Wall clock time and date at job start Tue Mar 31 2020 19:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.51311 * 2 1 4 4 N 1.46497 * 109.47260 * 305.09865 * 3 2 1 5 5 C 1.34781 * 120.00296 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99667 * 0.02562 * 5 4 3 7 7 C 1.50691 * 120.00420 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.47709 * 180.02562 * 7 5 4 9 9 C 1.50692 * 109.47338 * 180.02562 * 8 7 5 10 10 N 1.31805 * 119.12412 * 270.29529 * 9 8 7 11 11 C 1.32326 * 120.81625 * 180.27308 * 10 9 8 12 12 C 1.38597 * 119.10854 * 359.43473 * 11 10 9 13 13 C 1.38598 * 118.39978 * 0.28796 * 12 11 10 14 14 N 1.31794 * 119.12627 * 90.00048 * 9 8 7 15 15 C 1.53293 * 109.51301 * 120.10240 * 2 1 3 16 16 N 1.47157 * 108.38258 * 67.67024 * 15 2 1 17 17 C 1.36932 * 120.98037 * 230.51255 * 16 15 2 18 18 H 1.08002 * 120.00125 * 153.74570 * 17 16 15 19 19 C 1.38817 * 120.00436 * 333.74968 * 17 16 15 20 20 N 1.31615 * 120.00174 * 160.04074 * 19 17 16 21 21 Si 1.86796 * 119.99606 * 340.03577 * 19 17 16 22 22 H 1.48504 * 109.46790 * 91.88985 * 21 19 17 23 23 H 1.48503 * 109.47032 * 211.88979 * 21 19 17 24 24 H 1.48494 * 109.47405 * 331.88981 * 21 19 17 25 25 C 1.47151 * 118.03465 * 50.54269 * 16 15 2 26 26 C 1.53297 * 108.38204 * 309.45962 * 25 16 15 27 27 O 1.42958 * 109.22440 * 52.30244 * 26 25 16 28 28 H 1.09009 * 109.46991 * 60.00089 * 1 2 3 29 29 H 1.08996 * 109.47300 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47397 * 299.99953 * 1 2 3 31 31 H 1.09004 * 109.47104 * 185.10062 * 3 2 1 32 32 H 1.09002 * 109.47129 * 65.09969 * 3 2 1 33 33 H 0.96999 * 120.00253 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.47140 * 59.99933 * 7 5 4 35 35 H 1.09004 * 109.47490 * 300.00331 * 7 5 4 36 36 H 1.09004 * 109.46906 * 59.99998 * 8 7 5 37 37 H 1.09004 * 109.46702 * 300.00554 * 8 7 5 38 38 H 1.08003 * 120.44500 * 179.71830 * 11 10 9 39 39 H 1.07995 * 120.80445 * 180.25224 * 12 11 10 40 40 H 1.07997 * 120.45188 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.68686 * 187.39393 * 15 2 1 42 42 H 1.08998 * 109.67819 * 307.91623 * 15 2 1 43 43 H 0.96998 * 120.00203 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.68265 * 69.18076 * 25 16 15 45 45 H 1.09004 * 109.67697 * 189.74197 * 25 16 15 46 46 H 1.08997 * 109.51093 * 172.23137 * 26 25 16 47 47 H 1.09003 * 109.51343 * 292.32907 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.4556 2.1677 -1.1300 5 6 1.7643 3.4641 -1.3313 6 8 2.5272 4.0299 -0.5770 7 6 1.1617 4.2106 -2.4933 8 6 1.6728 5.6527 -2.4934 9 6 1.0697 6.3994 -3.6551 10 7 1.6973 6.3978 -4.8142 11 6 1.2006 7.0467 -5.8549 12 6 -0.0010 7.7235 -5.7167 13 6 -0.6342 7.6976 -4.4841 14 7 -0.0744 7.0317 -3.4868 15 6 2.0420 -0.7247 1.2500 16 7 1.6969 -2.1505 1.1339 17 6 1.0626 -2.8075 2.1542 18 1 0.4497 -3.6710 1.9418 19 6 1.2073 -2.3638 3.4615 20 7 0.3283 -2.7139 4.3764 21 14 2.6497 -1.2699 3.9222 22 1 2.2531 0.1548 3.7877 23 1 3.0488 -1.5423 5.3264 24 1 3.7938 -1.5526 3.0188 25 6 2.0542 -2.8494 -0.1108 26 6 1.5417 -2.0212 -1.2945 27 8 2.0085 -0.6762 -1.1652 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.1272 1.4426 -0.0914 32 1 1.7545 1.9291 0.9321 33 1 0.8458 1.7151 -1.7335 34 1 0.0756 4.2098 -2.4018 35 1 1.4481 3.7240 -3.4257 36 1 2.7590 5.6532 -2.5852 37 1 1.3868 6.1396 -1.5610 38 1 1.7222 7.0452 -6.8006 39 1 -0.4332 8.2587 -6.5492 40 1 -1.5720 8.2133 -4.3396 41 1 3.1240 -0.6135 1.3216 42 1 1.5702 -0.3034 2.1377 43 1 0.4292 -2.4036 5.2899 44 1 3.1374 -2.9520 -0.1762 45 1 1.5899 -3.8355 -0.1243 46 1 1.9141 -2.4479 -2.2258 47 1 0.4517 -2.0301 -1.3003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108291808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:59 Heat of formation + Delta-G solvation = -28.133700 kcal Electronic energy + Delta-G solvation = -28681.402926 eV Core-core repulsion = 24671.447885 eV Total energy + Delta-G solvation = -4009.955041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99559 -41.25197 -40.31030 -36.72600 -36.05078 -35.23811 -34.66418 -33.64832 -33.34111 -31.80073 -29.97590 -28.30580 -27.77724 -26.01610 -25.45184 -25.31385 -23.31560 -22.62246 -21.40369 -20.63470 -19.04947 -18.57992 -18.52851 -17.71038 -17.63719 -17.07902 -16.93569 -16.49682 -16.24919 -16.10659 -15.86551 -15.74986 -15.55385 -15.28626 -14.80292 -14.71526 -14.38430 -14.28843 -13.95632 -13.84394 -13.77919 -13.45333 -13.16990 -13.05834 -13.03704 -12.70709 -12.37350 -12.22874 -12.18110 -12.01215 -11.83113 -11.78355 -11.63313 -11.28437 -11.06143 -10.99584 -10.50205 -10.41851 -10.19726 -10.13679 -8.95627 -8.20892 -5.52836 -0.07571 0.18137 1.24194 1.37102 1.43522 1.61519 2.06627 2.35376 2.66485 2.79763 2.93269 3.00847 3.22053 3.26679 3.69331 3.78449 3.79604 3.84798 3.90134 4.07582 4.11380 4.23090 4.24998 4.29794 4.41177 4.44283 4.49225 4.52742 4.60823 4.62243 4.64549 4.71529 4.76943 4.82361 4.89003 5.02121 5.02514 5.05520 5.12540 5.33794 5.36898 5.48962 5.77780 6.07798 6.08965 6.23988 6.51716 6.80862 7.13988 7.21174 7.53485 7.94915 8.98316 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.002267 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.779823 B =12348.762501 C =12818.025064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.102 3.898 3 C 0.141 3.859 4 N -0.707 5.707 5 C 0.515 3.485 6 O -0.583 6.583 7 C -0.115 4.115 8 C -0.033 4.033 9 C 0.305 3.695 10 N -0.540 5.540 11 C 0.136 3.864 12 C -0.218 4.218 13 C 0.135 3.865 14 N -0.541 5.541 15 C 0.102 3.898 16 N -0.616 5.616 17 C -0.241 4.241 18 H 0.063 0.937 19 C -0.028 4.028 20 N -0.951 5.951 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.310 1.310 24 H -0.267 1.267 25 C 0.104 3.896 26 C 0.050 3.950 27 O -0.376 6.376 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.415 0.585 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.198 0.802 39 H 0.186 0.814 40 H 0.197 0.803 41 H 0.029 0.971 42 H 0.062 0.938 43 H 0.262 0.738 44 H 0.033 0.967 45 H 0.075 0.925 46 H 0.125 0.875 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 19.256 -25.397 31.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 C 0.016 3.984 4 N -0.360 5.360 5 C 0.302 3.698 6 O -0.464 6.464 7 C -0.156 4.156 8 C -0.072 4.072 9 C 0.038 3.962 10 N -0.255 5.255 11 C -0.029 4.029 12 C -0.239 4.239 13 C -0.029 4.029 14 N -0.256 5.256 15 C -0.024 4.024 16 N -0.341 5.341 17 C -0.370 4.370 18 H 0.081 0.919 19 C -0.223 4.223 20 N -0.597 5.597 21 Si 0.760 3.240 22 H -0.201 1.201 23 H -0.238 1.238 24 H -0.192 1.192 25 C -0.021 4.021 26 C -0.027 4.027 27 O -0.296 6.296 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.253 0.747 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.215 0.785 39 H 0.203 0.797 40 H 0.214 0.786 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.142 0.858 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.574 19.211 -24.094 30.855 hybrid contribution -0.036 0.186 0.430 0.470 sum -1.610 19.397 -23.663 30.640 Atomic orbital electron populations 1.22163 0.93814 1.03077 1.02547 1.21959 0.94753 0.90634 0.86620 1.21110 0.98408 0.88676 0.90190 1.45824 1.48881 1.10961 1.30363 1.21009 0.80679 0.81717 0.86346 1.90703 1.37938 1.68654 1.49074 1.21446 1.02882 0.94112 0.97114 1.19986 1.00619 0.93012 0.93624 1.23035 0.88035 0.92538 0.92616 1.68285 1.35714 1.20627 1.00880 1.23908 0.92805 0.88536 0.97649 1.23329 0.97554 1.02122 1.00925 1.23904 0.99390 0.91430 0.88220 1.68282 1.11548 1.10017 1.35738 1.21921 0.97563 0.85475 0.97451 1.44408 1.69161 1.04738 1.15801 1.18833 1.20772 1.11766 0.85632 0.91911 1.25757 0.99883 1.00830 0.95857 1.69917 1.36076 1.50310 1.03360 0.86187 0.82531 0.79236 0.75997 1.20119 1.23845 1.19233 1.21884 0.98123 0.96368 0.85676 1.23151 0.99288 0.81590 0.98691 1.87874 1.72935 1.26453 1.42303 0.89776 0.92090 0.92528 0.91651 0.90843 0.74680 0.86882 0.86879 0.89539 0.89593 0.78537 0.79670 0.78615 0.95326 0.92028 0.92901 0.94878 0.90689 0.85770 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 7.87 71.98 0.57 -4.29 16 2 C 0.10 3.37 0.78 -10.70 -0.01 3.36 16 3 C 0.14 4.36 4.85 86.38 0.42 4.78 16 4 N -0.71 -17.36 5.19 -463.07 -2.41 -19.76 16 5 C 0.51 13.27 7.83 87.65 0.69 13.96 16 6 O -0.58 -20.00 15.98 -3.03 -0.05 -20.04 16 7 C -0.11 -2.12 5.68 29.85 0.17 -1.95 16 8 C -0.03 -0.70 4.94 29.85 0.15 -0.55 16 9 C 0.31 6.13 6.90 138.74 0.96 7.09 16 10 N -0.54 -10.00 10.33 -187.85 -1.94 -11.94 16 11 C 0.14 1.47 11.30 84.70 0.96 2.43 16 12 C -0.22 -1.55 10.17 22.44 0.23 -1.32 16 13 C 0.14 1.50 11.31 84.70 0.96 2.45 16 14 N -0.54 -10.12 10.33 -187.85 -1.94 -12.06 16 15 C 0.10 4.33 3.05 86.35 0.26 4.59 16 16 N -0.62 -28.09 2.36 -697.54 -1.64 -29.73 16 17 C -0.24 -13.20 10.10 84.04 0.85 -12.35 16 18 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 19 C -0.03 -1.61 5.26 84.86 0.45 -1.17 16 20 N -0.95 -58.84 13.97 21.65 0.30 -58.54 16 21 Si 0.93 46.94 24.28 68.60 1.67 48.60 16 22 H -0.27 -13.16 6.58 99.48 0.65 -12.50 16 23 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 24 H -0.27 -13.20 6.54 99.48 0.65 -12.55 16 25 C 0.10 3.79 6.73 86.35 0.58 4.37 16 26 C 0.05 1.42 6.60 72.08 0.48 1.90 16 27 O -0.38 -11.66 10.18 -148.98 -1.52 -13.17 16 28 H 0.08 1.93 6.57 -2.38 -0.02 1.92 16 29 H 0.06 2.11 6.12 -2.39 -0.01 2.10 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.42 8.08 6.99 -92.71 -0.65 7.43 16 34 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 2.00 8.10 -2.39 -0.02 1.98 16 37 H 0.09 2.00 8.10 -2.39 -0.02 1.98 16 38 H 0.20 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.19 -0.18 8.06 -2.91 -0.02 -0.20 16 40 H 0.20 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 42 H 0.06 2.88 4.60 -2.39 -0.01 2.87 16 43 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.07 2.65 7.96 -2.39 -0.02 2.63 16 46 H 0.12 2.65 8.14 -2.39 -0.02 2.64 16 47 H 0.06 1.66 6.26 -2.39 -0.01 1.65 16 Total: -1.00 -76.84 375.31 0.40 -76.44 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.23 Total: 16.90 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 7.70 Total: 23.31 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -7.63 Total: -132.03 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.56 Total: -33.22 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.67 Total: 48.60 kcal Total: -76.84 0.40 -76.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108291808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.303 kcal (2) G-P(sol) polarization free energy of solvation -76.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds