Wall clock time and date at job start Tue Mar 31 2020 19:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.55410 * 2 1 4 4 N 1.46499 * 109.47354 * 304.87420 * 3 2 1 5 5 C 1.34767 * 120.00065 * 179.97438 * 4 3 2 6 6 O 1.21579 * 119.99995 * 359.97438 * 5 4 3 7 7 C 1.47713 * 120.00322 * 179.97438 * 5 4 3 8 8 N 1.31841 * 126.56679 * 359.68787 * 7 5 4 9 9 N 1.28462 * 110.05673 * 179.81656 * 8 7 5 10 10 H 0.97001 * 124.88242 * 180.14594 * 9 8 7 11 11 C 1.35253 * 110.23146 * 0.44465 * 9 8 7 12 12 C 1.35049 * 107.07381 * 359.74604 * 11 9 8 13 13 C 1.50945 * 110.52286 * 179.97438 * 12 11 9 14 14 C 1.54517 * 104.96612 * 343.22699 * 13 12 11 15 15 C 1.51230 * 142.76992 * 179.77589 * 11 9 8 16 16 C 1.53292 * 109.51267 * 120.12825 * 2 1 3 17 17 N 1.47165 * 108.41376 * 67.64295 * 16 2 1 18 18 C 1.36935 * 120.99578 * 230.54471 * 17 16 2 19 19 H 1.07992 * 120.00186 * 153.32389 * 18 17 16 20 20 C 1.38816 * 119.99602 * 333.33361 * 18 17 16 21 21 N 1.31616 * 120.00208 * 343.52858 * 20 18 17 22 22 Si 1.86797 * 119.99898 * 163.53345 * 20 18 17 23 23 H 1.48500 * 109.47409 * 59.99733 * 22 20 18 24 24 H 1.48501 * 109.46973 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47195 * 299.99374 * 22 20 18 26 26 C 1.47151 * 118.02621 * 50.46989 * 17 16 2 27 27 C 1.53294 * 108.41779 * 309.52979 * 26 17 16 28 28 O 1.42966 * 109.22198 * 52.28429 * 27 26 17 29 29 H 1.08997 * 109.47587 * 180.12462 * 1 2 3 30 30 H 1.09005 * 109.47135 * 300.12598 * 1 2 3 31 31 H 1.09003 * 109.47554 * 60.12280 * 1 2 3 32 32 H 1.09003 * 109.46779 * 64.87711 * 3 2 1 33 33 H 1.08998 * 109.46843 * 184.87144 * 3 2 1 34 34 H 0.97002 * 119.99524 * 359.97438 * 4 3 2 35 35 H 1.09001 * 110.34097 * 102.11530 * 13 12 11 36 36 H 1.09004 * 110.34246 * 224.36558 * 13 12 11 37 37 H 1.09007 * 110.93519 * 267.32317 * 14 13 12 38 38 H 1.08997 * 110.92343 * 143.66155 * 14 13 12 39 39 H 1.08998 * 110.32590 * 315.71088 * 15 11 9 40 40 H 1.09004 * 110.32706 * 77.92387 * 15 11 9 41 41 H 1.09007 * 109.68283 * 187.34438 * 16 2 1 42 42 H 1.09002 * 109.68326 * 307.89778 * 16 2 1 43 43 H 0.96998 * 120.00577 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.68282 * 189.78626 * 26 17 16 45 45 H 1.09005 * 109.68198 * 69.27128 * 26 17 16 46 46 H 1.08997 * 109.51621 * 172.20381 * 27 26 17 47 47 H 1.08999 * 109.51217 * 292.30900 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.4613 2.1664 -1.1331 5 6 1.7717 3.4622 -1.3348 6 8 2.5333 4.0301 -0.5761 7 6 1.1867 4.1926 -2.4777 8 7 0.3562 3.7061 -3.3787 9 7 0.0444 4.6178 -4.2283 10 1 -0.5548 4.4933 -4.9808 11 6 0.6771 5.7745 -3.9264 12 6 1.4146 5.5456 -2.8184 13 6 2.1586 6.7940 -2.4107 14 6 2.1188 7.7071 -3.6567 15 6 0.8486 7.2070 -4.3798 16 6 2.0420 -0.7252 1.2497 17 7 1.6966 -2.1511 1.1339 18 6 1.0619 -2.8080 2.1541 19 1 0.4435 -3.6673 1.9409 20 6 1.2134 -2.3693 3.4624 21 7 2.1955 -1.5497 3.7721 22 14 0.0232 -2.9422 4.7832 23 1 0.0797 -4.4221 4.8923 24 1 0.3996 -2.3356 6.0854 25 1 -1.3554 -2.5247 4.4222 26 6 2.0521 -2.8497 -0.1115 27 6 1.5396 -2.0210 -1.2949 28 8 2.0075 -0.6763 -1.1656 29 1 -0.3634 -1.0276 0.0022 30 1 -0.3634 0.5158 0.8889 31 1 -0.3634 0.5119 -0.8911 32 1 1.7525 1.9302 0.9305 33 1 3.1285 1.4414 -0.0873 34 1 0.8534 1.7133 -1.7382 35 1 1.6581 7.2763 -1.5711 36 1 3.1894 6.5529 -2.1507 37 1 3.0034 7.5594 -4.2762 38 1 2.0168 8.7535 -3.3693 39 1 0.9871 7.2482 -5.4602 40 1 -0.0148 7.8035 -4.0849 41 1 3.1241 -0.6148 1.3208 42 1 1.5704 -0.3042 2.1376 43 1 2.3016 -1.2434 4.6863 44 1 1.5871 -3.8356 -0.1249 45 1 3.1351 -2.9537 -0.1778 46 1 1.9113 -2.4477 -2.2264 47 1 0.4496 -2.0291 -1.3001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108047420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:41 Heat of formation + Delta-G solvation = 6.101757 kcal Electronic energy + Delta-G solvation = -29339.018883 eV Core-core repulsion = 25330.548403 eV Total energy + Delta-G solvation = -4008.470480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.90810 -41.06688 -40.02970 -37.73061 -36.55164 -35.95491 -33.55319 -33.21255 -32.58280 -29.73736 -29.59645 -28.63082 -28.09607 -27.45395 -25.04836 -24.72507 -22.86028 -22.48675 -21.20417 -21.00389 -20.26339 -18.95779 -18.52921 -18.17331 -17.47791 -17.23943 -16.81133 -16.78130 -16.12213 -16.01854 -15.62534 -15.43318 -15.39377 -15.18787 -14.69778 -14.48924 -14.31559 -13.98251 -13.75269 -13.63064 -13.45170 -13.19951 -12.94007 -12.83677 -12.76068 -12.54058 -12.44866 -12.18432 -12.04009 -12.01513 -11.97024 -11.86176 -11.70127 -11.37919 -11.10486 -10.75505 -10.50366 -10.48955 -10.10646 -9.61214 -8.71313 -7.89074 -5.36449 0.43694 1.06594 1.46376 1.48632 1.55505 1.68957 2.09292 2.28621 2.48570 2.77721 3.19073 3.25989 3.49266 3.57916 3.72054 3.88755 3.99256 4.08394 4.11997 4.23889 4.27130 4.40903 4.44850 4.53977 4.59945 4.69158 4.71233 4.76318 4.82878 4.86798 4.94597 5.00525 5.04032 5.09166 5.10197 5.18899 5.19589 5.29252 5.32653 5.39018 5.39837 5.52757 5.61518 6.10792 6.29541 6.36217 6.41398 6.81903 7.06961 7.10100 7.76112 8.30911 9.16725 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.002567 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.962460 B =10906.574191 C =11420.292378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.094 3.906 3 C 0.148 3.852 4 N -0.695 5.695 5 C 0.594 3.406 6 O -0.570 6.570 7 C -0.021 4.021 8 N -0.261 5.261 9 N -0.345 5.345 10 H 0.462 0.538 11 C -0.003 4.003 12 C -0.198 4.198 13 C -0.055 4.055 14 C -0.106 4.106 15 C -0.030 4.030 16 C 0.169 3.831 17 N -0.607 5.607 18 C -0.261 4.261 19 H 0.074 0.926 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.103 3.897 27 C 0.052 3.948 28 O -0.387 6.387 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.108 0.892 41 H -0.005 1.005 42 H 0.068 0.932 43 H 0.251 0.749 44 H 0.073 0.927 45 H 0.013 0.987 46 H 0.117 0.883 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 17.489 -21.300 28.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.023 3.977 4 N -0.347 5.347 5 C 0.380 3.620 6 O -0.448 6.448 7 C -0.179 4.179 8 N -0.098 5.098 9 N -0.060 5.060 10 H 0.310 0.690 11 C -0.131 4.131 12 C -0.208 4.208 13 C -0.093 4.093 14 C -0.144 4.144 15 C -0.069 4.069 16 C 0.043 3.957 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.091 0.909 20 C -0.245 4.245 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.202 1.202 26 C -0.023 4.023 27 C -0.026 4.026 28 O -0.307 6.307 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.013 0.987 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.031 0.969 46 H 0.134 0.866 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.488 16.973 -20.986 27.760 hybrid contribution -0.367 -0.665 1.236 1.450 sum -6.855 16.309 -19.750 26.515 Atomic orbital electron populations 1.22097 0.94150 1.02868 1.01871 1.22193 0.94551 0.90396 0.87560 1.21124 0.98072 0.89204 0.89265 1.45726 1.48438 1.10354 1.30170 1.17303 0.80220 0.81378 0.83121 1.90757 1.37623 1.68833 1.47587 1.21185 1.03860 0.94318 0.98565 1.73648 1.16201 1.17839 1.02109 1.42690 1.35228 1.05073 1.23059 0.68973 1.22799 0.97853 0.93601 0.98845 1.21304 1.05379 0.94432 0.99686 1.20539 0.99025 0.90156 0.99593 1.22475 0.97503 1.00047 0.94373 1.20845 0.99966 0.83621 1.02426 1.21037 0.95538 0.84380 0.94786 1.44230 1.68709 1.05472 1.14666 1.19466 1.21142 1.12428 0.86016 0.90864 1.25816 0.98754 1.00707 0.99230 1.70169 1.30995 1.38455 1.18555 0.85340 0.79027 0.78032 0.78050 1.20044 1.22294 1.20157 1.21808 0.97088 0.96302 0.87052 1.23120 0.99061 0.81776 0.98613 1.87846 1.73194 1.26591 1.43060 0.91729 0.92459 0.91066 0.90517 0.92111 0.74827 0.90453 0.92219 0.89988 0.87267 0.87529 0.87355 0.98696 0.91335 0.94011 0.90834 0.96880 0.86561 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 7.86 71.98 0.57 -4.83 16 2 C 0.09 3.71 0.78 -10.70 -0.01 3.70 16 3 C 0.15 5.63 4.85 86.38 0.42 6.05 16 4 N -0.70 -23.42 5.19 -466.09 -2.42 -25.84 16 5 C 0.59 21.18 7.82 86.75 0.68 21.86 16 6 O -0.57 -23.87 16.93 -3.96 -0.07 -23.94 16 7 C -0.02 -0.61 7.13 42.42 0.30 -0.31 16 8 N -0.26 -6.37 11.93 -48.24 -0.58 -6.94 16 9 N -0.34 -5.50 6.84 -47.57 -0.33 -5.82 16 10 H 0.46 3.28 8.96 -219.99 -1.97 1.31 16 11 C 0.00 -0.05 8.12 41.47 0.34 0.29 16 12 C -0.20 -4.81 6.82 -19.75 -0.13 -4.95 16 13 C -0.05 -1.06 6.78 30.44 0.21 -0.85 16 14 C -0.11 -0.97 7.13 31.61 0.23 -0.74 16 15 C -0.03 -0.21 6.78 30.52 0.21 0.00 16 16 C 0.17 8.41 4.11 86.35 0.35 8.76 16 17 N -0.61 -30.51 2.57 -697.50 -1.79 -32.30 16 18 C -0.26 -14.13 9.65 84.03 0.81 -13.32 16 19 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 20 C -0.05 -2.76 4.95 84.86 0.42 -2.34 16 21 N -0.94 -55.86 11.14 21.65 0.24 -55.62 16 22 Si 0.97 44.72 29.58 68.60 2.03 46.75 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 26 C 0.10 4.26 6.73 86.35 0.58 4.84 16 27 C 0.05 1.75 6.60 72.08 0.48 2.22 16 28 O -0.39 -14.71 10.17 -148.98 -1.52 -16.23 16 29 H 0.06 2.42 6.12 -2.39 -0.01 2.41 16 30 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.07 2.11 6.59 -2.39 -0.02 2.10 16 32 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.41 12.65 6.73 -92.71 -0.62 12.03 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 41 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 42 H 0.07 3.77 6.16 -2.39 -0.01 3.76 16 43 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 44 H 0.07 2.82 7.96 -2.38 -0.02 2.81 16 45 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 47 H 0.06 1.92 6.26 -2.39 -0.01 1.90 16 Total: -1.00 -75.96 374.46 -0.56 -76.52 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -1.58 Total: 23.03 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 5.44 Total: 20.38 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -4.87 Total: -126.52 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.58 Total: -40.17 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -75.96 -0.56 -76.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108047420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.625 kcal (2) G-P(sol) polarization free energy of solvation -75.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds