Wall clock time and date at job start Tue Mar 31 2020 19:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.51311 * 2 1 4 4 N 1.46497 * 109.47260 * 305.09865 * 3 2 1 5 5 C 1.34781 * 120.00296 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99667 * 0.02562 * 5 4 3 7 7 C 1.50691 * 120.00420 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.47709 * 180.02562 * 7 5 4 9 9 C 1.50692 * 109.47338 * 180.02562 * 8 7 5 10 10 N 1.31805 * 119.12412 * 270.29529 * 9 8 7 11 11 C 1.32326 * 120.81625 * 180.27308 * 10 9 8 12 12 C 1.38597 * 119.10854 * 359.43473 * 11 10 9 13 13 C 1.38598 * 118.39978 * 0.28796 * 12 11 10 14 14 N 1.31794 * 119.12627 * 90.00048 * 9 8 7 15 15 C 1.53293 * 109.51301 * 120.10240 * 2 1 3 16 16 N 1.47157 * 108.38258 * 67.67024 * 15 2 1 17 17 C 1.36932 * 120.98037 * 230.51255 * 16 15 2 18 18 H 1.08002 * 120.00125 * 153.74570 * 17 16 15 19 19 C 1.38817 * 120.00436 * 333.74968 * 17 16 15 20 20 N 1.31615 * 120.00174 * 160.04074 * 19 17 16 21 21 Si 1.86796 * 119.99606 * 340.03577 * 19 17 16 22 22 H 1.48504 * 109.46790 * 91.88985 * 21 19 17 23 23 H 1.48503 * 109.47032 * 211.88979 * 21 19 17 24 24 H 1.48494 * 109.47405 * 331.88981 * 21 19 17 25 25 C 1.47151 * 118.03465 * 50.54269 * 16 15 2 26 26 C 1.53297 * 108.38204 * 309.45962 * 25 16 15 27 27 O 1.42958 * 109.22440 * 52.30244 * 26 25 16 28 28 H 1.09009 * 109.46991 * 60.00089 * 1 2 3 29 29 H 1.08996 * 109.47300 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47397 * 299.99953 * 1 2 3 31 31 H 1.09004 * 109.47104 * 185.10062 * 3 2 1 32 32 H 1.09002 * 109.47129 * 65.09969 * 3 2 1 33 33 H 0.96999 * 120.00253 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.47140 * 59.99933 * 7 5 4 35 35 H 1.09004 * 109.47490 * 300.00331 * 7 5 4 36 36 H 1.09004 * 109.46906 * 59.99998 * 8 7 5 37 37 H 1.09004 * 109.46702 * 300.00554 * 8 7 5 38 38 H 1.08003 * 120.44500 * 179.71830 * 11 10 9 39 39 H 1.07995 * 120.80445 * 180.25224 * 12 11 10 40 40 H 1.07997 * 120.45188 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.68686 * 187.39393 * 15 2 1 42 42 H 1.08998 * 109.67819 * 307.91623 * 15 2 1 43 43 H 0.96998 * 120.00203 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.68265 * 69.18076 * 25 16 15 45 45 H 1.09004 * 109.67697 * 189.74197 * 25 16 15 46 46 H 1.08997 * 109.51093 * 172.23137 * 26 25 16 47 47 H 1.09003 * 109.51343 * 292.32907 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.4556 2.1677 -1.1300 5 6 1.7643 3.4641 -1.3313 6 8 2.5272 4.0299 -0.5770 7 6 1.1617 4.2106 -2.4933 8 6 1.6728 5.6527 -2.4934 9 6 1.0697 6.3994 -3.6551 10 7 1.6973 6.3978 -4.8142 11 6 1.2006 7.0467 -5.8549 12 6 -0.0010 7.7235 -5.7167 13 6 -0.6342 7.6976 -4.4841 14 7 -0.0744 7.0317 -3.4868 15 6 2.0420 -0.7247 1.2500 16 7 1.6969 -2.1505 1.1339 17 6 1.0626 -2.8075 2.1542 18 1 0.4497 -3.6710 1.9418 19 6 1.2073 -2.3638 3.4615 20 7 0.3283 -2.7139 4.3764 21 14 2.6497 -1.2699 3.9222 22 1 2.2531 0.1548 3.7877 23 1 3.0488 -1.5423 5.3264 24 1 3.7938 -1.5526 3.0188 25 6 2.0542 -2.8494 -0.1108 26 6 1.5417 -2.0212 -1.2945 27 8 2.0085 -0.6762 -1.1652 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.1272 1.4426 -0.0914 32 1 1.7545 1.9291 0.9321 33 1 0.8458 1.7151 -1.7335 34 1 0.0756 4.2098 -2.4018 35 1 1.4481 3.7240 -3.4257 36 1 2.7590 5.6532 -2.5852 37 1 1.3868 6.1396 -1.5610 38 1 1.7222 7.0452 -6.8006 39 1 -0.4332 8.2587 -6.5492 40 1 -1.5720 8.2133 -4.3396 41 1 3.1240 -0.6135 1.3216 42 1 1.5702 -0.3034 2.1377 43 1 0.4292 -2.4036 5.2899 44 1 3.1374 -2.9520 -0.1762 45 1 1.5899 -3.8355 -0.1243 46 1 1.9141 -2.4479 -2.2258 47 1 0.4517 -2.0301 -1.3003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108291808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:00 Heat of formation + Delta-G solvation = -2.694750 kcal Electronic energy + Delta-G solvation = -28680.299810 eV Core-core repulsion = 24671.447885 eV Total energy + Delta-G solvation = -4008.851925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42412 -39.97247 -39.01180 -35.22567 -34.60620 -34.41699 -34.09645 -32.07916 -31.59828 -31.06941 -28.45256 -27.11029 -26.21464 -24.94673 -24.94404 -23.62264 -22.50469 -21.11082 -20.31455 -19.12109 -17.94365 -17.69077 -17.23775 -16.87143 -16.19551 -15.80605 -15.71081 -15.55666 -15.25317 -15.08060 -14.63194 -14.21854 -14.08204 -13.97529 -13.82719 -13.60724 -13.48399 -13.01447 -12.62489 -12.39203 -12.35073 -12.23451 -11.87325 -11.55286 -11.41354 -11.37555 -11.24778 -11.20490 -11.08022 -10.86389 -10.39680 -10.21155 -10.05577 -9.84827 -9.68616 -9.62369 -9.53206 -9.40313 -8.95410 -8.59564 -7.04786 -6.01934 -3.39190 0.45623 0.67964 2.68097 3.08580 3.27866 3.38428 3.46124 3.48120 3.62810 3.76799 4.03442 4.17237 4.46201 4.53319 4.65028 4.66160 4.73423 4.85283 4.87824 5.08819 5.19586 5.23444 5.29176 5.30245 5.35045 5.39601 5.71011 5.73704 5.75060 5.77776 5.82946 5.92210 5.97837 6.02734 6.05984 6.22360 6.25697 6.44118 6.45807 6.53073 6.59501 6.59751 6.74209 7.55562 7.61884 7.71195 7.81548 8.23594 8.26298 8.81404 9.62428 9.98666 11.13525 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.002267 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.779823 B =12348.762501 C =12818.025064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.089 3.911 3 C 0.135 3.865 4 N -0.718 5.718 5 C 0.514 3.486 6 O -0.544 6.544 7 C -0.130 4.130 8 C -0.037 4.037 9 C 0.324 3.676 10 N -0.515 5.515 11 C 0.149 3.851 12 C -0.237 4.237 13 C 0.149 3.851 14 N -0.515 5.515 15 C 0.108 3.892 16 N -0.603 5.603 17 C -0.261 4.261 18 H 0.088 0.912 19 C 0.025 3.975 20 N -0.906 5.906 21 Si 0.878 3.122 22 H -0.286 1.286 23 H -0.301 1.301 24 H -0.270 1.270 25 C 0.112 3.888 26 C 0.044 3.956 27 O -0.380 6.380 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.403 0.597 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.169 0.831 39 H 0.147 0.853 40 H 0.169 0.831 41 H 0.036 0.964 42 H 0.083 0.917 43 H 0.264 0.736 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 17.591 -21.647 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 C 0.011 3.989 4 N -0.370 5.370 5 C 0.300 3.700 6 O -0.421 6.421 7 C -0.171 4.171 8 C -0.077 4.077 9 C 0.057 3.943 10 N -0.229 5.229 11 C -0.017 4.017 12 C -0.259 4.259 13 C -0.017 4.017 14 N -0.229 5.229 15 C -0.019 4.019 16 N -0.328 5.328 17 C -0.389 4.389 18 H 0.106 0.894 19 C -0.174 4.174 20 N -0.548 5.548 21 Si 0.708 3.292 22 H -0.213 1.213 23 H -0.229 1.229 24 H -0.195 1.195 25 C -0.013 4.013 26 C -0.034 4.034 27 O -0.299 6.299 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.239 0.761 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.186 0.814 39 H 0.165 0.835 40 H 0.186 0.814 41 H 0.054 0.946 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.104 17.536 -20.265 26.822 hybrid contribution -0.148 0.710 -0.579 0.928 sum -1.252 18.246 -20.844 27.730 Atomic orbital electron populations 1.22224 0.94888 1.03887 1.01181 1.22243 0.94154 0.90486 0.88381 1.21370 0.98879 0.89285 0.89388 1.45971 1.48955 1.11011 1.31020 1.20425 0.81498 0.81976 0.86108 1.90716 1.36086 1.67874 1.47456 1.21523 1.02329 0.94963 0.98335 1.20141 1.01367 0.92526 0.93617 1.23284 0.87281 0.91305 0.92476 1.68324 1.34964 1.19305 1.00286 1.23293 0.91972 0.89017 0.97412 1.22931 0.98708 1.03706 1.00524 1.23298 0.98398 0.91827 0.88153 1.68323 1.11345 1.09067 1.34130 1.21917 0.98130 0.85899 0.95907 1.44301 1.69221 1.03806 1.15468 1.18876 1.22288 1.13059 0.84667 0.89419 1.25247 0.97916 0.98652 0.95587 1.69811 1.34262 1.47673 1.03063 0.87054 0.85173 0.79911 0.77036 1.21341 1.22902 1.19454 1.21631 0.97807 0.95654 0.86245 1.23082 0.98811 0.82732 0.98794 1.87851 1.72813 1.26000 1.43228 0.93428 0.90267 0.91552 0.90694 0.89989 0.76146 0.88576 0.88538 0.88187 0.88174 0.81433 0.83480 0.81419 0.94609 0.89921 0.92624 0.95126 0.91030 0.89665 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 7.87 37.16 0.29 -2.37 16 2 C 0.09 1.54 0.78 -90.47 -0.07 1.47 16 3 C 0.13 2.16 4.85 -4.05 -0.02 2.14 16 4 N -0.72 -9.51 5.19 -60.30 -0.31 -9.83 16 5 C 0.51 6.92 7.83 -10.99 -0.09 6.83 16 6 O -0.54 -9.30 15.98 5.56 0.09 -9.21 16 7 C -0.13 -1.30 5.68 -27.89 -0.16 -1.46 16 8 C -0.04 -0.40 4.94 -27.89 -0.14 -0.53 16 9 C 0.32 3.39 6.90 -157.19 -1.08 2.30 16 10 N -0.51 -5.12 10.33 -10.73 -0.11 -5.23 16 11 C 0.15 1.01 11.30 -17.21 -0.19 0.81 16 12 C -0.24 -1.25 10.17 -39.32 -0.40 -1.65 16 13 C 0.15 1.02 11.31 -17.20 -0.19 0.82 16 14 N -0.51 -5.15 10.33 -10.73 -0.11 -5.26 16 15 C 0.11 2.32 3.05 -3.53 -0.01 2.31 16 16 N -0.60 -13.87 2.36 -171.83 -0.40 -14.27 16 17 C -0.26 -7.04 10.10 -15.06 -0.15 -7.20 16 18 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 19 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 20 N -0.91 -27.19 13.97 55.49 0.78 -26.42 16 21 Si 0.88 22.20 24.28 -169.99 -4.13 18.07 16 22 H -0.29 -6.94 6.58 56.52 0.37 -6.57 16 23 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 24 H -0.27 -6.77 6.54 56.52 0.37 -6.40 16 25 C 0.11 2.14 6.73 -3.53 -0.02 2.11 16 26 C 0.04 0.69 6.60 37.31 0.25 0.94 16 27 O -0.38 -6.43 10.18 -35.23 -0.36 -6.79 16 28 H 0.05 0.62 6.57 -51.92 -0.34 0.28 16 29 H 0.08 1.43 6.12 -51.93 -0.32 1.12 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.40 4.57 6.99 -40.82 -0.29 4.29 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 37 H 0.10 1.13 8.10 -51.93 -0.42 0.70 16 38 H 0.17 0.60 8.06 -52.48 -0.42 0.17 16 39 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 40 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.04 0.80 6.86 -51.93 -0.36 0.44 16 42 H 0.08 1.92 4.60 -51.93 -0.24 1.68 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.31 7.96 -51.93 -0.41 0.89 16 46 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.05 0.83 6.26 -51.93 -0.33 0.50 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -34.17 375.31 -7.96 -42.13 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.97 Total: 4.01 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -2.09 Total: 7.15 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.16 Total: -61.01 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.27 Total: -16.00 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.13 Total: 18.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.17 -7.96 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108291808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.431 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds