Wall clock time and date at job start Tue Mar 31 2020 19:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.51185 * 2 1 4 4 N 1.46494 * 109.47496 * 60.09828 * 3 2 1 5 5 C 1.34773 * 120.00181 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00130 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.99865 * 180.02562 * 5 4 3 8 8 C 1.52999 * 109.46856 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.46937 * 180.02562 * 8 7 5 10 10 C 1.38392 * 120.00199 * 125.00034 * 9 8 7 11 11 N 1.32120 * 119.99300 * 179.97438 * 10 9 8 12 12 C 1.32154 * 120.00592 * 359.97438 * 11 10 9 13 13 C 1.38347 * 119.99638 * 359.97438 * 12 11 10 14 14 N 1.32119 * 119.99803 * 304.71974 * 9 8 7 15 15 C 1.53292 * 109.55709 * 239.87245 * 2 1 3 16 16 N 1.47233 * 108.40299 * 292.35711 * 15 2 1 17 17 C 1.36938 * 121.03150 * 129.45891 * 16 15 2 18 18 H 1.07995 * 120.00241 * 206.17702 * 17 16 15 19 19 C 1.38816 * 119.99718 * 26.17954 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.89599 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.89669 * 19 17 16 22 22 H 1.48504 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47372 * 119.99555 * 21 19 17 24 24 H 1.48500 * 109.47051 * 240.00016 * 21 19 17 25 25 C 1.47151 * 117.98790 * 309.48233 * 16 15 2 26 26 C 1.53300 * 108.41429 * 50.51917 * 25 16 15 27 27 O 1.42962 * 109.22183 * 307.68047 * 26 25 16 28 28 H 1.09005 * 109.47540 * 299.90214 * 1 2 3 29 29 H 1.09009 * 109.47494 * 59.90123 * 1 2 3 30 30 H 1.09002 * 109.47512 * 179.89846 * 1 2 3 31 31 H 1.09004 * 109.47099 * 180.10558 * 3 2 1 32 32 H 1.09002 * 109.47319 * 300.09750 * 3 2 1 33 33 H 0.97006 * 119.99601 * 0.02562 * 4 3 2 34 34 H 1.08995 * 109.47039 * 300.00259 * 7 5 4 35 35 H 1.08995 * 109.46790 * 60.00559 * 7 5 4 36 36 H 1.09005 * 109.47113 * 299.99822 * 8 7 5 37 37 H 1.08991 * 109.47321 * 60.00033 * 8 7 5 38 38 H 1.08002 * 119.99974 * 359.95166 * 10 9 8 39 39 H 1.07998 * 120.00088 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.99453 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.68446 * 52.07217 * 15 2 1 42 42 H 1.08991 * 109.68807 * 172.63033 * 15 2 1 43 43 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.67883 * 290.77953 * 25 16 15 45 45 H 1.08994 * 109.68171 * 170.26092 * 25 16 15 46 46 H 1.09004 * 109.51066 * 67.60375 * 26 25 16 47 47 H 1.09001 * 109.51236 * 187.70563 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 7 1.5551 2.1325 1.1973 5 6 1.8824 3.4223 1.4110 6 8 2.5788 4.0116 0.6119 7 6 1.3830 4.1322 2.6430 8 6 1.8940 5.5743 2.6429 9 6 1.3951 6.2841 3.8752 10 6 2.2926 6.8985 4.7309 11 7 1.8551 7.5211 5.8109 12 6 0.5605 7.5576 6.0738 13 6 -0.3367 6.9443 5.2178 14 7 0.1005 6.3245 4.1357 15 6 2.0431 -0.7250 -1.2493 16 7 1.6979 -2.1516 -1.1335 17 6 1.0642 -2.8097 -2.1536 18 1 0.4526 -3.6740 -1.9410 19 6 1.2079 -2.3657 -3.4610 20 7 2.1882 -1.5450 -3.7733 21 14 0.0098 -2.9332 -4.7771 22 1 -0.9931 -3.8466 -4.1728 23 1 -0.6809 -1.7545 -5.3592 24 1 0.7512 -3.6501 -5.8455 25 6 2.0541 -2.8494 0.1121 26 6 1.5405 -2.0208 1.2952 27 8 2.0075 -0.6758 1.1658 28 1 -0.3634 0.5123 0.8909 29 1 -0.3634 0.5154 -0.8891 30 1 -0.3634 -1.0277 -0.0018 31 1 3.1310 1.4414 -0.0019 32 1 1.6766 1.9568 -0.8891 33 1 0.9984 1.6609 1.8366 34 1 0.2931 4.1332 2.6450 35 1 1.7476 3.6173 3.5318 36 1 2.9840 5.5736 2.6407 37 1 1.5292 6.0890 1.7541 38 1 3.3506 6.8687 4.5160 39 1 0.2028 8.0670 6.9565 40 1 -1.3948 6.9746 5.4324 41 1 1.5715 -0.3045 -2.1376 42 1 3.1250 -0.6139 -1.3200 43 1 2.2884 -1.2345 -4.6868 44 1 3.1373 -2.9520 0.1785 45 1 1.5904 -3.8357 0.1259 46 1 0.4505 -2.0289 1.2994 47 1 1.9114 -2.4477 2.2270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108325918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:37 Heat of formation + Delta-G solvation = -35.867581 kcal Electronic energy + Delta-G solvation = -28555.365890 eV Core-core repulsion = 24545.075483 eV Total energy + Delta-G solvation = -4010.290407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.03297 -41.10219 -40.17915 -36.57553 -36.02203 -35.75668 -34.45092 -33.27172 -33.14676 -31.37959 -29.57249 -28.15854 -27.68868 -26.13651 -25.36231 -24.97493 -23.32316 -22.64939 -21.30579 -20.27040 -18.94346 -18.61155 -18.27159 -17.77929 -17.45208 -16.98976 -16.76115 -16.52795 -16.47183 -16.06106 -15.71073 -15.59487 -15.28660 -15.12326 -14.74724 -14.62288 -14.47419 -14.11771 -13.82195 -13.39787 -13.32181 -13.17045 -13.02766 -12.92125 -12.80833 -12.55040 -12.52344 -12.42778 -12.29231 -12.11358 -11.98602 -11.94750 -11.83512 -11.16499 -10.93246 -10.73865 -10.49815 -10.14789 -10.06818 -9.98632 -8.71807 -7.89728 -5.36323 -0.15750 0.18088 1.44924 1.47399 1.57233 1.68109 2.17131 2.48300 2.76057 2.80486 3.11848 3.25171 3.40163 3.50934 3.55150 3.72532 3.93645 3.95941 4.03240 4.12149 4.14508 4.20391 4.42549 4.44722 4.46977 4.50062 4.59495 4.62496 4.66326 4.69311 4.72532 4.81674 4.98156 4.99819 5.05964 5.08795 5.13556 5.21812 5.36766 5.42399 5.48649 5.54215 5.61988 6.29426 6.34500 6.37817 6.59304 6.85097 7.06959 7.28218 7.76337 8.30322 9.16009 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023302 B = 0.002104 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.343745 B =13305.178556 C =13632.500008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 C 0.149 3.851 4 N -0.707 5.707 5 C 0.509 3.491 6 O -0.587 6.587 7 C -0.117 4.117 8 C -0.047 4.047 9 C 0.076 3.924 10 C 0.045 3.955 11 N -0.463 5.463 12 C 0.041 3.959 13 C 0.054 3.946 14 N -0.458 5.458 15 C 0.166 3.834 16 N -0.607 5.607 17 C -0.257 4.257 18 H 0.074 0.926 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.263 1.263 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.101 3.899 26 C 0.053 3.947 27 O -0.384 6.384 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.414 0.586 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.184 0.816 39 H 0.200 0.800 40 H 0.201 0.799 41 H 0.066 0.934 42 H -0.008 1.008 43 H 0.250 0.750 44 H 0.012 0.988 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 14.172 21.317 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.024 3.976 4 N -0.360 5.360 5 C 0.298 3.702 6 O -0.467 6.467 7 C -0.157 4.157 8 C -0.085 4.085 9 C -0.063 4.063 10 C -0.114 4.114 11 N -0.177 5.177 12 C -0.119 4.119 13 C -0.106 4.106 14 N -0.174 5.174 15 C 0.040 3.960 16 N -0.331 5.331 17 C -0.387 4.387 18 H 0.091 0.909 19 C -0.247 4.247 20 N -0.583 5.583 21 Si 0.794 3.206 22 H -0.187 1.187 23 H -0.217 1.217 24 H -0.223 1.223 25 C -0.024 4.024 26 C -0.024 4.024 27 O -0.303 6.303 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.252 0.748 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.201 0.799 39 H 0.217 0.783 40 H 0.218 0.782 41 H 0.085 0.915 42 H 0.010 0.990 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.954 14.687 20.733 26.097 hybrid contribution -0.383 -0.798 -1.352 1.616 sum -6.337 13.889 19.381 24.672 Atomic orbital electron populations 1.22108 0.93976 1.02794 1.02137 1.22179 0.94618 0.90639 0.87266 1.20996 0.98663 0.89440 0.88475 1.45841 1.53390 1.11845 1.24877 1.21234 0.79404 0.81513 0.88089 1.90696 1.40105 1.66930 1.49009 1.21493 1.03956 0.94953 0.95287 1.20172 1.01831 0.93192 0.93348 1.22244 0.90193 0.96576 0.97284 1.23915 1.02621 0.94287 0.90541 1.68499 1.17624 1.14222 1.17382 1.24339 0.88950 0.97344 1.01251 1.24353 1.03594 0.92905 0.89781 1.68262 1.15751 1.15014 1.18385 1.21080 0.95370 0.84375 0.95209 1.44276 1.68691 1.05550 1.14613 1.19536 1.21188 1.11871 0.86076 0.90850 1.25796 0.98869 1.00816 0.99195 1.70186 1.31149 1.38490 1.18426 0.85226 0.78829 0.77489 0.79028 1.18727 1.21713 1.22286 1.21823 0.97007 0.96377 0.87208 1.23102 0.99100 0.81807 0.98430 1.87820 1.73284 1.26399 1.42843 0.90279 0.92734 0.92068 0.92846 0.91180 0.74834 0.86860 0.87046 0.88572 0.90050 0.79881 0.78316 0.78217 0.91546 0.99007 0.94086 0.97029 0.91020 0.92109 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 7.92 71.98 0.57 -4.30 16 2 C 0.09 3.40 0.76 -10.70 -0.01 3.39 16 3 C 0.15 5.07 4.82 86.38 0.42 5.49 16 4 N -0.71 -18.47 5.15 -463.07 -2.39 -20.86 16 5 C 0.51 13.32 7.83 87.66 0.69 14.01 16 6 O -0.59 -20.35 15.98 -3.02 -0.05 -20.39 16 7 C -0.12 -2.03 5.57 29.85 0.17 -1.86 16 8 C -0.05 -0.82 4.92 29.85 0.15 -0.67 16 9 C 0.08 1.27 6.17 42.55 0.26 1.54 16 10 C 0.05 0.71 10.85 84.69 0.92 1.62 16 11 N -0.46 -7.60 10.50 -195.22 -2.05 -9.65 16 12 C 0.04 0.45 11.23 84.67 0.95 1.40 16 13 C 0.05 0.60 11.22 84.67 0.95 1.55 16 14 N -0.46 -7.67 10.06 -183.29 -1.84 -9.51 16 15 C 0.17 7.96 4.12 86.34 0.36 8.31 16 16 N -0.61 -29.59 2.57 -697.35 -1.79 -31.38 16 17 C -0.26 -13.64 9.65 84.03 0.81 -12.83 16 18 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 19 C -0.05 -2.82 4.95 84.86 0.42 -2.40 16 20 N -0.94 -55.14 11.14 21.65 0.24 -54.90 16 21 Si 0.97 44.09 29.59 68.60 2.03 46.12 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 25 C 0.10 4.02 6.73 86.36 0.58 4.60 16 26 C 0.05 1.64 6.60 72.08 0.48 2.12 16 27 O -0.38 -13.09 9.97 -148.98 -1.49 -14.58 16 28 H 0.08 1.94 6.87 -2.38 -0.02 1.92 16 29 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.06 2.13 6.12 -2.39 -0.01 2.11 16 31 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.41 8.76 7.20 -92.70 -0.67 8.09 16 34 H 0.11 1.77 7.97 -2.39 -0.02 1.75 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 1.60 7.84 -2.38 -0.02 1.58 16 37 H 0.08 1.66 8.10 -2.39 -0.02 1.64 16 38 H 0.18 2.09 7.95 -2.91 -0.02 2.06 16 39 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 41 H 0.07 3.57 6.14 -2.39 -0.01 3.55 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.25 14.32 8.31 -92.71 -0.77 13.54 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.07 2.65 7.96 -2.39 -0.02 2.64 16 46 H 0.06 1.78 6.25 -2.39 -0.01 1.76 16 47 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -73.41 381.32 0.68 -72.73 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.32 Total: 20.44 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 7.70 Total: 21.97 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -7.83 Total: -126.30 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -1.53 Total: -34.97 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -73.41 0.68 -72.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108325918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.863 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds