Wall clock time and date at job start Tue Mar 31 2020 19:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.51185 * 2 1 4 4 N 1.46494 * 109.47496 * 60.09828 * 3 2 1 5 5 C 1.34773 * 120.00181 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00130 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.99865 * 180.02562 * 5 4 3 8 8 C 1.52999 * 109.46856 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.46937 * 180.02562 * 8 7 5 10 10 C 1.38392 * 120.00199 * 125.00034 * 9 8 7 11 11 N 1.32120 * 119.99300 * 179.97438 * 10 9 8 12 12 C 1.32154 * 120.00592 * 359.97438 * 11 10 9 13 13 C 1.38347 * 119.99638 * 359.97438 * 12 11 10 14 14 N 1.32119 * 119.99803 * 304.71974 * 9 8 7 15 15 C 1.53292 * 109.55709 * 239.87245 * 2 1 3 16 16 N 1.47233 * 108.40299 * 292.35711 * 15 2 1 17 17 C 1.36938 * 121.03150 * 129.45891 * 16 15 2 18 18 H 1.07995 * 120.00241 * 206.17702 * 17 16 15 19 19 C 1.38816 * 119.99718 * 26.17954 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.89599 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.89669 * 19 17 16 22 22 H 1.48504 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47372 * 119.99555 * 21 19 17 24 24 H 1.48500 * 109.47051 * 240.00016 * 21 19 17 25 25 C 1.47151 * 117.98790 * 309.48233 * 16 15 2 26 26 C 1.53300 * 108.41429 * 50.51917 * 25 16 15 27 27 O 1.42962 * 109.22183 * 307.68047 * 26 25 16 28 28 H 1.09005 * 109.47540 * 299.90214 * 1 2 3 29 29 H 1.09009 * 109.47494 * 59.90123 * 1 2 3 30 30 H 1.09002 * 109.47512 * 179.89846 * 1 2 3 31 31 H 1.09004 * 109.47099 * 180.10558 * 3 2 1 32 32 H 1.09002 * 109.47319 * 300.09750 * 3 2 1 33 33 H 0.97006 * 119.99601 * 0.02562 * 4 3 2 34 34 H 1.08995 * 109.47039 * 300.00259 * 7 5 4 35 35 H 1.08995 * 109.46790 * 60.00559 * 7 5 4 36 36 H 1.09005 * 109.47113 * 299.99822 * 8 7 5 37 37 H 1.08991 * 109.47321 * 60.00033 * 8 7 5 38 38 H 1.08002 * 119.99974 * 359.95166 * 10 9 8 39 39 H 1.07998 * 120.00088 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.99453 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.68446 * 52.07217 * 15 2 1 42 42 H 1.08991 * 109.68807 * 172.63033 * 15 2 1 43 43 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.67883 * 290.77953 * 25 16 15 45 45 H 1.08994 * 109.68171 * 170.26092 * 25 16 15 46 46 H 1.09004 * 109.51066 * 67.60375 * 26 25 16 47 47 H 1.09001 * 109.51236 * 187.70563 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 7 1.5551 2.1325 1.1973 5 6 1.8824 3.4223 1.4110 6 8 2.5788 4.0116 0.6119 7 6 1.3830 4.1322 2.6430 8 6 1.8940 5.5743 2.6429 9 6 1.3951 6.2841 3.8752 10 6 2.2926 6.8985 4.7309 11 7 1.8551 7.5211 5.8109 12 6 0.5605 7.5576 6.0738 13 6 -0.3367 6.9443 5.2178 14 7 0.1005 6.3245 4.1357 15 6 2.0431 -0.7250 -1.2493 16 7 1.6979 -2.1516 -1.1335 17 6 1.0642 -2.8097 -2.1536 18 1 0.4526 -3.6740 -1.9410 19 6 1.2079 -2.3657 -3.4610 20 7 2.1882 -1.5450 -3.7733 21 14 0.0098 -2.9332 -4.7771 22 1 -0.9931 -3.8466 -4.1728 23 1 -0.6809 -1.7545 -5.3592 24 1 0.7512 -3.6501 -5.8455 25 6 2.0541 -2.8494 0.1121 26 6 1.5405 -2.0208 1.2952 27 8 2.0075 -0.6758 1.1658 28 1 -0.3634 0.5123 0.8909 29 1 -0.3634 0.5154 -0.8891 30 1 -0.3634 -1.0277 -0.0018 31 1 3.1310 1.4414 -0.0019 32 1 1.6766 1.9568 -0.8891 33 1 0.9984 1.6609 1.8366 34 1 0.2931 4.1332 2.6450 35 1 1.7476 3.6173 3.5318 36 1 2.9840 5.5736 2.6407 37 1 1.5292 6.0890 1.7541 38 1 3.3506 6.8687 4.5160 39 1 0.2028 8.0670 6.9565 40 1 -1.3948 6.9746 5.4324 41 1 1.5715 -0.3045 -2.1376 42 1 3.1250 -0.6139 -1.3200 43 1 2.2884 -1.2345 -4.6868 44 1 3.1373 -2.9520 0.1785 45 1 1.5904 -3.8357 0.1259 46 1 0.4505 -2.0289 1.2994 47 1 1.9114 -2.4477 2.2270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108325918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:38 Heat of formation + Delta-G solvation = -12.510968 kcal Electronic energy + Delta-G solvation = -28554.353072 eV Core-core repulsion = 24545.075483 eV Total energy + Delta-G solvation = -4009.277588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.45542 -39.80190 -38.79787 -35.34623 -34.87037 -34.33450 -33.79128 -31.87042 -31.27834 -30.62844 -27.97367 -26.93688 -26.10882 -25.15301 -24.65712 -23.25332 -22.42939 -21.17963 -20.18929 -18.71497 -17.96569 -17.43226 -17.22640 -16.98583 -16.07902 -15.90612 -15.59715 -15.47953 -15.12427 -14.88549 -14.38824 -14.15727 -13.98826 -13.62631 -13.56861 -13.52208 -13.04667 -12.80832 -12.63313 -12.48989 -12.25282 -11.93977 -11.91864 -11.61180 -11.57566 -11.28865 -11.21033 -11.03775 -10.84909 -10.68043 -10.33167 -10.25123 -10.02636 -9.82768 -9.59458 -9.51567 -9.40766 -9.06338 -8.81447 -8.56227 -6.76444 -5.86627 -3.29937 0.38621 0.75890 2.77016 3.22226 3.31917 3.38306 3.40425 3.41824 3.68552 3.90321 4.10238 4.22943 4.41018 4.42144 4.65686 4.76437 4.88753 5.01844 5.11085 5.12218 5.17668 5.32185 5.40036 5.46695 5.50893 5.66709 5.70980 5.79283 5.89969 5.92191 6.00718 6.02032 6.08843 6.12357 6.29990 6.44633 6.56447 6.67767 6.74608 6.80486 6.89494 7.05197 7.40602 7.44611 7.67626 7.69218 7.85954 8.30553 8.36582 9.08561 9.71732 10.28898 11.21370 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023302 B = 0.002104 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.343745 B =13305.178556 C =13632.500008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 C 0.139 3.861 4 N -0.717 5.717 5 C 0.510 3.490 6 O -0.547 6.547 7 C -0.132 4.132 8 C -0.051 4.051 9 C 0.087 3.913 10 C 0.053 3.947 11 N -0.437 5.437 12 C 0.038 3.962 13 C 0.055 3.945 14 N -0.436 5.436 15 C 0.159 3.841 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.402 0.598 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.097 0.903 42 H 0.029 0.971 43 H 0.255 0.745 44 H 0.025 0.975 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 13.939 18.433 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.016 3.984 4 N -0.368 5.368 5 C 0.295 3.705 6 O -0.425 6.425 7 C -0.172 4.172 8 C -0.090 4.090 9 C -0.053 4.053 10 C -0.107 4.107 11 N -0.152 5.152 12 C -0.122 4.122 13 C -0.105 4.105 14 N -0.151 5.151 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.304 6.304 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.237 0.763 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.188 0.812 39 H 0.186 0.814 40 H 0.187 0.813 41 H 0.115 0.885 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.834 14.481 17.802 23.266 hybrid contribution -1.061 -0.712 -0.537 1.386 sum -4.894 13.769 17.265 22.619 Atomic orbital electron populations 1.22205 0.95756 1.03210 1.00741 1.22549 0.93557 0.90709 0.89477 1.21354 0.99870 0.89900 0.87316 1.45993 1.53363 1.11676 1.25766 1.20533 0.80431 0.81989 0.87499 1.90707 1.38306 1.66169 1.47357 1.21546 1.03485 0.95165 0.97021 1.20270 1.01666 0.93528 0.93521 1.22390 0.89920 0.95751 0.97282 1.23704 1.01885 0.94430 0.90648 1.68458 1.16272 1.13478 1.16943 1.23770 0.89673 0.98190 1.00542 1.23811 1.02038 0.93949 0.90736 1.68285 1.15620 1.14042 1.17198 1.21308 0.97819 0.83920 0.93692 1.44023 1.68690 1.04946 1.13782 1.19195 1.21659 1.12055 0.85370 0.91369 1.25044 0.97326 1.00113 0.97108 1.70020 1.29274 1.36761 1.18463 0.86224 0.80727 0.78035 0.81795 1.20260 1.21450 1.21656 1.21595 0.97544 0.95230 0.87377 1.23032 0.98299 0.83133 0.98713 1.87808 1.72974 1.25800 1.43805 0.93921 0.91896 0.90843 0.90891 0.90101 0.76296 0.88007 0.89110 0.88810 0.88543 0.81205 0.81435 0.81300 0.88534 0.95254 0.93463 0.95670 0.92066 0.93397 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 7.92 37.15 0.29 -2.41 16 2 C 0.08 1.42 0.76 -90.47 -0.07 1.35 16 3 C 0.14 2.34 4.82 -4.04 -0.02 2.32 16 4 N -0.72 -9.83 5.15 -60.29 -0.31 -10.14 16 5 C 0.51 6.89 7.83 -10.98 -0.09 6.80 16 6 O -0.55 -9.38 15.98 5.56 0.09 -9.29 16 7 C -0.13 -1.27 5.57 -27.88 -0.16 -1.42 16 8 C -0.05 -0.47 4.92 -27.88 -0.14 -0.61 16 9 C 0.09 0.78 6.17 -82.41 -0.51 0.27 16 10 C 0.05 0.45 10.85 -17.37 -0.19 0.26 16 11 N -0.44 -3.96 10.50 -13.06 -0.14 -4.10 16 12 C 0.04 0.26 11.23 -17.37 -0.20 0.06 16 13 C 0.05 0.38 11.22 -17.38 -0.20 0.18 16 14 N -0.44 -4.07 10.06 -9.29 -0.09 -4.17 16 15 C 0.16 3.66 4.12 -3.49 -0.01 3.65 16 16 N -0.59 -14.21 2.57 -171.77 -0.44 -14.65 16 17 C -0.25 -6.68 9.65 -15.06 -0.15 -6.82 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 20 N -0.90 -25.50 11.14 55.49 0.62 -24.88 16 21 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.11 2.20 6.73 -3.53 -0.02 2.18 16 26 C 0.05 0.78 6.60 37.31 0.25 1.03 16 27 O -0.38 -6.90 9.97 -35.23 -0.35 -7.25 16 28 H 0.04 0.59 6.87 -51.93 -0.36 0.23 16 29 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 30 H 0.07 1.35 6.12 -51.93 -0.32 1.03 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.40 4.83 7.20 -40.82 -0.29 4.53 16 34 H 0.10 0.93 7.97 -51.93 -0.41 0.51 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.80 7.84 -51.93 -0.41 0.39 16 37 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.17 1.04 7.95 -52.49 -0.42 0.62 16 39 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 41 H 0.10 2.46 6.14 -51.93 -0.32 2.14 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 46 H 0.05 0.78 6.25 -51.93 -0.32 0.46 16 47 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -32.72 381.32 -8.23 -40.95 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.04 Total: 4.84 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -1.28 Total: 6.83 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.37 Total: -57.94 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.26 Total: -16.54 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.72 -8.23 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108325918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.439 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds