Wall clock time and date at job start Tue Mar 31 2020 19:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.55421 * 2 1 4 4 N 1.46502 * 109.47082 * 60.12625 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21576 * 119.99664 * 0.02562 * 5 4 3 7 7 C 1.47703 * 120.00229 * 179.97438 * 5 4 3 8 8 C 1.41502 * 126.51818 * 179.97438 * 7 5 4 9 9 C 1.35369 * 105.50784 * 179.97438 * 8 7 5 10 10 C 1.50692 * 126.38785 * 180.02562 * 9 8 7 11 11 C 1.53002 * 117.49782 * 213.74588 * 10 9 8 12 12 C 1.53001 * 117.49540 * 145.08650 * 10 9 8 13 13 N 1.35034 * 107.22325 * 0.02562 * 9 8 7 14 14 H 0.96998 * 124.88581 * 180.02562 * 13 9 8 15 15 N 1.28472 * 110.23266 * 359.74516 * 13 9 8 16 16 C 1.53294 * 109.51505 * 239.87181 * 2 1 3 17 17 N 1.47231 * 108.40580 * 292.38573 * 16 2 1 18 18 C 1.36930 * 121.03478 * 129.45775 * 17 16 2 19 19 H 1.08002 * 120.00530 * 206.18179 * 18 17 16 20 20 C 1.38816 * 119.99608 * 26.18409 * 18 17 16 21 21 N 1.31615 * 120.00526 * 16.88476 * 20 18 17 22 22 Si 1.86806 * 119.99896 * 196.88547 * 20 18 17 23 23 H 1.48497 * 109.46975 * 59.99586 * 22 20 18 24 24 H 1.48495 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47064 * 300.00118 * 22 20 18 26 26 C 1.47154 * 117.98080 * 309.48144 * 17 16 2 27 27 C 1.53298 * 108.41825 * 50.52276 * 26 17 16 28 28 O 1.42959 * 109.51115 * 120.12529 * 2 1 3 29 29 H 1.09004 * 109.46996 * 299.87189 * 1 2 3 30 30 H 1.08996 * 109.47344 * 59.87067 * 1 2 3 31 31 H 1.09000 * 109.46808 * 179.87595 * 1 2 3 32 32 H 1.09002 * 109.47344 * 180.12437 * 3 2 1 33 33 H 1.08999 * 109.46999 * 300.12635 * 3 2 1 34 34 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 35 35 H 1.08010 * 127.24903 * 359.96199 * 8 7 5 36 36 H 1.08997 * 115.55430 * 359.41763 * 10 9 8 37 37 H 1.08997 * 117.49865 * 0.02562 * 11 10 9 38 38 H 1.09000 * 117.49609 * 145.02270 * 11 10 9 39 39 H 1.09003 * 117.49954 * 214.97633 * 12 10 9 40 40 H 1.08994 * 117.50187 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.68145 * 52.09850 * 16 2 1 42 42 H 1.09001 * 109.68444 * 172.65236 * 16 2 1 43 43 H 0.97002 * 120.00383 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.68310 * 290.77594 * 26 17 16 45 45 H 1.09005 * 109.67869 * 170.26376 * 26 17 16 46 46 H 1.09001 * 109.51044 * 67.59999 * 27 26 17 47 47 H 1.09000 * 109.51036 * 187.70217 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5572 2.1322 1.1977 5 6 1.8847 3.4220 1.4111 6 8 2.5820 4.0127 0.6093 7 6 1.3954 4.1183 2.6183 8 6 1.6534 5.4623 2.9780 9 6 1.0051 5.6539 4.1508 10 6 0.9673 6.9287 4.9534 11 6 0.9149 6.8028 6.4774 12 6 -0.3264 7.2534 5.7031 13 7 0.3986 4.4897 4.4673 14 1 -0.1390 4.3421 5.2611 15 7 0.6313 3.6073 3.5630 16 6 2.0421 -0.7252 -1.2497 17 7 1.6959 -2.1516 -1.1340 18 6 1.0613 -2.8090 -2.1539 19 1 0.4490 -3.6729 -1.9412 20 6 1.2049 -2.3650 -3.4612 21 7 2.1856 -1.5448 -3.7738 22 14 0.0060 -2.9315 -4.7770 23 1 -1.3700 -2.5146 -4.4056 24 1 0.3739 -2.3190 -6.0788 25 1 0.0607 -4.4111 -4.8926 26 6 2.0522 -2.8497 0.1114 27 6 1.5396 -2.0210 1.2949 28 8 2.0075 -0.6763 1.1655 29 1 -0.3633 0.5119 0.8912 30 1 -0.3634 0.5158 -0.8888 31 1 -0.3633 -1.0277 -0.0022 32 1 3.1321 1.4402 -0.0022 33 1 1.6776 1.9568 -0.8888 34 1 1.0005 1.6610 1.8372 35 1 2.2435 6.1834 2.4319 36 1 1.5304 7.7637 4.5366 37 1 0.9082 5.7978 6.8993 38 1 1.4433 7.5551 7.0630 39 1 -0.6141 8.3019 5.7798 40 1 -1.1502 6.5451 5.6154 41 1 1.5705 -0.3042 -2.1376 42 1 3.1241 -0.6147 -1.3208 43 1 2.2857 -1.2342 -4.6873 44 1 3.1352 -2.9532 0.1774 45 1 1.5878 -3.8358 0.1252 46 1 0.4496 -2.0284 1.2995 47 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108236049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:53 Heat of formation + Delta-G solvation = 24.445906 kcal Electronic energy + Delta-G solvation = -28917.923408 eV Core-core repulsion = 24910.248390 eV Total energy + Delta-G solvation = -4007.675018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.79138 -41.05090 -40.04064 -38.06408 -36.54774 -35.93788 -33.48949 -33.19911 -32.69998 -31.52326 -29.58055 -28.13446 -27.53063 -25.10259 -24.90803 -24.04019 -23.26845 -22.72819 -22.12200 -21.10467 -20.22310 -18.93810 -18.72815 -18.05900 -17.46092 -16.97952 -16.93087 -16.66031 -16.35774 -16.09776 -15.77407 -15.55366 -15.41282 -15.18457 -15.05345 -14.66424 -14.51208 -14.28193 -13.97801 -13.44346 -13.19164 -13.13863 -12.92449 -12.75166 -12.52792 -12.45781 -12.43867 -12.17549 -12.05046 -12.00305 -11.95953 -11.84413 -11.47745 -11.31542 -11.08616 -10.74846 -10.53747 -10.48733 -10.10702 -9.77653 -8.70899 -7.88239 -5.34930 0.44686 0.98370 1.46920 1.49330 1.56081 1.77344 2.14652 2.30648 2.49449 2.79179 3.00825 3.25174 3.32230 3.43870 3.50819 3.78053 3.90214 4.00848 4.04361 4.10665 4.11372 4.24284 4.42356 4.46590 4.56859 4.57228 4.63224 4.70635 4.76420 4.76904 4.80548 4.96550 5.01592 5.05577 5.11565 5.15043 5.20283 5.20997 5.25410 5.31966 5.34637 5.54147 5.62399 6.00968 6.30159 6.37343 6.42021 6.81360 7.07750 7.11130 7.77106 8.31744 9.17455 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.002322 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.083047 B =12053.905990 C =12444.659757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.094 3.906 3 C 0.147 3.853 4 N -0.693 5.693 5 C 0.596 3.404 6 O -0.573 6.573 7 C -0.029 4.029 8 C -0.194 4.194 9 C 0.067 3.933 10 C -0.105 4.105 11 C -0.165 4.165 12 C -0.164 4.164 13 N -0.363 5.363 14 H 0.458 0.542 15 N -0.263 5.263 16 C 0.168 3.832 17 N -0.606 5.606 18 C -0.260 4.260 19 H 0.074 0.926 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.103 3.897 27 C 0.052 3.948 28 O -0.386 6.386 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.415 0.585 35 H 0.164 0.836 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.069 0.931 42 H -0.005 1.005 43 H 0.251 0.749 44 H 0.013 0.987 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 16.006 23.380 29.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.023 3.977 4 N -0.344 5.344 5 C 0.382 3.618 6 O -0.451 6.451 7 C -0.189 4.189 8 C -0.222 4.222 9 C -0.060 4.060 10 C -0.125 4.125 11 C -0.202 4.202 12 C -0.202 4.202 13 N -0.080 5.080 14 H 0.306 0.694 15 N -0.100 5.100 16 C 0.041 3.959 17 N -0.331 5.331 18 C -0.390 4.390 19 H 0.091 0.909 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.795 3.205 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.201 1.201 26 C -0.023 4.023 27 C -0.025 4.025 28 O -0.306 6.306 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.253 0.747 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.116 0.884 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.013 0.987 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.967 15.504 23.026 28.620 hybrid contribution -0.224 -0.281 -1.195 1.248 sum -7.191 15.224 21.830 27.569 Atomic orbital electron populations 1.22102 0.94131 1.02824 1.01933 1.22195 0.94541 0.90422 0.87539 1.21152 0.99097 0.89614 0.87837 1.45669 1.52672 1.11022 1.25073 1.17242 0.79348 0.81362 0.83851 1.90770 1.39932 1.67241 1.47122 1.21671 1.04762 0.95540 0.96923 1.21609 1.06787 0.95798 0.98008 1.20763 0.98838 0.89712 0.96654 1.20663 1.05174 0.93212 0.93454 1.23227 1.01466 1.04068 0.91434 1.23226 0.90888 1.04269 1.01789 1.43262 1.38433 1.06753 1.19531 0.69397 1.73524 1.17270 1.19142 1.00018 1.21068 0.95548 0.84363 0.94908 1.44247 1.68671 1.05498 1.14647 1.19462 1.21362 1.12059 0.86079 0.90879 1.25800 0.98823 1.00774 0.99168 1.70172 1.31033 1.38380 1.18558 0.85345 0.79087 0.77987 0.78060 1.20178 1.22319 1.20093 1.21808 0.97068 0.96302 0.87093 1.23113 0.99046 0.81789 0.98574 1.87833 1.73198 1.26547 1.42998 0.91019 0.92466 0.91829 0.92158 0.90358 0.74747 0.81824 0.83965 0.88358 0.86219 0.86228 0.88373 0.91284 0.98674 0.94022 0.96897 0.90905 0.92238 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 7.92 71.98 0.57 -4.75 16 2 C 0.09 3.65 0.76 -10.69 -0.01 3.64 16 3 C 0.15 5.49 4.82 86.38 0.42 5.91 16 4 N -0.69 -22.60 5.15 -466.10 -2.40 -25.00 16 5 C 0.60 20.42 7.82 86.74 0.68 21.10 16 6 O -0.57 -23.30 16.93 -3.96 -0.07 -23.37 16 7 C -0.03 -0.82 7.13 42.45 0.30 -0.52 16 8 C -0.19 -4.50 10.73 22.41 0.24 -4.26 16 9 C 0.07 1.07 6.64 41.40 0.28 1.34 16 10 C -0.11 -0.92 6.26 -11.54 -0.07 -0.99 16 11 C -0.16 -0.79 10.22 30.62 0.31 -0.47 16 12 C -0.16 -0.79 10.23 30.62 0.31 -0.47 16 13 N -0.36 -5.61 6.80 -47.93 -0.33 -5.94 16 14 H 0.46 3.57 8.96 -219.99 -1.97 1.60 16 15 N -0.26 -6.12 11.92 -48.18 -0.57 -6.70 16 16 C 0.17 8.26 4.12 86.34 0.36 8.61 16 17 N -0.61 -30.28 2.57 -697.32 -1.79 -32.07 16 18 C -0.26 -14.02 9.65 84.04 0.81 -13.21 16 19 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 20 C -0.05 -2.78 4.95 84.86 0.42 -2.36 16 21 N -0.94 -55.61 11.14 21.65 0.24 -55.37 16 22 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 C 0.10 4.22 6.73 86.35 0.58 4.80 16 27 C 0.05 1.74 6.60 72.08 0.48 2.21 16 28 O -0.39 -14.36 9.97 -148.98 -1.49 -15.85 16 29 H 0.07 2.09 6.88 -2.38 -0.02 2.07 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 31 H 0.06 2.36 6.11 -2.39 -0.01 2.35 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.42 12.28 6.93 -92.71 -0.64 11.63 16 35 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.07 3.77 6.14 -2.39 -0.01 3.76 16 42 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.07 2.78 7.96 -2.38 -0.02 2.76 16 46 H 0.06 1.88 6.25 -2.39 -0.01 1.87 16 47 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -72.85 383.01 -0.31 -73.16 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -1.60 Total: 23.94 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.67 Total: 20.57 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -4.85 Total: -125.07 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -1.55 Total: -39.22 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -72.85 -0.31 -73.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108236049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.603 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds