Wall clock time and date at job start Tue Mar 31 2020 19:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.51559 * 2 1 4 4 N 1.46501 * 109.46878 * 60.00331 * 3 2 1 5 5 C 1.34776 * 120.00339 * 180.27849 * 4 3 2 6 6 O 1.21575 * 119.99488 * 359.72636 * 5 4 3 7 7 C 1.47705 * 120.00251 * 179.72224 * 5 4 3 8 8 N 1.31841 * 126.57405 * 359.68586 * 7 5 4 9 9 N 1.28457 * 110.05911 * 179.85526 * 8 7 5 10 10 H 0.97007 * 124.88412 * 180.15900 * 9 8 7 11 11 C 1.35257 * 110.23282 * 0.40611 * 9 8 7 12 12 C 1.35048 * 107.07577 * 359.77207 * 11 9 8 13 13 C 1.50941 * 110.52431 * 179.97438 * 12 11 9 14 14 C 1.54501 * 104.97543 * 343.24181 * 13 12 11 15 15 C 1.51229 * 142.76955 * 179.80821 * 11 9 8 16 16 C 1.53300 * 109.51095 * 239.90161 * 2 1 3 17 17 N 1.47155 * 108.38410 * 292.32623 * 16 2 1 18 18 C 1.36934 * 120.97977 * 129.44378 * 17 16 2 19 19 H 1.07999 * 119.99715 * 206.23689 * 18 17 16 20 20 C 1.38810 * 120.00034 * 26.23925 * 18 17 16 21 21 N 1.31619 * 120.00343 * 16.91456 * 20 18 17 22 22 Si 1.86803 * 119.99707 * 196.91154 * 20 18 17 23 23 H 1.48499 * 109.47029 * 60.00221 * 22 20 18 24 24 H 1.48496 * 109.47056 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47088 * 299.99857 * 22 20 18 26 26 C 1.47156 * 118.03246 * 309.46476 * 17 16 2 27 27 C 1.53286 * 108.38468 * 50.53706 * 26 17 16 28 28 O 1.42957 * 109.51733 * 120.10478 * 2 1 3 29 29 H 1.09000 * 109.47117 * 59.99680 * 1 2 3 30 30 H 1.09001 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46976 * 299.99564 * 1 2 3 32 32 H 1.09004 * 109.47282 * 300.00605 * 3 2 1 33 33 H 1.08996 * 109.47640 * 180.02562 * 3 2 1 34 34 H 0.97002 * 120.00171 * 359.97438 * 4 3 2 35 35 H 1.09003 * 110.34289 * 102.10387 * 13 12 11 36 36 H 1.09002 * 110.33615 * 224.35050 * 13 12 11 37 37 H 1.08994 * 110.92214 * 267.30674 * 14 13 12 38 38 H 1.08995 * 110.96994 * 143.65457 * 14 13 12 39 39 H 1.09004 * 110.32844 * 315.68966 * 15 11 9 40 40 H 1.08998 * 110.32623 * 77.80397 * 15 11 9 41 41 H 1.08992 * 109.68279 * 52.04865 * 16 2 1 42 42 H 1.09006 * 109.67889 * 172.56567 * 16 2 1 43 43 H 0.96997 * 120.00230 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.67529 * 170.26035 * 26 17 16 45 45 H 1.09002 * 109.68137 * 290.80620 * 26 17 16 46 46 H 1.08997 * 109.51848 * 67.61945 * 27 26 17 47 47 H 1.09003 * 109.51340 * 187.72106 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5533 2.1330 1.1962 5 6 1.8752 3.4247 1.4068 6 8 2.5745 4.0151 0.6065 7 6 1.3784 4.1231 2.6098 8 7 0.6117 3.6134 3.5536 9 7 0.3732 4.4987 4.4533 10 1 -0.1667 4.3527 5.2459 11 6 0.9786 5.6653 4.1338 12 6 1.6287 5.4681 2.9667 13 6 2.3358 6.7298 2.5350 14 6 1.6877 7.8564 3.3703 15 6 1.1830 7.0858 4.6106 16 6 2.0420 -0.7246 -1.2501 17 7 1.6970 -2.1504 -1.1341 18 6 1.0618 -2.8072 -2.1541 19 1 0.4493 -3.6709 -1.9414 20 6 1.2054 -2.3630 -3.4613 21 7 2.1868 -1.5436 -3.7740 22 14 0.0055 -2.9281 -4.7768 23 1 -1.3700 -2.5100 -4.4048 24 1 0.3743 -2.3165 -6.0787 25 1 0.0589 -4.4077 -4.8928 26 6 2.0542 -2.8494 0.1106 27 6 1.5417 -2.0213 1.2943 28 8 2.0076 -0.6758 1.1657 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6781 1.9563 -0.8899 33 1 3.1310 1.4414 -0.0005 34 1 0.9950 1.6621 1.8346 35 1 3.4013 6.6610 2.7542 36 1 2.1778 6.9076 1.4713 37 1 0.8577 8.3126 2.8309 38 1 2.4259 8.6071 3.6522 39 1 0.2405 7.5072 4.9603 40 1 1.9281 7.1149 5.4055 41 1 1.5697 -0.3038 -2.1377 42 1 3.1239 -0.6128 -1.3220 43 1 2.2873 -1.2335 -4.6875 44 1 1.5900 -3.8355 0.1240 45 1 3.1374 -2.9521 0.1760 46 1 0.4517 -2.0293 1.2996 47 1 1.9134 -2.4485 2.2257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108047419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:37 Heat of formation + Delta-G solvation = 5.650964 kcal Electronic energy + Delta-G solvation = -29339.983596 eV Core-core repulsion = 25331.493568 eV Total energy + Delta-G solvation = -4008.490028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.90540 -41.05903 -40.02806 -37.72951 -36.54724 -35.93554 -33.56425 -33.21283 -32.59285 -29.73589 -29.59687 -28.62766 -28.07531 -27.45237 -25.04611 -24.71254 -22.86863 -22.49032 -21.20397 -21.00183 -20.25803 -18.95699 -18.52833 -18.16344 -17.45723 -17.26304 -16.85070 -16.71656 -16.13826 -15.98580 -15.63944 -15.46788 -15.34516 -15.19072 -14.67920 -14.52302 -14.30504 -14.00069 -13.75676 -13.62457 -13.43868 -13.19653 -12.93808 -12.83555 -12.75864 -12.53804 -12.44895 -12.18250 -12.03879 -12.01379 -11.97586 -11.85767 -11.70023 -11.38279 -11.09665 -10.75878 -10.50151 -10.48418 -10.09806 -9.61040 -8.71879 -7.89093 -5.35960 0.43989 1.06778 1.46392 1.48744 1.55599 1.69106 2.09481 2.28783 2.48764 2.77754 3.19391 3.26060 3.49518 3.58244 3.72164 3.88634 3.99311 4.09042 4.12409 4.23905 4.27323 4.40997 4.45235 4.54834 4.60254 4.69223 4.71600 4.76653 4.83000 4.86853 4.95087 5.00672 5.04055 5.09288 5.10395 5.18986 5.19682 5.29533 5.32942 5.39061 5.39991 5.52824 5.61579 6.11023 6.29308 6.36214 6.42062 6.82334 7.06933 7.10616 7.76224 8.30772 9.16699 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.002570 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.332176 B =10892.652250 C =11482.312972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.094 3.906 3 C 0.148 3.852 4 N -0.694 5.694 5 C 0.594 3.406 6 O -0.570 6.570 7 C -0.021 4.021 8 N -0.260 5.260 9 N -0.345 5.345 10 H 0.462 0.538 11 C -0.003 4.003 12 C -0.198 4.198 13 C -0.055 4.055 14 C -0.106 4.106 15 C -0.030 4.030 16 C 0.169 3.831 17 N -0.607 5.607 18 C -0.261 4.261 19 H 0.074 0.926 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.103 3.897 27 C 0.052 3.948 28 O -0.387 6.387 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.415 0.585 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.069 0.931 42 H -0.005 1.005 43 H 0.251 0.749 44 H 0.073 0.927 45 H 0.013 0.987 46 H 0.059 0.941 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 17.222 21.807 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.023 3.977 4 N -0.346 5.346 5 C 0.380 3.620 6 O -0.448 6.448 7 C -0.179 4.179 8 N -0.098 5.098 9 N -0.061 5.061 10 H 0.310 0.690 11 C -0.131 4.131 12 C -0.208 4.208 13 C -0.093 4.093 14 C -0.144 4.144 15 C -0.069 4.069 16 C 0.042 3.958 17 N -0.331 5.331 18 C -0.390 4.390 19 H 0.091 0.909 20 C -0.245 4.245 21 N -0.582 5.582 22 Si 0.795 3.205 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.201 1.201 26 C -0.023 4.023 27 C -0.025 4.025 28 O -0.306 6.306 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.087 0.913 42 H 0.013 0.987 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.031 0.969 46 H 0.078 0.922 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.805 16.716 21.475 27.826 hybrid contribution -0.325 -0.680 -1.211 1.426 sum -6.130 16.036 20.263 26.558 Atomic orbital electron populations 1.22101 0.94153 1.02838 1.01891 1.22192 0.94526 0.90380 0.87575 1.21141 0.99017 0.89659 0.87834 1.45681 1.52740 1.10887 1.25256 1.17301 0.79464 0.81354 0.83906 1.90755 1.39756 1.67311 1.47011 1.21187 1.05133 0.94446 0.97166 1.73648 1.17497 1.18568 1.00050 1.42692 1.37987 1.05718 1.19663 0.68973 1.22799 0.99116 0.93472 0.97724 1.21305 1.05673 0.94826 0.98997 1.20534 0.99000 0.89270 1.00505 1.22467 1.01333 0.96305 0.94273 1.20844 1.04119 0.82874 0.99024 1.21040 0.95521 0.84380 0.94840 1.44237 1.68641 1.05471 1.14726 1.19469 1.21363 1.12117 0.86087 0.90854 1.25803 0.98808 1.00739 0.99172 1.70175 1.31018 1.38423 1.18564 0.85343 0.79074 0.78012 0.78044 1.20165 1.22289 1.20054 1.21807 0.97073 0.96308 0.87064 1.23116 0.99066 0.81758 0.98607 1.87833 1.73298 1.26521 1.42969 0.92488 0.91766 0.91090 0.90472 0.92240 0.74819 0.90498 0.92190 0.89979 0.87273 0.87536 0.87370 0.91302 0.98722 0.94010 0.90835 0.96876 0.92246 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 7.92 71.98 0.57 -4.84 16 2 C 0.09 3.72 0.76 -10.69 -0.01 3.71 16 3 C 0.15 5.64 4.82 86.38 0.42 6.05 16 4 N -0.69 -23.41 5.15 -466.10 -2.40 -25.81 16 5 C 0.59 21.18 7.82 86.75 0.68 21.86 16 6 O -0.57 -23.88 16.93 -3.95 -0.07 -23.95 16 7 C -0.02 -0.61 7.13 42.42 0.30 -0.31 16 8 N -0.26 -6.37 11.93 -48.24 -0.58 -6.94 16 9 N -0.34 -5.50 6.84 -47.57 -0.33 -5.83 16 10 H 0.46 3.29 8.96 -219.99 -1.97 1.32 16 11 C 0.00 -0.05 8.12 41.46 0.34 0.28 16 12 C -0.20 -4.81 6.82 -19.75 -0.13 -4.95 16 13 C -0.05 -1.06 6.78 30.43 0.21 -0.85 16 14 C -0.11 -0.97 7.13 31.61 0.23 -0.74 16 15 C -0.03 -0.21 6.78 30.52 0.21 0.00 16 16 C 0.17 8.39 4.11 86.35 0.36 8.74 16 17 N -0.61 -30.49 2.57 -697.54 -1.79 -32.28 16 18 C -0.26 -14.12 9.65 84.03 0.81 -13.31 16 19 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 20 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 21 N -0.94 -55.86 11.14 21.65 0.24 -55.62 16 22 Si 0.97 44.73 29.59 68.60 2.03 46.76 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.10 4.26 6.74 86.35 0.58 4.84 16 27 C 0.05 1.75 6.60 72.08 0.48 2.22 16 28 O -0.39 -14.61 9.98 -148.98 -1.49 -16.10 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 2.41 6.12 -2.39 -0.01 2.40 16 31 H 0.07 2.12 6.86 -2.39 -0.02 2.10 16 32 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.41 12.72 6.93 -92.71 -0.64 12.08 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 40 H 0.11 0.40 8.14 -2.39 -0.02 0.39 16 41 H 0.07 3.79 6.13 -2.39 -0.01 3.78 16 42 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 43 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 44 H 0.07 2.82 7.96 -2.39 -0.02 2.80 16 45 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.06 1.91 6.25 -2.39 -0.01 1.89 16 47 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -75.90 374.68 -0.53 -76.43 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -1.60 Total: 22.99 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 5.44 Total: 20.35 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -4.85 Total: -126.48 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.55 Total: -40.05 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -75.90 -0.53 -76.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108047419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.085 kcal (2) G-P(sol) polarization free energy of solvation -75.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds