Wall clock time and date at job start Tue Mar 31 2020 19:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.51655 * 2 1 4 4 N 1.46498 * 109.46632 * 305.10562 * 3 2 1 5 5 C 1.34782 * 119.99634 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00007 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99741 * 179.97438 * 5 4 3 8 8 C 1.53006 * 109.46813 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.46785 * 180.02562 * 8 7 5 10 10 C 1.38601 * 120.79870 * 90.00049 * 9 8 7 11 11 N 1.32333 * 119.10624 * 179.97438 * 10 9 8 12 12 C 1.31800 * 120.81287 * 0.02562 * 11 10 9 13 13 N 1.31796 * 121.75769 * 0.27598 * 12 11 10 14 14 C 1.32329 * 120.81750 * 359.44047 * 13 12 11 15 15 C 1.53292 * 109.51731 * 120.10356 * 2 1 3 16 16 N 1.47158 * 108.38545 * 67.66851 * 15 2 1 17 17 C 1.36934 * 120.98027 * 230.51631 * 16 15 2 18 18 H 1.08002 * 119.99419 * 153.32817 * 17 16 15 19 19 C 1.38811 * 120.00297 * 333.32576 * 17 16 15 20 20 N 1.31615 * 120.00171 * 343.55007 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 163.55209 * 19 17 16 22 22 H 1.48497 * 109.47679 * 89.99751 * 21 19 17 23 23 H 1.48500 * 109.47110 * 209.99948 * 21 19 17 24 24 H 1.48510 * 109.47123 * 329.99739 * 21 19 17 25 25 C 1.47150 * 118.03154 * 50.53647 * 16 15 2 26 26 C 1.53289 * 108.38670 * 309.46564 * 25 16 15 27 27 O 1.42958 * 109.22482 * 52.30460 * 26 25 16 28 28 H 1.08996 * 109.47396 * 59.99624 * 1 2 3 29 29 H 1.09000 * 109.47308 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46408 * 299.99807 * 1 2 3 31 31 H 1.08995 * 109.47375 * 185.10738 * 3 2 1 32 32 H 1.09001 * 109.47100 * 65.09960 * 3 2 1 33 33 H 0.96997 * 120.00864 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.46868 * 60.00812 * 7 5 4 35 35 H 1.08994 * 109.47309 * 300.00231 * 7 5 4 36 36 H 1.08995 * 109.46806 * 60.00061 * 8 7 5 37 37 H 1.09007 * 109.47058 * 300.00174 * 8 7 5 38 38 H 1.08002 * 120.45041 * 359.96110 * 10 9 8 39 39 H 1.08007 * 119.11806 * 180.02562 * 12 11 10 40 40 H 1.07997 * 120.45314 * 180.25992 * 14 13 12 41 41 H 1.08999 * 109.68802 * 187.39215 * 15 2 1 42 42 H 1.08997 * 109.68014 * 307.91234 * 15 2 1 43 43 H 0.96992 * 120.00074 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.67985 * 69.19477 * 25 16 15 45 45 H 1.09003 * 109.68057 * 189.73893 * 25 16 15 46 46 H 1.09009 * 109.51023 * 172.22788 * 26 25 16 47 47 H 1.08998 * 109.51469 * 292.32856 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4556 2.1677 -1.1300 5 6 1.7643 3.4641 -1.3312 6 8 2.5273 4.0299 -0.5771 7 6 1.1624 4.2103 -2.4940 8 6 1.6734 5.6525 -2.4939 9 6 1.0710 6.3989 -3.6562 10 6 -0.1307 7.0757 -3.5189 11 7 -0.6291 7.7205 -4.5615 12 6 0.0024 7.7236 -5.7184 13 7 1.1437 7.0865 -5.8874 14 6 1.7051 6.4247 -4.8884 15 6 2.0421 -0.7247 1.2500 16 7 1.6971 -2.1505 1.1339 17 6 1.0628 -2.8075 2.1543 18 1 0.4445 -3.6670 1.9411 19 6 1.2146 -2.3690 3.4625 20 7 2.1966 -1.5492 3.7720 21 14 0.0252 -2.9427 4.7838 22 1 0.5390 -4.1899 5.4048 23 1 -0.1057 -1.8898 5.8228 24 1 -1.3034 -3.2043 4.1740 25 6 2.0542 -2.8494 -0.1108 26 6 1.5416 -2.0212 -1.2945 27 8 2.0085 -0.6762 -1.1652 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 3.1272 1.4427 -0.0915 32 1 1.7547 1.9291 0.9321 33 1 0.8456 1.7152 -1.7334 34 1 0.0762 4.2095 -2.4031 35 1 1.4495 3.7235 -3.4259 36 1 2.7596 5.6530 -2.5849 37 1 1.3867 6.1396 -1.5618 38 1 -0.6535 7.0766 -2.5739 39 1 -0.4290 8.2592 -6.5512 40 1 2.6425 5.9082 -5.0324 41 1 3.1241 -0.6135 1.3215 42 1 1.5704 -0.3034 2.1377 43 1 2.3029 -1.2431 4.6862 44 1 3.1374 -2.9521 -0.1763 45 1 1.5900 -3.8355 -0.1243 46 1 1.9140 -2.4479 -2.2259 47 1 0.4516 -2.0300 -1.3001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108073528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:52 Heat of formation + Delta-G solvation = -13.249723 kcal Electronic energy + Delta-G solvation = -28552.319965 eV Core-core repulsion = 24543.010342 eV Total energy + Delta-G solvation = -4009.309623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.39882 -39.87940 -38.85106 -35.32411 -34.81378 -34.36909 -34.06143 -31.91671 -31.30280 -30.56214 -28.00477 -26.87617 -26.07887 -24.96502 -24.87569 -23.27849 -22.42748 -21.20511 -20.26876 -18.74410 -18.00525 -17.97729 -17.39525 -17.00985 -16.00918 -15.72655 -15.42665 -15.20743 -15.01455 -14.69083 -14.32759 -14.10224 -14.03050 -13.95286 -13.66531 -13.56033 -13.55322 -13.04775 -12.73544 -12.61792 -12.43187 -11.95341 -11.64666 -11.47510 -11.24611 -11.20127 -11.18931 -11.05755 -10.86220 -10.70403 -10.36513 -10.30706 -10.07587 -9.96434 -9.67952 -9.58637 -9.55806 -9.08957 -8.89161 -8.58239 -6.77884 -5.88913 -3.32693 0.48470 0.68790 2.68010 3.20440 3.30665 3.38148 3.39218 3.42932 3.78470 3.84736 4.19108 4.21405 4.34532 4.39855 4.43272 4.65279 4.91261 4.92524 5.08641 5.14619 5.26934 5.30101 5.33933 5.42895 5.47466 5.61531 5.71814 5.75379 5.86700 5.88888 5.96655 6.01402 6.04287 6.08796 6.26008 6.40019 6.52465 6.56224 6.63226 6.70541 6.77644 7.02204 7.41672 7.59597 7.66646 7.68462 7.83111 8.27913 8.29409 9.06518 9.69469 10.26771 11.19153 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.002122 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.774166 B =13189.962856 C =13641.170672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.139 3.861 4 N -0.718 5.718 5 C 0.508 3.492 6 O -0.545 6.545 7 C -0.136 4.136 8 C -0.057 4.057 9 C -0.183 4.183 10 C 0.150 3.850 11 N -0.519 5.519 12 C 0.284 3.716 13 N -0.519 5.519 14 C 0.150 3.850 15 C 0.160 3.840 16 N -0.590 5.590 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.402 0.598 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.169 0.831 39 H 0.195 0.805 40 H 0.169 0.831 41 H 0.029 0.971 42 H 0.096 0.904 43 H 0.256 0.744 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 13.140 -16.157 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.015 3.985 4 N -0.369 5.369 5 C 0.294 3.706 6 O -0.423 6.423 7 C -0.176 4.176 8 C -0.096 4.096 9 C -0.187 4.187 10 C -0.016 4.016 11 N -0.232 5.232 12 C -0.004 4.004 13 N -0.232 5.232 14 C -0.016 4.016 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.214 1.214 24 H -0.205 1.205 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.304 6.304 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.186 0.814 39 H 0.211 0.789 40 H 0.186 0.814 41 H 0.047 0.953 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.019 14.161 -16.336 21.990 hybrid contribution -0.644 -1.234 1.323 1.921 sum -4.663 12.926 -15.013 20.352 Atomic orbital electron populations 1.22199 0.95803 1.03276 1.00617 1.22551 0.93528 0.90706 0.89550 1.21348 0.98757 0.89446 0.88924 1.46065 1.48741 1.10991 1.31137 1.20509 0.81690 0.82129 0.86256 1.90719 1.36133 1.67905 1.47529 1.21654 1.02215 0.95527 0.98224 1.20220 1.01396 0.92716 0.95265 1.21773 0.97843 1.01038 0.98093 1.23244 0.91501 0.89245 0.97604 1.68454 1.34869 1.19090 1.00778 1.24990 0.87849 0.93099 0.94439 1.68448 1.11929 1.08927 1.33893 1.23243 0.98546 0.92208 0.87575 1.21287 0.97849 0.83963 0.93586 1.43991 1.68641 1.04914 1.13861 1.19136 1.21452 1.12507 0.85311 0.91465 1.25054 0.97271 1.00046 0.97146 1.70003 1.29225 1.36775 1.18536 0.86299 0.80930 0.77967 0.81583 1.21314 1.21445 1.20471 1.21599 0.97557 0.95234 0.87370 1.23032 0.98286 0.83120 0.98739 1.87819 1.72914 1.25800 1.43848 0.94016 0.90775 0.91862 0.90827 0.89997 0.76323 0.88840 0.88775 0.89289 0.89301 0.81428 0.78858 0.81418 0.95252 0.88584 0.93398 0.95651 0.92043 0.90200 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 7.86 37.16 0.29 -2.31 16 2 C 0.08 1.38 0.78 -90.47 -0.07 1.31 16 3 C 0.14 2.24 4.85 -4.04 -0.02 2.22 16 4 N -0.72 -9.18 5.19 -60.29 -0.31 -9.50 16 5 C 0.51 6.28 7.83 -10.98 -0.09 6.20 16 6 O -0.55 -8.85 15.98 5.56 0.09 -8.76 16 7 C -0.14 -1.06 5.68 -27.88 -0.16 -1.22 16 8 C -0.06 -0.43 4.68 -27.88 -0.13 -0.56 16 9 C -0.18 -1.35 5.17 -104.36 -0.54 -1.89 16 10 C 0.15 1.16 11.01 -17.20 -0.19 0.97 16 11 N -0.52 -4.71 10.44 -14.58 -0.15 -4.87 16 12 C 0.28 2.36 12.29 -92.15 -1.13 1.23 16 13 N -0.52 -4.72 10.44 -14.58 -0.15 -4.87 16 14 C 0.15 1.16 11.01 -17.20 -0.19 0.97 16 15 C 0.16 3.62 4.10 -3.53 -0.01 3.60 16 16 N -0.59 -14.03 2.57 -171.83 -0.44 -14.47 16 17 C -0.25 -6.64 9.65 -15.06 -0.15 -6.79 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 20 N -0.90 -25.25 11.14 55.49 0.62 -24.63 16 21 Si 0.90 20.91 29.58 -169.99 -5.03 15.88 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 C 0.11 2.17 6.73 -3.54 -0.02 2.15 16 26 C 0.05 0.77 6.60 37.31 0.25 1.01 16 27 O -0.38 -6.78 10.18 -35.23 -0.36 -7.14 16 28 H 0.04 0.54 6.57 -51.93 -0.34 0.20 16 29 H 0.07 1.33 6.12 -51.93 -0.32 1.01 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.40 4.42 6.99 -40.82 -0.29 4.14 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 37 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 38 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.19 1.03 8.06 -52.48 -0.42 0.60 16 40 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 46 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 47 H 0.05 0.77 6.26 -51.93 -0.33 0.44 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -32.30 381.72 -9.27 -41.57 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.04 Total: 4.12 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -2.25 Total: 6.90 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.44 Total: -58.33 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.27 Total: -15.90 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.30 -9.27 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108073528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.321 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds