Wall clock time and date at job start Tue Mar 31 2020 19:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.51655 * 2 1 4 4 N 1.46498 * 109.46632 * 305.10562 * 3 2 1 5 5 C 1.34782 * 119.99634 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00007 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99741 * 179.97438 * 5 4 3 8 8 C 1.53006 * 109.46813 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.46785 * 180.02562 * 8 7 5 10 10 C 1.38601 * 120.79870 * 90.00049 * 9 8 7 11 11 N 1.32333 * 119.10624 * 179.97438 * 10 9 8 12 12 C 1.31800 * 120.81287 * 0.02562 * 11 10 9 13 13 N 1.31796 * 121.75769 * 0.27598 * 12 11 10 14 14 C 1.32329 * 120.81750 * 359.44047 * 13 12 11 15 15 C 1.53292 * 109.51731 * 120.10356 * 2 1 3 16 16 N 1.47158 * 108.38545 * 67.66851 * 15 2 1 17 17 C 1.36934 * 120.98027 * 230.51631 * 16 15 2 18 18 H 1.08002 * 119.99419 * 153.32817 * 17 16 15 19 19 C 1.38811 * 120.00297 * 333.32576 * 17 16 15 20 20 N 1.31615 * 120.00171 * 343.55007 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 163.55209 * 19 17 16 22 22 H 1.48497 * 109.47679 * 89.99751 * 21 19 17 23 23 H 1.48500 * 109.47110 * 209.99948 * 21 19 17 24 24 H 1.48510 * 109.47123 * 329.99739 * 21 19 17 25 25 C 1.47150 * 118.03154 * 50.53647 * 16 15 2 26 26 C 1.53289 * 108.38670 * 309.46564 * 25 16 15 27 27 O 1.42958 * 109.22482 * 52.30460 * 26 25 16 28 28 H 1.08996 * 109.47396 * 59.99624 * 1 2 3 29 29 H 1.09000 * 109.47308 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46408 * 299.99807 * 1 2 3 31 31 H 1.08995 * 109.47375 * 185.10738 * 3 2 1 32 32 H 1.09001 * 109.47100 * 65.09960 * 3 2 1 33 33 H 0.96997 * 120.00864 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.46868 * 60.00812 * 7 5 4 35 35 H 1.08994 * 109.47309 * 300.00231 * 7 5 4 36 36 H 1.08995 * 109.46806 * 60.00061 * 8 7 5 37 37 H 1.09007 * 109.47058 * 300.00174 * 8 7 5 38 38 H 1.08002 * 120.45041 * 359.96110 * 10 9 8 39 39 H 1.08007 * 119.11806 * 180.02562 * 12 11 10 40 40 H 1.07997 * 120.45314 * 180.25992 * 14 13 12 41 41 H 1.08999 * 109.68802 * 187.39215 * 15 2 1 42 42 H 1.08997 * 109.68014 * 307.91234 * 15 2 1 43 43 H 0.96992 * 120.00074 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.67985 * 69.19477 * 25 16 15 45 45 H 1.09003 * 109.68057 * 189.73893 * 25 16 15 46 46 H 1.09009 * 109.51023 * 172.22788 * 26 25 16 47 47 H 1.08998 * 109.51469 * 292.32856 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4556 2.1677 -1.1300 5 6 1.7643 3.4641 -1.3312 6 8 2.5273 4.0299 -0.5771 7 6 1.1624 4.2103 -2.4940 8 6 1.6734 5.6525 -2.4939 9 6 1.0710 6.3989 -3.6562 10 6 -0.1307 7.0757 -3.5189 11 7 -0.6291 7.7205 -4.5615 12 6 0.0024 7.7236 -5.7184 13 7 1.1437 7.0865 -5.8874 14 6 1.7051 6.4247 -4.8884 15 6 2.0421 -0.7247 1.2500 16 7 1.6971 -2.1505 1.1339 17 6 1.0628 -2.8075 2.1543 18 1 0.4445 -3.6670 1.9411 19 6 1.2146 -2.3690 3.4625 20 7 2.1966 -1.5492 3.7720 21 14 0.0252 -2.9427 4.7838 22 1 0.5390 -4.1899 5.4048 23 1 -0.1057 -1.8898 5.8228 24 1 -1.3034 -3.2043 4.1740 25 6 2.0542 -2.8494 -0.1108 26 6 1.5416 -2.0212 -1.2945 27 8 2.0085 -0.6762 -1.1652 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 3.1272 1.4427 -0.0915 32 1 1.7547 1.9291 0.9321 33 1 0.8456 1.7152 -1.7334 34 1 0.0762 4.2095 -2.4031 35 1 1.4495 3.7235 -3.4259 36 1 2.7596 5.6530 -2.5849 37 1 1.3867 6.1396 -1.5618 38 1 -0.6535 7.0766 -2.5739 39 1 -0.4290 8.2592 -6.5512 40 1 2.6425 5.9082 -5.0324 41 1 3.1241 -0.6135 1.3215 42 1 1.5704 -0.3034 2.1377 43 1 2.3029 -1.2431 4.6862 44 1 3.1374 -2.9521 -0.1763 45 1 1.5900 -3.8355 -0.1243 46 1 1.9140 -2.4479 -2.2259 47 1 0.4516 -2.0300 -1.3001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108073528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:51 Heat of formation + Delta-G solvation = -34.582519 kcal Electronic energy + Delta-G solvation = -28553.245025 eV Core-core repulsion = 24543.010342 eV Total energy + Delta-G solvation = -4010.234683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98106 -41.10042 -40.17299 -36.58189 -36.00640 -35.62412 -34.64798 -33.27374 -33.13967 -31.29878 -29.56683 -28.13236 -27.59116 -25.88754 -25.52965 -24.97534 -23.29396 -22.60969 -21.28455 -20.26665 -18.93924 -18.56687 -18.52962 -18.27048 -17.42843 -16.89544 -16.81801 -16.36612 -16.11820 -15.76607 -15.61102 -15.47813 -15.16920 -14.90766 -14.72926 -14.55938 -14.52542 -14.39601 -14.14588 -13.75833 -13.38029 -13.19830 -13.16812 -12.91604 -12.77505 -12.52438 -12.41865 -12.16959 -12.09598 -11.93748 -11.84904 -11.80467 -11.79745 -11.15154 -10.94365 -10.73477 -10.49346 -10.30685 -10.17861 -10.05825 -8.70709 -7.89685 -5.36727 -0.08200 0.11923 1.45591 1.47596 1.56603 1.70599 2.20496 2.48447 2.80483 2.82480 3.25149 3.28306 3.31954 3.51406 3.63817 3.69121 3.86923 3.94443 3.99618 4.04387 4.12056 4.28617 4.35953 4.43865 4.47112 4.56087 4.59489 4.66430 4.70473 4.73225 4.81035 4.82530 4.98219 5.06258 5.13439 5.14397 5.17307 5.22031 5.37562 5.43819 5.48120 5.54671 5.61899 5.99927 6.29931 6.38422 6.61111 7.07405 7.11370 7.30771 7.76589 8.30604 9.15910 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.002122 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.774166 B =13189.962856 C =13641.170672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 C 0.150 3.850 4 N -0.709 5.709 5 C 0.508 3.492 6 O -0.588 6.588 7 C -0.124 4.124 8 C -0.050 4.050 9 C -0.177 4.177 10 C 0.145 3.855 11 N -0.539 5.539 12 C 0.277 3.723 13 N -0.539 5.539 14 C 0.144 3.856 15 C 0.167 3.833 16 N -0.607 5.607 17 C -0.258 4.258 18 H 0.073 0.927 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.266 1.266 25 C 0.101 3.899 26 C 0.053 3.947 27 O -0.385 6.385 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.414 0.586 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.187 0.813 39 H 0.216 0.784 40 H 0.187 0.813 41 H -0.009 1.009 42 H 0.066 0.934 43 H 0.250 0.750 44 H 0.011 0.989 45 H 0.071 0.929 46 H 0.117 0.883 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 13.218 -18.434 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.052 3.948 3 C 0.024 3.976 4 N -0.362 5.362 5 C 0.296 3.704 6 O -0.468 6.468 7 C -0.163 4.163 8 C -0.089 4.089 9 C -0.181 4.181 10 C -0.021 4.021 11 N -0.252 5.252 12 C -0.010 4.010 13 N -0.253 5.253 14 C -0.021 4.021 15 C 0.040 3.960 16 N -0.331 5.331 17 C -0.388 4.388 18 H 0.091 0.909 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.794 3.206 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.191 1.191 25 C -0.024 4.024 26 C -0.024 4.024 27 O -0.304 6.304 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.252 0.748 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.204 0.796 39 H 0.232 0.768 40 H 0.203 0.797 41 H 0.009 0.991 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.029 0.971 45 H 0.089 0.911 46 H 0.135 0.865 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.943 14.219 -18.670 24.209 hybrid contribution 0.023 -1.302 1.999 2.386 sum -5.920 12.918 -16.671 21.905 Atomic orbital electron populations 1.22104 0.93900 1.02809 1.02189 1.22190 0.94693 0.90714 0.87185 1.20959 0.97688 0.88966 0.89955 1.45913 1.48776 1.11226 1.30261 1.21321 0.80748 0.81614 0.86722 1.90711 1.38093 1.68659 1.49358 1.21655 1.03225 0.94833 0.96610 1.20112 1.01034 0.92627 0.95114 1.21649 0.97687 1.01078 0.97727 1.23613 0.91714 0.88699 0.98052 1.68509 1.35505 1.19884 1.01345 1.25458 0.87714 0.92911 0.94959 1.68503 1.12461 1.09730 1.34562 1.23607 0.99094 0.91885 0.87498 1.21069 0.95350 0.84376 0.95225 1.44249 1.68637 1.05569 1.14654 1.19486 1.20992 1.12317 0.86037 0.90939 1.25801 0.98793 1.00753 0.99230 1.70174 1.31090 1.38514 1.18445 0.85302 0.79434 0.76990 0.78874 1.21405 1.22083 1.19109 1.21825 0.96970 0.96381 0.87273 1.23090 0.99107 0.81839 0.98372 1.87831 1.73258 1.26351 1.42963 0.90093 0.92184 0.92617 0.92850 0.91223 0.74814 0.86404 0.86573 0.89897 0.89822 0.79617 0.76804 0.79656 0.99111 0.91555 0.94071 0.97091 0.91056 0.86525 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 7.86 71.98 0.57 -4.07 16 2 C 0.09 3.26 0.78 -10.69 -0.01 3.25 16 3 C 0.15 4.84 4.85 86.38 0.42 5.26 16 4 N -0.71 -16.76 5.19 -463.05 -2.41 -19.17 16 5 C 0.51 11.66 7.83 87.66 0.69 12.34 16 6 O -0.59 -18.91 15.98 -3.02 -0.05 -18.96 16 7 C -0.12 -1.54 5.68 29.85 0.17 -1.37 16 8 C -0.05 -0.65 4.68 29.85 0.14 -0.51 16 9 C -0.18 -2.21 5.17 -19.69 -0.10 -2.31 16 10 C 0.14 1.93 11.01 84.70 0.93 2.87 16 11 N -0.54 -8.88 10.44 -200.03 -2.09 -10.97 16 12 C 0.28 4.17 12.29 180.88 2.22 6.39 16 13 N -0.54 -8.90 10.44 -200.04 -2.09 -10.99 16 14 C 0.14 1.94 11.01 84.70 0.93 2.87 16 15 C 0.17 7.82 4.10 86.35 0.35 8.18 16 16 N -0.61 -29.21 2.57 -697.56 -1.79 -31.00 16 17 C -0.26 -13.58 9.65 84.03 0.81 -12.77 16 18 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 19 C -0.05 -2.73 4.95 84.86 0.42 -2.31 16 20 N -0.94 -54.55 11.14 21.65 0.24 -54.31 16 21 Si 0.97 43.56 29.58 68.60 2.03 45.59 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 25 C 0.10 3.96 6.73 86.35 0.58 4.54 16 26 C 0.05 1.62 6.60 72.08 0.48 2.10 16 27 O -0.38 -12.82 10.18 -148.98 -1.52 -14.34 16 28 H 0.08 1.81 6.57 -2.39 -0.02 1.80 16 29 H 0.06 2.02 6.12 -2.39 -0.01 2.01 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.41 7.64 6.99 -92.71 -0.65 6.99 16 34 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.20 8.06 -2.39 -0.02 1.18 16 37 H 0.08 1.20 8.06 -2.38 -0.02 1.18 16 38 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 39 H 0.22 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.07 3.50 6.16 -2.39 -0.01 3.48 16 43 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.07 2.61 7.96 -2.39 -0.02 2.60 16 46 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 47 H 0.06 1.75 6.26 -2.39 -0.01 1.73 16 Total: -1.00 -72.59 381.72 1.27 -71.32 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.34 Total: 18.36 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 8.60 Total: 24.46 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -8.13 Total: -126.44 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.56 Total: -33.29 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -72.59 1.27 -71.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108073528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.733 kcal (2) G-P(sol) polarization free energy of solvation -72.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds