Wall clock time and date at job start Tue Mar 31 2020 19:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.55421 * 2 1 4 4 N 1.46502 * 109.47082 * 60.12625 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21576 * 119.99664 * 0.02562 * 5 4 3 7 7 C 1.47703 * 120.00229 * 179.97438 * 5 4 3 8 8 C 1.41502 * 126.51818 * 179.97438 * 7 5 4 9 9 C 1.35369 * 105.50784 * 179.97438 * 8 7 5 10 10 C 1.50692 * 126.38785 * 180.02562 * 9 8 7 11 11 C 1.53002 * 117.49782 * 213.74588 * 10 9 8 12 12 C 1.53001 * 117.49540 * 145.08650 * 10 9 8 13 13 N 1.35034 * 107.22325 * 0.02562 * 9 8 7 14 14 H 0.96998 * 124.88581 * 180.02562 * 13 9 8 15 15 N 1.28472 * 110.23266 * 359.74516 * 13 9 8 16 16 C 1.53294 * 109.51505 * 239.87181 * 2 1 3 17 17 N 1.47231 * 108.40580 * 292.38573 * 16 2 1 18 18 C 1.36930 * 121.03478 * 129.45775 * 17 16 2 19 19 H 1.08002 * 120.00530 * 206.18179 * 18 17 16 20 20 C 1.38816 * 119.99608 * 26.18409 * 18 17 16 21 21 N 1.31615 * 120.00526 * 16.88476 * 20 18 17 22 22 Si 1.86806 * 119.99896 * 196.88547 * 20 18 17 23 23 H 1.48497 * 109.46975 * 59.99586 * 22 20 18 24 24 H 1.48495 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47064 * 300.00118 * 22 20 18 26 26 C 1.47154 * 117.98080 * 309.48144 * 17 16 2 27 27 C 1.53298 * 108.41825 * 50.52276 * 26 17 16 28 28 O 1.42959 * 109.51115 * 120.12529 * 2 1 3 29 29 H 1.09004 * 109.46996 * 299.87189 * 1 2 3 30 30 H 1.08996 * 109.47344 * 59.87067 * 1 2 3 31 31 H 1.09000 * 109.46808 * 179.87595 * 1 2 3 32 32 H 1.09002 * 109.47344 * 180.12437 * 3 2 1 33 33 H 1.08999 * 109.46999 * 300.12635 * 3 2 1 34 34 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 35 35 H 1.08010 * 127.24903 * 359.96199 * 8 7 5 36 36 H 1.08997 * 115.55430 * 359.41763 * 10 9 8 37 37 H 1.08997 * 117.49865 * 0.02562 * 11 10 9 38 38 H 1.09000 * 117.49609 * 145.02270 * 11 10 9 39 39 H 1.09003 * 117.49954 * 214.97633 * 12 10 9 40 40 H 1.08994 * 117.50187 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.68145 * 52.09850 * 16 2 1 42 42 H 1.09001 * 109.68444 * 172.65236 * 16 2 1 43 43 H 0.97002 * 120.00383 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.68310 * 290.77594 * 26 17 16 45 45 H 1.09005 * 109.67869 * 170.26376 * 26 17 16 46 46 H 1.09001 * 109.51044 * 67.59999 * 27 26 17 47 47 H 1.09000 * 109.51036 * 187.70217 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5572 2.1322 1.1977 5 6 1.8847 3.4220 1.4111 6 8 2.5820 4.0127 0.6093 7 6 1.3954 4.1183 2.6183 8 6 1.6534 5.4623 2.9780 9 6 1.0051 5.6539 4.1508 10 6 0.9673 6.9287 4.9534 11 6 0.9149 6.8028 6.4774 12 6 -0.3264 7.2534 5.7031 13 7 0.3986 4.4897 4.4673 14 1 -0.1390 4.3421 5.2611 15 7 0.6313 3.6073 3.5630 16 6 2.0421 -0.7252 -1.2497 17 7 1.6959 -2.1516 -1.1340 18 6 1.0613 -2.8090 -2.1539 19 1 0.4490 -3.6729 -1.9412 20 6 1.2049 -2.3650 -3.4612 21 7 2.1856 -1.5448 -3.7738 22 14 0.0060 -2.9315 -4.7770 23 1 -1.3700 -2.5146 -4.4056 24 1 0.3739 -2.3190 -6.0788 25 1 0.0607 -4.4111 -4.8926 26 6 2.0522 -2.8497 0.1114 27 6 1.5396 -2.0210 1.2949 28 8 2.0075 -0.6763 1.1655 29 1 -0.3633 0.5119 0.8912 30 1 -0.3634 0.5158 -0.8888 31 1 -0.3633 -1.0277 -0.0022 32 1 3.1321 1.4402 -0.0022 33 1 1.6776 1.9568 -0.8888 34 1 1.0005 1.6610 1.8372 35 1 2.2435 6.1834 2.4319 36 1 1.5304 7.7637 4.5366 37 1 0.9082 5.7978 6.8993 38 1 1.4433 7.5551 7.0630 39 1 -0.6141 8.3019 5.7798 40 1 -1.1502 6.5451 5.6154 41 1 1.5705 -0.3042 -2.1376 42 1 3.1241 -0.6147 -1.3208 43 1 2.2857 -1.2342 -4.6873 44 1 3.1352 -2.9532 0.1774 45 1 1.5878 -3.8358 0.1252 46 1 0.4496 -2.0284 1.2995 47 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108236049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:54 Heat of formation + Delta-G solvation = 46.898412 kcal Electronic energy + Delta-G solvation = -28916.949794 eV Core-core repulsion = 24910.248390 eV Total energy + Delta-G solvation = -4006.701404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.93582 -39.55444 -38.56848 -37.63435 -34.87173 -34.27322 -32.24248 -31.57997 -31.22483 -30.64327 -27.90699 -26.59939 -25.77150 -24.10611 -23.23384 -23.05014 -22.99262 -21.33442 -21.07683 -19.85029 -18.60553 -18.02860 -17.16007 -16.81388 -16.13060 -15.97628 -15.74948 -15.25813 -15.07069 -14.55669 -14.41473 -14.31470 -13.97216 -13.82211 -13.60085 -13.45701 -12.98413 -12.74790 -12.58369 -12.43110 -12.20660 -11.85635 -11.57468 -11.53197 -11.20849 -11.15259 -10.98931 -10.93232 -10.77470 -10.64980 -10.28381 -10.23848 -10.07577 -9.87602 -9.56544 -9.49530 -9.04636 -9.00418 -8.72918 -8.50983 -6.71422 -5.81967 -3.25171 1.44128 1.83454 2.56094 3.33466 3.35704 3.37562 3.42961 3.43312 3.53730 3.95265 4.19036 4.28244 4.35965 4.36983 4.46019 4.62669 5.01640 5.12083 5.19847 5.26338 5.36780 5.40207 5.44483 5.45315 5.53813 5.56995 5.69958 5.74642 5.96753 5.98896 6.06770 6.13725 6.18646 6.19997 6.35818 6.51964 6.62239 6.68583 6.74403 6.81014 6.86773 7.10983 7.50003 7.54875 7.72603 7.85595 7.93236 8.35353 8.40938 9.13158 9.76378 10.33942 11.26002 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.002322 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.083047 B =12053.905990 C =12444.659757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 C 0.139 3.861 4 N -0.702 5.702 5 C 0.597 3.403 6 O -0.536 6.536 7 C -0.002 4.002 8 C -0.169 4.169 9 C 0.042 3.958 10 C -0.085 4.085 11 C -0.174 4.174 12 C -0.174 4.174 13 N -0.382 5.382 14 H 0.441 0.559 15 N -0.254 5.254 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.067 0.933 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.383 6.383 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.408 0.592 35 H 0.164 0.836 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.030 0.970 43 H 0.256 0.744 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 15.380 20.305 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 C 0.015 3.985 4 N -0.353 5.353 5 C 0.380 3.620 6 O -0.412 6.412 7 C -0.163 4.163 8 C -0.197 4.197 9 C -0.083 4.083 10 C -0.105 4.105 11 C -0.212 4.212 12 C -0.212 4.212 13 N -0.096 5.096 14 H 0.285 0.715 15 N -0.090 5.090 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.017 4.017 27 C -0.032 4.032 28 O -0.303 6.303 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.244 0.756 35 H 0.181 0.819 36 H 0.151 0.849 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.889 14.910 19.887 25.332 hybrid contribution -0.885 -0.084 -0.372 0.963 sum -5.774 14.825 19.516 25.179 Atomic orbital electron populations 1.22209 0.95747 1.03198 1.00822 1.22547 0.93600 0.90589 0.89515 1.21425 1.00064 0.89961 0.87024 1.45839 1.52709 1.11032 1.25711 1.16875 0.80122 0.81610 0.83360 1.90801 1.38272 1.66525 1.45575 1.22028 1.02702 0.94596 0.96987 1.21455 1.05304 0.96445 0.96483 1.20429 1.01193 0.88950 0.97749 1.20522 1.02943 0.94522 0.92502 1.23111 1.01736 1.03343 0.92995 1.23113 0.91389 1.03278 1.03388 1.43200 1.39319 1.07273 1.19840 0.71464 1.73614 1.17330 1.18296 0.99741 1.21313 0.97853 0.83900 0.93642 1.43998 1.68643 1.04958 1.13802 1.19106 1.21710 1.12141 0.85391 0.91495 1.25035 0.97295 1.00134 0.97075 1.70001 1.29204 1.36704 1.18618 0.86361 0.81011 0.78300 0.81046 1.21011 1.21547 1.20889 1.21597 0.97545 0.95190 0.87379 1.23029 0.98303 0.83169 0.98675 1.87822 1.72856 1.25780 1.43805 0.93831 0.91891 0.90842 0.90583 0.89812 0.75574 0.81863 0.84852 0.88774 0.87521 0.87528 0.88770 0.88505 0.95179 0.93365 0.95657 0.92103 0.93409 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 7.92 37.16 0.29 -2.61 16 2 C 0.08 1.51 0.76 -90.47 -0.07 1.44 16 3 C 0.14 2.50 4.82 -4.04 -0.02 2.48 16 4 N -0.70 -11.41 5.15 -61.29 -0.32 -11.73 16 5 C 0.60 10.02 7.82 -12.39 -0.10 9.92 16 6 O -0.54 -10.48 16.93 5.30 0.09 -10.39 16 7 C 0.00 -0.03 7.13 -82.77 -0.59 -0.62 16 8 C -0.17 -2.00 10.73 -39.36 -0.42 -2.42 16 9 C 0.04 0.38 6.64 -82.21 -0.55 -0.17 16 10 C -0.09 -0.49 6.26 -91.77 -0.57 -1.06 16 11 C -0.17 -0.72 10.22 -26.69 -0.27 -0.99 16 12 C -0.17 -0.72 10.23 -26.69 -0.27 -0.99 16 13 N -0.38 -3.40 6.80 33.50 0.23 -3.17 16 14 H 0.44 2.40 8.96 -190.44 -1.71 0.70 16 15 N -0.25 -3.15 11.92 33.42 0.40 -2.76 16 16 C 0.16 3.77 4.12 -3.49 -0.01 3.75 16 17 N -0.59 -14.53 2.57 -171.76 -0.44 -14.97 16 18 C -0.25 -6.81 9.65 -15.06 -0.15 -6.95 16 19 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 21 N -0.90 -25.81 11.14 55.49 0.62 -25.19 16 22 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.11 2.28 6.73 -3.53 -0.02 2.25 16 27 C 0.05 0.82 6.60 37.31 0.25 1.07 16 28 O -0.38 -7.33 9.97 -35.23 -0.35 -7.68 16 29 H 0.04 0.68 6.88 -51.93 -0.36 0.32 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.42 6.11 -51.93 -0.32 1.10 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.41 6.26 6.93 -40.82 -0.28 5.98 16 35 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 2.51 6.14 -51.93 -0.32 2.19 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 46 H 0.05 0.83 6.25 -51.93 -0.32 0.50 16 47 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -32.61 383.01 -9.97 -42.58 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.34 Total: 6.03 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -2.59 Total: 5.12 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.49 Total: -57.82 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.26 Total: -18.08 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.61 -9.97 -42.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108236049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.477 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds