Wall clock time and date at job start Tue Mar 31 2020 19:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.51080 * 2 1 4 4 N 1.46500 * 109.47037 * 60.10479 * 3 2 1 5 5 C 1.34782 * 119.99730 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00097 * 0.02562 * 5 4 3 7 7 C 1.47427 * 119.99590 * 180.02562 * 5 4 3 8 8 C 1.38047 * 126.41824 * 359.68420 * 7 5 4 9 9 N 1.34259 * 107.41973 * 179.87676 * 8 7 5 10 10 H 0.97005 * 125.75676 * 180.14873 * 9 8 7 11 11 N 1.39935 * 108.49014 * 0.39368 * 9 8 7 12 12 C 1.30454 * 108.89860 * 359.75276 * 11 9 8 13 13 C 1.50692 * 125.98759 * 179.97438 * 12 11 9 14 14 C 1.52999 * 117.50250 * 8.79525 * 13 12 11 15 15 C 1.53002 * 117.50257 * 300.13088 * 13 12 11 16 16 C 1.53291 * 109.50803 * 239.85218 * 2 1 3 17 17 N 1.47153 * 108.38747 * 292.37459 * 16 2 1 18 18 C 1.36939 * 120.98178 * 129.48521 * 17 16 2 19 19 H 1.08003 * 119.99655 * 206.21714 * 18 17 16 20 20 C 1.38813 * 119.99746 * 26.22228 * 18 17 16 21 21 N 1.31617 * 120.00396 * 16.91734 * 20 18 17 22 22 Si 1.86802 * 119.99573 * 196.91502 * 20 18 17 23 23 H 1.48495 * 109.47212 * 59.99919 * 22 20 18 24 24 H 1.48498 * 109.47076 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47489 * 299.99931 * 22 20 18 26 26 C 1.47157 * 118.03376 * 309.47250 * 17 16 2 27 27 C 1.53290 * 108.38478 * 50.53312 * 26 17 16 28 28 O 1.42958 * 109.51241 * 120.10728 * 2 1 3 29 29 H 1.09005 * 109.46993 * 299.89861 * 1 2 3 30 30 H 1.09002 * 109.47544 * 59.89526 * 1 2 3 31 31 H 1.08998 * 109.47595 * 179.89567 * 1 2 3 32 32 H 1.09002 * 109.46877 * 180.10145 * 3 2 1 33 33 H 1.09003 * 109.47529 * 300.10095 * 3 2 1 34 34 H 0.96999 * 120.00371 * 0.02562 * 4 3 2 35 35 H 1.08005 * 126.28860 * 0.02948 * 8 7 5 36 36 H 1.09000 * 115.54655 * 154.45830 * 13 12 11 37 37 H 1.09001 * 117.49846 * 359.97438 * 14 13 12 38 38 H 1.08998 * 117.50419 * 145.02077 * 14 13 12 39 39 H 1.09001 * 117.49669 * 214.98200 * 15 13 12 40 40 H 1.08998 * 117.49593 * 359.97374 * 15 13 12 41 41 H 1.09000 * 109.68537 * 52.10241 * 16 2 1 42 42 H 1.09000 * 109.68023 * 172.62041 * 16 2 1 43 43 H 0.96988 * 119.99920 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.67989 * 290.80124 * 26 17 16 45 45 H 1.09003 * 109.67820 * 170.25108 * 26 17 16 46 46 H 1.08997 * 109.51837 * 67.61985 * 27 26 17 47 47 H 1.08999 * 109.51169 * 187.72416 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5552 2.1323 1.1974 5 6 1.8825 3.4222 1.4112 6 8 2.5806 4.0132 0.6099 7 6 1.3941 4.1166 2.6165 8 6 0.5936 3.5789 3.6043 9 7 0.3834 4.5394 4.5185 10 1 -0.1434 4.4462 5.3277 11 7 1.0478 5.6992 4.1044 12 6 1.6525 5.4590 2.9737 13 6 2.4809 6.4411 2.1864 14 6 2.8060 7.7816 2.8484 15 6 1.7919 7.7190 1.7033 16 6 2.0419 -0.7257 -1.2495 17 7 1.6959 -2.1512 -1.1328 18 6 1.0614 -2.8083 -2.1530 19 1 0.4483 -3.6717 -1.9404 20 6 1.2064 -2.3649 -3.4604 21 7 2.1885 -1.5461 -3.7726 22 14 0.0075 -2.9302 -4.7766 23 1 -1.3681 -2.5113 -4.4061 24 1 0.3777 -2.3194 -6.0786 25 1 0.0602 -4.4098 -4.8918 26 6 2.0521 -2.8497 0.1125 27 6 1.5395 -2.0205 1.2955 28 8 2.0075 -0.6759 1.1657 29 1 -0.3633 0.5123 0.8909 30 1 -0.3634 0.5155 -0.8890 31 1 -0.3634 -1.0276 -0.0019 32 1 3.1310 1.4413 -0.0018 33 1 1.6766 1.9568 -0.8891 34 1 0.9986 1.6609 1.8368 35 1 0.2093 2.5700 3.6371 36 1 3.2398 6.0027 1.5384 37 1 2.4202 7.9533 3.8533 38 1 3.7785 8.2254 2.6355 39 1 2.0979 8.1215 0.7376 40 1 0.7393 7.8491 1.9547 41 1 1.5703 -0.3049 -2.1375 42 1 3.1239 -0.6148 -1.3210 43 1 2.2894 -1.2360 -4.6860 44 1 3.1351 -2.9532 0.1784 45 1 1.5871 -3.8354 0.1263 46 1 0.4496 -2.0278 1.3003 47 1 1.9105 -2.4475 2.2273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108318322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:15 Heat of formation + Delta-G solvation = 22.880464 kcal Electronic energy + Delta-G solvation = -29337.151709 eV Core-core repulsion = 25329.408808 eV Total energy + Delta-G solvation = -4007.742901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46059 -40.89325 -39.76615 -37.98783 -36.47500 -35.83173 -33.33306 -33.16424 -32.41023 -31.25602 -29.53270 -28.00772 -27.20394 -25.00705 -24.95498 -24.04639 -23.24771 -22.74934 -21.13505 -20.45600 -20.21296 -19.47841 -18.83993 -17.60951 -17.34042 -16.82868 -16.57023 -16.53218 -16.16360 -16.00324 -15.65038 -15.54715 -15.34003 -15.25808 -15.08459 -14.62973 -14.42891 -14.01387 -13.85967 -13.36347 -13.15295 -12.92410 -12.88528 -12.73069 -12.48569 -12.42482 -12.41099 -12.17278 -12.15907 -11.93968 -11.91438 -11.80711 -11.38915 -11.10342 -10.83160 -10.68896 -10.46216 -10.28070 -10.13929 -9.70286 -8.69137 -7.87249 -5.33992 0.55118 1.00774 1.47795 1.49720 1.56635 1.78142 2.26111 2.43979 2.50887 2.84043 3.04563 3.27420 3.38685 3.54484 3.61792 3.95310 4.03064 4.05469 4.08924 4.15895 4.16098 4.34197 4.40453 4.47177 4.50964 4.63780 4.66636 4.72421 4.76355 4.76525 4.85632 4.94968 5.01803 5.09182 5.16867 5.21091 5.25001 5.26336 5.34284 5.40811 5.47647 5.57578 5.64128 6.26990 6.31956 6.41402 6.48300 6.72562 7.09491 7.36842 7.79183 8.32912 9.18101 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.002697 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.419418 B =10377.955795 C =11156.577415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.096 3.904 3 C 0.153 3.847 4 N -0.701 5.701 5 C 0.588 3.412 6 O -0.585 6.585 7 C -0.314 4.314 8 C 0.139 3.861 9 N -0.443 5.443 10 H 0.463 0.537 11 N -0.318 5.318 12 C 0.151 3.849 13 C -0.108 4.108 14 C -0.153 4.153 15 C -0.154 4.154 16 C 0.167 3.833 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.074 0.926 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.276 1.276 26 C 0.100 3.900 27 C 0.053 3.947 28 O -0.383 6.383 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.412 0.588 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.066 0.934 42 H -0.010 1.010 43 H 0.250 0.750 44 H 0.010 0.990 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 11.180 19.431 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.055 3.945 3 C 0.028 3.972 4 N -0.353 5.353 5 C 0.377 3.623 6 O -0.467 6.467 7 C -0.329 4.329 8 C -0.016 4.016 9 N -0.149 5.149 10 H 0.312 0.688 11 N -0.140 5.140 12 C -0.015 4.015 13 C -0.128 4.128 14 C -0.190 4.190 15 C -0.192 4.192 16 C 0.040 3.960 17 N -0.331 5.331 18 C -0.389 4.389 19 H 0.092 0.908 20 C -0.245 4.245 21 N -0.582 5.582 22 Si 0.794 3.206 23 H -0.200 1.200 24 H -0.225 1.225 25 H -0.202 1.202 26 C -0.025 4.025 27 C -0.024 4.024 28 O -0.303 6.303 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.250 0.750 35 H 0.248 0.752 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.008 0.992 43 H 0.059 0.941 44 H 0.028 0.972 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.436 12.557 19.767 24.286 hybrid contribution -0.442 -1.593 -1.563 2.275 sum -6.877 10.965 18.204 22.336 Atomic orbital electron populations 1.22115 0.93809 1.02836 1.02261 1.22157 0.94709 0.90411 0.87266 1.20983 0.98636 0.89411 0.88212 1.45519 1.53734 1.11045 1.25033 1.17589 0.79018 0.81090 0.84601 1.90719 1.40554 1.67132 1.48267 1.20179 1.14999 0.96314 1.01424 1.23715 0.93740 0.96719 0.87395 1.46089 1.40271 1.07366 1.21178 0.68849 1.77031 1.15485 1.06858 1.14674 1.21556 0.94943 0.93075 0.91970 1.20489 1.01951 0.87733 1.02638 1.23064 1.01014 0.96960 0.97961 1.23014 0.98509 0.97933 0.99789 1.21052 0.95301 0.84370 0.95241 1.44250 1.68615 1.05569 1.14660 1.19469 1.21248 1.12089 0.86085 0.90847 1.25786 0.98779 1.00793 0.99185 1.70175 1.31025 1.38508 1.18510 0.85368 0.79203 0.77949 0.78102 1.20018 1.22479 1.20178 1.21837 0.96953 0.96416 0.87304 1.23100 0.99191 0.81773 0.98327 1.87826 1.73293 1.26392 1.42757 0.89970 0.92841 0.91994 0.92984 0.91144 0.75030 0.75171 0.86494 0.88089 0.86829 0.87226 0.88865 0.91595 0.99172 0.94101 0.97182 0.91038 0.91866 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 7.91 71.98 0.57 -4.10 16 2 C 0.10 3.39 0.76 -10.70 -0.01 3.38 16 3 C 0.15 5.21 4.82 86.38 0.42 5.63 16 4 N -0.70 -18.75 5.14 -466.36 -2.40 -21.15 16 5 C 0.59 17.69 7.81 86.66 0.68 18.37 16 6 O -0.59 -22.47 14.99 -4.03 -0.06 -22.53 16 7 C -0.31 -7.47 6.13 -20.15 -0.12 -7.59 16 8 C 0.14 1.86 11.52 84.28 0.97 2.83 16 9 N -0.44 -5.66 7.29 -56.31 -0.41 -6.07 16 10 H 0.46 2.05 8.96 -213.42 -1.91 0.13 16 11 N -0.32 -6.80 12.22 -46.68 -0.57 -7.37 16 12 C 0.15 3.81 6.79 43.51 0.30 4.11 16 13 C -0.11 -2.70 5.65 -11.54 -0.07 -2.77 16 14 C -0.15 -2.91 10.14 30.62 0.31 -2.60 16 15 C -0.15 -3.15 10.24 30.62 0.31 -2.84 16 16 C 0.17 7.92 4.11 86.35 0.36 8.28 16 17 N -0.61 -29.24 2.57 -697.54 -1.79 -31.03 16 18 C -0.26 -13.63 9.65 84.03 0.81 -12.82 16 19 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 20 C -0.05 -2.72 4.95 84.86 0.42 -2.30 16 21 N -0.94 -54.99 11.14 21.65 0.24 -54.74 16 22 Si 0.97 43.79 29.59 68.60 2.03 45.82 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 26 C 0.10 3.91 6.73 86.35 0.58 4.49 16 27 C 0.05 1.59 6.60 72.08 0.48 2.06 16 28 O -0.38 -12.64 9.97 -148.98 -1.49 -14.12 16 29 H 0.08 1.83 6.87 -2.38 -0.02 1.81 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.06 6.11 -2.39 -0.01 2.05 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.41 8.19 6.13 -92.71 -0.57 7.62 16 35 H 0.23 0.84 7.46 -2.91 -0.02 0.81 16 36 H 0.12 3.46 6.73 -2.39 -0.02 3.44 16 37 H 0.10 1.90 7.90 -2.39 -0.02 1.88 16 38 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 3.52 6.14 -2.39 -0.01 3.50 16 42 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H 0.25 14.37 8.31 -92.72 -0.77 13.60 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 45 H 0.07 2.60 7.96 -2.39 -0.02 2.58 16 46 H 0.06 1.73 6.25 -2.39 -0.01 1.72 16 47 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -75.73 378.03 0.09 -75.64 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -1.47 Total: 21.44 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.00 Total: 14.11 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -4.93 Total: -120.36 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -1.55 Total: -36.65 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -75.73 0.09 -75.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108318322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.516 kcal (2) G-P(sol) polarization free energy of solvation -75.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds