07474 -34.84337 -34.26517 -32.33739 -31.38025 -31.20218 -28.98901 -27.95435 -27.85786 -26.53487 -25.73734 -23.54726 -23.17117 -21.94495 -21.11849 -20.15363 -19.91431 -18.62005 -17.81136 -17.17204 -16.77759 -16.46790 -15.82804 -15.30581 -15.14146 -14.95347 -14.38564 -14.35535 -13.96865 -13.82783 -13.63671 -13.45401 -13.17556 -13.06729 -12.93506 -12.71535 -12.40999 -12.06274 -11.83798 -11.53000 -11.47424 -11.45690 -11.15279 -10.98629 -10.91793 -10.77199 -10.64971 -10.28140 -10.23666 -10.04743 -9.86281 -9.49491 -9.48933 -9.00008 -8.83025 -8.70143 -8.50774 -6.71211 -5.81920 -3.25183 1.49249 1.92186 2.43615 3.34362 3.38116 3.42976 3.43364 3.53113 4.00335 4.30189 4.30689 4.45953 4.47542 4.66121 4.86472 5.04135 5.20035 5.21379 5.36764 5.38914 5.47149 5.54367 5.56733 5.60328 5.72421 5.75199 5.90382 5.94123 5.97204 5.99287 6.07724 6.15440 6.19116 6.24593 6.36375 6.52541 6.62991 6.73099 6.78825 6.82305 6.87013 7.11171 7.50322 7.56868 7.72776 7.87645 7.93707 8.35662 8.43075 9.13389 9.76538 10.33994 11.26066 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.002570 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.332176 B =10892.652250 C =11482.312972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 C 0.139 3.861 4 N -0.703 5.703 5 C 0.596 3.404 6 O -0.534 6.534 7 C 0.015 3.985 8 N -0.250 5.250 9 N -0.365 5.365 10 H 0.443 0.557 11 C -0.027 4.027 12 C -0.160 4.160 13 C -0.048 4.048 14 C -0.116 4.116 15 C -0.035 4.035 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.067 0.933 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.383 6.383 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.408 0.592 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.030 0.970 43 H 0.256 0.744 44 H 0.061 0.939 45 H 0.026 0.974 46 H 0.048 0.952 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 16.153 18.586 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 C 0.016 3.984 4 N -0.354 5.354 5 C 0.379 3.621 6 O -0.409 6.409 7 C -0.146 4.146 8 N -0.086 5.086 9 N -0.077 5.077 10 H 0.287 0.713 11 C -0.154 4.154 12 C -0.170 4.170 13 C -0.086 4.086 14 C -0.154 4.154 15 C -0.074 4.074 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.017 4.017 27 C -0.032 4.032 28 O -0.303 6.303 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.244 0.756 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.066 0.934 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.790 15.679 18.191 24.312 hybrid contribution -0.986 -0.318 -0.300 1.079 sum -4.777 15.360 17.891 24.059 Atomic orbital electron populations 1.22209 0.95765 1.03184 1.00825 1.22548 0.93592 0.90595 0.89513 1.21415 1.00015 0.89952 0.87065 1.45848 1.52769 1.10909 1.25884 1.16902 0.80204 0.81573 0.83379 1.90790 1.38091 1.66596 1.45457 1.21462 1.02830 0.93193 0.97101 1.73750 1.17512 1.17587 0.99719 1.42592 1.38992 1.06173 1.19990 0.71317 1.22182 1.01624 0.92397 0.99155 1.20870 1.03990 0.94932 0.97180 1.20408 0.98838 0.88489 1.00887 1.22440 1.00830 0.97240 0.94859 1.20622 1.01974 0.85905 0.98909 1.21294 0.97848 0.83896 0.93619 1.43986 1.68605 1.04953 1.13866 1.19109 1.21681 1.12181 0.85402 0.91498 1.25033 0.97285 1.00125 0.97071 1.70002 1.29177 1.36749 1.18609 0.86362 0.81021 0.78302 0.81043 1.20999 1.21541 1.20887 1.21596 0.97539 0.95191 0.87373 1.23026 0.98319 0.83162 0.98675 1.87823 1.72952 1.25714 1.43772 0.91898 0.90846 0.93831 0.89858 0.90617 0.75617 0.90134 0.90041 0.90488 0.89766 0.90495 0.89607 0.88520 0.95206 0.93364 0.92084 0.95651 0.93416 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 7.92 37.16 0.29 -2.64 16 2 C 0.08 1.52 0.76 -90.47 -0.07 1.46 16 3 C 0.14 2.54 4.82 -4.04 -0.02 2.52 16 4 N -0.70 -11.65 5.15 -61.29 -0.32 -11.96 16 5 C 0.60 10.26 7.82 -12.39 -0.10 10.16 16 6 O -0.53 -10.57 16.93 5.30 0.09 -10.48 16 7 C 0.01 0.22 7.13 -82.80 -0.59 -0.37 16 8 N -0.25 -3.23 11.93 33.40 0.40 -2.83 16 9 N -0.37 -3.40 6.84 33.61 0.23 -3.17 16 10 H 0.44 2.34 8.96 -190.44 -1.71 0.63 16 11 C -0.03 -0.25 8.12 -81.96 -0.67 -0.92 16 12 C -0.16 -2.00 6.82 -104.44 -0.71 -2.71 16 13 C -0.05 -0.47 6.78 -26.98 -0.18 -0.66 16 14 C -0.12 -0.70 7.13 -25.16 -0.18 -0.88 16 15 C -0.04 -0.20 6.78 -26.84 -0.18 -0.38 16 16 C 0.16 3.80 4.11 -3.53 -0.01 3.78 16 17 N -0.59 -14.59 2.57 -171.83 -0.44 -15.03 16 18 C -0.25 -6.83 9.65 -15.06 -0.15 -6.98 16 19 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 21 N -0.90 -25.86 11.14 55.49 0.62 -25.25 16 22 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.11 2.29 6.74 -3.54 -0.02 2.27 16 27 C 0.05 0.83 6.60 37.31 0.25 1.07 16 28 O -0.38 -7.39 9.98 -35.23 -0.35 -7.74 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.43 6.12 -51.93 -0.32 1.11 16 31 H 0.04 0.69 6.86 -51.93 -0.36 0.33 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.41 6.38 6.93 -40.82 -0.28 6.10 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 2.52 6.13 -51.93 -0.32 2.20 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.83 6.25 -51.93 -0.32 0.51 16 47 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -33.26 374.68 -9.93 -43.19 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.34 Total: 5.46 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -2.43 Total: 5.74 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.49 Total: -58.23 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.26 Total: -18.22 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.26 -9.93 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108047419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.494 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds